ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4b09 |
|---|---|
| Clone Library Name | barley_pub |
>HGV2_HALRO (Q02508) Protein HGV2| Length = 510 Score = 33.1 bits (74), Expect = 0.66 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 17/159 (10%) Frame = -3 Query: 605 DNDQEGHM---PDYAVTLERYKSAGQNQVMPLPGDEDLGNSI-----VEAKSEHDEFAXX 450 D+DQE PD T ER K + + DED VE K E D+ Sbjct: 104 DSDQEQEQFEKPDLPET-EREKLREEVEAAMATEDEDTQEERGCPRRVEKKKEDDKPKES 162 Query: 449 XXXXXXXXXKYHDELKMEIEGTTFSNLSNKKADSAPDVADEDE---------TQAAVEQA 297 K +E + ++E +T ++ ++K+ P + E + + ++ Sbjct: 163 EKSAEKSDEKEKEEKQAKVESSTVKDVKDEKSSDKPVESSNTEEPGTSGTSASSSKENES 222 Query: 296 EKDADDIAKSVVSRKKRGLMEAMKISNDRKKSKVELLKQ 180 E+D DDI+ ++ + L + + +D+ K+ +++ Q Sbjct: 223 EEDPDDISNMQLAWEMLELAKVLYKKHDKSKTNKQMVAQ 261
>CBF5_SCHPO (O14007) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere-binding factor 5 homolog) Length = 474 Score = 31.2 bits (69), Expect = 2.5 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Frame = -3 Query: 356 ADSAPDV------ADEDETQAAVEQAEKDADDIAKSVVSRKKRGLMEAMKISNDRKKSK 198 A +AP V ++ + + +VE +EKD D+ AK R+K+ + K ++K+ K Sbjct: 409 APAAPTVEAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKK 467
>MSH6_HUMAN (P52701) DNA mismatch repair protein MSH6 (MutS-alpha 160 kDa| subunit) (G/T mismatch binding protein) (GTBP) (GTMBP) (p160) Length = 1360 Score = 30.4 bits (67), Expect = 4.2 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%) Frame = -3 Query: 506 DLGNSIVEAKSEHDEFAXXXXXXXXXXXKYHDELKMEIEGTTFSNLSNKK----ADSAPD 339 ++G + V KSE D +E++ + +G+ S+ KK +DS D Sbjct: 209 EVGTTYVTDKSEEDNEIES-----------EEEVQPKTQGSRRSSRQIKKRRVISDSESD 257 Query: 338 VADEDETQAAVEQAEKDADDIAKSVVSRKKRGLMEAMKISNDRKK 204 + D + E +D+I+ V + GL +K++ RK+ Sbjct: 258 IGGSDVEFKPDTKEEGSSDEISSGVGDSESEGLNSPVKVARKRKR 302
>IST1_YEAST (P53843) Increased sodium tolerance protein 1| Length = 298 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = -3 Query: 377 SNLSNKKADSAPDVADEDETQ--AAVEQAEKDADDIAKSVVSRKKR----GLMEAMKISN 216 SN+S+ +D + D+ D DE + A++ + D D + +K R + +KI Sbjct: 196 SNISSDFSDPSGDIEDNDEEKPILALDNDDNDNADAKHPITVKKPRQNSENIKNELKIPK 255 Query: 215 DRKKSKVE 192 D KK +E Sbjct: 256 DIKKEVIE 263
>PPCK_ERWCT (Q6CZP5) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 539 Score = 30.0 bits (66), Expect = 5.6 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = -3 Query: 344 PDVADEDETQAAVEQAEKDADDIAKSVVS 258 PD+ D +T A++EQ ++ ADD+A+ ++ Sbjct: 490 PDILDPRDTYASIEQWQEKADDLAQRFIT 518
>NODB_RHIME (P02963) Chitooligosaccharide deacetylase (EC 3.5.1.-) (Nodulation| protein B) Length = 217 Score = 29.6 bits (65), Expect = 7.2 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +3 Query: 93 ILQHSMRPPDEFGTSTTFSRSA--GLSRLLPLLEQLDFALLPI 215 +L H PPDE G T LSR++P L + FA+ P+ Sbjct: 171 VLLHDGCPPDESGALTGLRDQTLMALSRIVPALHERGFAIRPL 213
>MUC1_MOUSE (Q02496) Mucin-1 precursor (Polymorphic epithelial mucin) (PEMT)| (Episialin) Length = 630 Score = 29.6 bits (65), Expect = 7.2 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Frame = +3 Query: 105 SMRPPDEFGTSTTFSRSAGLSRLLPLLEQLDFALLPII---ANLHCFHKASLLPGNDRLG 275 S PD GTSTT + S + P+ + F+ + A + + +S+LP + LG Sbjct: 288 SATSPDHSGTSTTTNSSESVLATTPVYSSMPFSTTKVTSGSAIIPDHNGSSVLPTSSVLG 347 Query: 276 NVISILFSLFNSCLGLIFVSN 338 + S++++ S + VSN Sbjct: 348 SATSLVYN--TSAIATTPVSN 366
>CEBPZ_MOUSE (P53569) CCAAT/enhancer-binding protein zeta (CCAAT-box-binding| transcription factor) (CCAAT-binding factor) (CBF) Length = 1052 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = -3 Query: 413 DELKMEIEGTTFSNLSNKKADSAPDVADEDETQAAVEQAEKDAD--DIAKSVVSRKKR 246 ++ +++ +G TF ++S+ +++ AP+ AD + + K D D A S +KK+ Sbjct: 908 EDFEIDEDGGTFMDVSDDESEDAPEFADANPKANTKKSKRKSEDDFDFAGSFQGQKKK 965
>O52K1_HUMAN (Q8NGK4) Olfactory receptor 52K1| Length = 314 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +3 Query: 180 LLEQLDFALLPIIANLHCFHKA--SLLPGNDRLGNVISILFSLFNSCLGLIFV 332 LL + + P+IA+ +C H A L G+ N+ I ++F L L+FV Sbjct: 164 LLRRFHYCRGPVIAHCYCEHMAVVRLACGDTSFNNIYGIAVAMFIVVLDLLFV 216
>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting| protein) Length = 778 Score = 29.3 bits (64), Expect = 9.5 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +3 Query: 105 SMRPPDEFGTSTTFSRSAGLSRLLPLLEQLDFALLPIIANLHCFHKASL 251 S+RPP + AGLS L P L L + +HCFH+A L Sbjct: 691 SLRPP---------AGQAGLSNLAPRTLALRERLKSCLTAIHCFHEARL 730
>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 948 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = -3 Query: 413 DELKMEIEGTTFSNLSNKKADSAPDVADEDETQAAVEQAEKDADDIAK---SVVSRKKRG 243 D L++ +E + NKK D+A+E TQA KD D+ + +V+ +K Sbjct: 497 DALRLRLEEK--ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIEN 554 Query: 242 LMEAMKISNDRKKSKVELLK 183 L E ++ + S E +K Sbjct: 555 LQEQLRDKEKQMSSLKERVK 574
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = -3 Query: 353 DSAPDVADEDETQAAVEQAEKDADDIAKSVVSRKKRGLMEAMKISNDRKKSKVE 192 D D DED+ E+ E++ + + ++ RKK M K + + KK KVE Sbjct: 248 DDDEDDEDEDDDDEDEEEEEEEEEPVKEAPGKRKKE--MAKQKAAPEAKKQKVE 299
>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)| Length = 1186 Score = 29.3 bits (64), Expect = 9.5 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Frame = -3 Query: 389 GTTFSNLSNKKADSAPDVADEDETQAAVEQAEKDADDIAKSVVSRKKRGLMEAMK---IS 219 GT S++SNKK S+ AD+D+ +AA +++ + + +S G + K S Sbjct: 268 GTRDSSISNKKKASSTIYADKDQIRAANDRSSSKQLKQSSAQISSGPEGTSVSSKDRQYS 327 Query: 218 NDRK 207 ND++ Sbjct: 328 NDKR 331
>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)| Length = 1116 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = -3 Query: 413 DELKMEIEGTTFSNLSNKKADSAPDVADEDETQAAVEQAEKDADDIAK---SVVSRKKRG 243 D L++ +E + NKK D+A+E TQA KD D+ + +V+ +K Sbjct: 525 DALRLRLEEK--ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIEN 582 Query: 242 LMEAMKISNDRKKSKVELLK 183 L E ++ + S E +K Sbjct: 583 LQEQLRDKEKQMSSLKERVK 602
>GRC3_KLULA (Q6CQ06) Protein GRC3| Length = 631 Score = 29.3 bits (64), Expect = 9.5 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -3 Query: 419 YHDELKMEIEGTTFSNLSNKKADSAPDV 336 YHD++K+ ++GT ++ +ADS PDV Sbjct: 497 YHDDIKLSLDGTV---VALHRADSTPDV 521
>MIA40_CANGA (Q6FW26) Intermembrane space import and assembly protein 40,| mitochondrial precursor (Mitochondrial import inner membrane translocase TIM40) Length = 404 Score = 29.3 bits (64), Expect = 9.5 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 12/96 (12%) Frame = -3 Query: 512 DEDLGNSIVEAKSEHDEFAXXXXX----------XXXXXXKYHDELKMEIEGTTFSNLSN 363 DE + EAK HDEFA DE E G + S S+ Sbjct: 128 DESASSGDSEAKKAHDEFADQNEASEKESAPMGESADADQTAKDETVAEKTGNSKSE-SS 186 Query: 362 KKADSAPDV--ADEDETQAAVEQAEKDADDIAKSVV 261 + S D+ +D +ET V +A+K+ I+ + V Sbjct: 187 ESDQSEQDILSSDLEETMETVSEADKELHQISDNTV 222
>ZFY1_XENLA (Q01611) Zinc finger Y-chromosomal protein 1 (ZFY-1)| Length = 794 Score = 29.3 bits (64), Expect = 9.5 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Frame = -3 Query: 518 PGDEDLGNS--IVEAKSEHDEFAXXXXXXXXXXXKYHDELKMEIEGTTFSNLSNKKADSA 345 PG+EDLG + IVE++SE+D H+ ++ E + +++ + D Sbjct: 252 PGEEDLGGTVDIVESESENDH--------GDGFLDSHNGGRLPREKMVYMTVNDSQNDDD 303 Query: 344 PDVAD-EDETQAAVEQAEKDA 285 DVA+ DE V E+DA Sbjct: 304 LDVAEIADEVYMEVIVGEEDA 324
>YJHF_ECOLI (P39357) Hypothetical permease yjhF| Length = 449 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 12/76 (15%) Frame = +3 Query: 129 GTSTTFSRSA----GLSRLLPLLEQLDFALLPIIANLHC--------FHKASLLPGNDRL 272 G + FS S G+S L +L + A++ II H F+ L GN + Sbjct: 215 GATRRFSESEMPGFGISFLTAMLPVILMAVVTIIQMTHAKSAADSGLFYNVILFLGNSTI 274 Query: 273 GNVISILFSLFNSCLG 320 +IS+LF+++ LG Sbjct: 275 AMLISLLFAIYTMGLG 290
>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 1120 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = -3 Query: 413 DELKMEIEGTTFSNLSNKKADSAPDVADEDETQAAVEQAEKDADDIAK---SVVSRKKRG 243 D L++ +E + NKK D+A+E TQA KD D+ + +V+ +K Sbjct: 525 DALRLRLEEK--ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIEN 582 Query: 242 LMEAMKISNDRKKSKVELLK 183 L E ++ + S E +K Sbjct: 583 LQEQLRDKEKQMSSLKERVK 602 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,908,472 Number of Sequences: 219361 Number of extensions: 1268132 Number of successful extensions: 4208 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4036 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4201 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
