ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4b13 |
|---|---|
| Clone Library Name | barley_pub |
>DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like protein)| (Fer-1-like protein 1) Length = 2080 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Frame = -3 Query: 587 ASAFCKLTLGNNPARLTKIVSTGESPEWDEAFAWAFDSPP--KGQKLHISCKNNSKFGKK 414 + A+C R TK++ +P W+E F W P +G +LH+ K++ G+ Sbjct: 20 SDAYCSAVFAGVKKR-TKVIKNSVNPVWNEGFEWDLKGIPLDQGSELHVVVKDHETMGRN 78 Query: 413 SF-GKVTIQIDRVVMLGSVAGEYT--LLPESKSGPNRNLEIEFQWS 285 F G+ + + V+ S++ + LL K +L ++ ++ Sbjct: 79 RFLGEAKVPLREVLATPSLSASFNAPLLDTKKQPTGASLVLQVSYT 124
>FA62A_MOUSE (Q3U7R1) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1092 Score = 35.8 bits (81), Expect = 0.099 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Frame = -3 Query: 545 RLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLG 366 R +K + SP W+EAF + F P+ Q+L + K++S+ + G +T+ + R++ Sbjct: 502 RESKATYSTNSPVWEEAFRF-FLQDPRSQELDVQVKDDSR--ALTLGALTLPLARLL--- 555 Query: 365 SVAGEYTL---LPESKSGPNRNL 306 A E TL S SGPN L Sbjct: 556 -TASELTLDQWFQLSSSGPNSRL 577
>XTH9_ARATH (Q8LDW9) Xyloglucan endotransglucosylase/hydrolase protein 9| precursor (EC 2.4.1.207) (At-XTH9) (XTH-9) Length = 290 Score = 35.4 bits (80), Expect = 0.13 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 11/93 (11%) Frame = -3 Query: 533 IVSTGES---PEWDEAF--AWAFDS-PPKGQKLHISCKNNSKFGKKS-----FGKVTIQI 387 +VS GE+ ++DE + +WA D +G+ + N S G +S FGKV+IQI Sbjct: 17 VVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQI 76 Query: 386 DRVVMLGSVAGEYTLLPESKSGPNRNLEIEFQW 288 V G AG T S GPN N E +F++ Sbjct: 77 KLVE--GDSAGTVTAFYMSSDGPNHN-EFDFEF 106
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 34.7 bits (78), Expect = 0.22 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Frame = -3 Query: 539 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 360 T ++S E+P W + F ++H K++ G + G VTI ++++ + Sbjct: 215 TYVMSNSENPVWMQHFY--VPVAHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYSGAKI 272 Query: 359 AGEYTLLPES----KSGPNRNLEIEF 294 G Y +L + K G N +L I++ Sbjct: 273 EGTYPILTSNGKPCKPGANLSLSIQY 298
>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta| 2) (PLDdelta1) Length = 915 Score = 34.7 bits (78), Expect = 0.22 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Frame = -3 Query: 539 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 360 T ++S E+P W + F ++H K++ G + G VTI ++++ + Sbjct: 176 TYVISNSENPVWQQHFY--VPVAHHAAEVHFVVKDSDAVGSQLIGIVTIPVEQIYSGARI 233 Query: 359 AGEYTLLPES----KSGPNRNLEIEFQWSNK 279 G Y++ + K G +L I++ NK Sbjct: 234 EGTYSIRDSNGKPCKPGATLSLSIQYTSMNK 264
>KPCB_HUMAN (P05771) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)| (PKC-B) Length = 670 Score = 33.9 bits (76), Expect = 0.38 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%) Frame = -3 Query: 593 GNASAFCKLTLGNNPA----RLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------ 444 G + + KL L +P + TK + +PEW+E F + K ++L + Sbjct: 189 GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 248 Query: 443 CKNNSKFGKKSFGKVTIQIDRV----VMLGSVAGEYTLLPESKSGPNRNLEI 300 N G SFG +Q V +L GEY +P G N E+ Sbjct: 249 TSRNDFMGSLSFGISELQKASVDGWFKLLSQEEGEYFNVPVPPEGSEANEEL 300
>KPCB_RAT (P68403) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)| (PKC-B) Length = 670 Score = 33.1 bits (74), Expect = 0.64 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%) Frame = -3 Query: 593 GNASAFCKLTLGNNPA----RLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------ 444 G + + KL L +P + TK + +PEW+E F + K ++L + Sbjct: 189 GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 248 Query: 443 CKNNSKFGKKSFGKVTIQIDRV----VMLGSVAGEYTLLPESKSGPNRNLEI 300 N G SFG +Q V +L GEY +P G N E+ Sbjct: 249 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300
>KPCB_RABIT (P05772) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)| (PKC-B) Length = 670 Score = 33.1 bits (74), Expect = 0.64 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%) Frame = -3 Query: 593 GNASAFCKLTLGNNPA----RLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------ 444 G + + KL L +P + TK + +PEW+E F + K ++L + Sbjct: 189 GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 248 Query: 443 CKNNSKFGKKSFGKVTIQIDRV----VMLGSVAGEYTLLPESKSGPNRNLEI 300 N G SFG +Q V +L GEY +P G N E+ Sbjct: 249 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300
>KPCB_MOUSE (P68404) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)| (PKC-B) Length = 672 Score = 33.1 bits (74), Expect = 0.64 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%) Frame = -3 Query: 593 GNASAFCKLTLGNNPA----RLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------ 444 G + + KL L +P + TK + +PEW+E F + K ++L + Sbjct: 189 GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 248 Query: 443 CKNNSKFGKKSFGKVTIQIDRV----VMLGSVAGEYTLLPESKSGPNRNLEI 300 N G SFG +Q V +L GEY +P G N E+ Sbjct: 249 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300
>KPCB_BOVIN (P05126) Protein kinase C beta type (EC 2.7.11.13) (PKC-beta)| (PKC-B) Length = 672 Score = 33.1 bits (74), Expect = 0.64 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%) Frame = -3 Query: 593 GNASAFCKLTLGNNPA----RLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHIS------ 444 G + + KL L +P + TK + +PEW+E F + K ++L + Sbjct: 189 GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 248 Query: 443 CKNNSKFGKKSFGKVTIQIDRV----VMLGSVAGEYTLLPESKSGPNRNLEI 300 N G SFG +Q V +L GEY +P G N E+ Sbjct: 249 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEEL 300
>DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like protein)| (Fer-1-like protein 1) Length = 2083 Score = 33.1 bits (74), Expect = 0.64 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Frame = -3 Query: 539 TKIVSTGESPEWDEAFAWAFDSPPKGQ--KLHISCKNNSKFGKKSF-GKVTIQIDRVVML 369 TK++ +P W+E F W P Q +L + K++ G+ F G+ I + V+ Sbjct: 36 TKVIKNSVNPVWNEGFEWDLKGIPLDQSSELLVVVKDHETMGRNRFLGEAKIPLQEVLAT 95 Query: 368 GSVAGEYTL-LPESKSGP 318 S++ + L ++K P Sbjct: 96 PSLSASFNAPLLDAKQQP 113
>FA62A_PONPY (Q5RAG2) Protein FAM62A| Length = 1104 Score = 31.2 bits (69), Expect = 2.4 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = -3 Query: 539 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 360 +K V + P W+EAF + F P+ Q+L + K++S+ + G +T+ + R++ Sbjct: 514 SKAVYSTNCPVWEEAFRF-FLQDPQSQELDVQVKDDSR--ALTLGALTLPLARLL----T 566 Query: 359 AGEYTL---LPESKSGPNRNL 306 A E L S SGPN L Sbjct: 567 APELILDQWFQLSSSGPNSRL 587
>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing| protein) Length = 1104 Score = 31.2 bits (69), Expect = 2.4 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = -3 Query: 539 TKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFGKVTIQIDRVVMLGSV 360 +K V + P W+EAF + F P+ Q+L + K++S+ + G +T+ + R++ Sbjct: 514 SKAVYSTNCPVWEEAFRF-FLQDPQSQELDVQVKDDSR--ALTLGALTLPLARLL----T 566 Query: 359 AGEYTL---LPESKSGPNRNL 306 A E L S SGPN L Sbjct: 567 APELILDQWFQLSSSGPNSRL 587
>PP16A_CUCMA (Q9ZT47) 16 kDa phloem protein 1| Length = 149 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = -3 Query: 545 RLTKIV-STGESPEWDEAFAWAFDSPPKGQKLHISCK---NNSKFGKKSFGKVTIQIDRV 378 R++K+ + G +P WDE F + + P G HI K +++ G G V I + + Sbjct: 38 RMSKVAKNAGPNPLWDEKFKFLAEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVKNL 97 Query: 377 VMLGSVAGEYTLLP 336 + G G+ + P Sbjct: 98 LAEGVRKGKSEMPP 111
>CARP1_CANAL (P28872) Candidapepsin-1 precursor (EC 3.4.23.24) (Aspartate| protease 1) (ACP 1) (Secreted aspartic protease 1) Length = 391 Score = 29.6 bits (65), Expect = 7.1 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -3 Query: 569 LTLGNNPARLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKS 411 +T+G+N + IV TG S W + D P GQ CK + KS Sbjct: 68 ITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADF-CKGKGIYTPKS 119
>BLM_HUMAN (P54132) Bloom syndrome protein (EC 3.6.1.-) (RecQ protein-like 3)| (DNA helicase, RecQ-like type 2) Length = 1417 Score = 29.3 bits (64), Expect = 9.3 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -3 Query: 584 SAFCKLTLGNNPARLTKIVSTGESPEWDEA-FAWAFDSPPKGQKLHISCKNNSKFGKKSF 408 +A KL ++P L+ I + ++D + + +F +PP+ + +S SK GK++F Sbjct: 134 TALKKLEFSSSPDSLSTINDWDDMDDFDTSETSKSFVTPPQSHFVRVSTAQKSKKGKRNF 193 Query: 407 GKVTIQIDRVV 375 K + V Sbjct: 194 FKAQLYTTNTV 204
>YKH3_SCHPO (Q9UT00) Hypothetical protein PYUK71.03c in chromosome I| Length = 1225 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/66 (19%), Positives = 30/66 (45%) Frame = -3 Query: 584 SAFCKLTLGNNPARLTKIVSTGESPEWDEAFAWAFDSPPKGQKLHISCKNNSKFGKKSFG 405 +A+ KL + N T+ + +P W+E+F P+G+ + + ++ + FG Sbjct: 592 TAYAKLIINNKEVYTTRKIKKNNNPSWEESFGTLL---PEGKNATLGVQIFTEESEHPFG 648 Query: 404 KVTIQI 387 + + Sbjct: 649 TANVSL 654 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,689,820 Number of Sequences: 219361 Number of extensions: 1662737 Number of successful extensions: 3964 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3962 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
