ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4b01 |
|---|---|
| Clone Library Name | barley_pub |
>THOC3_MOUSE (Q8VE80) THO complex subunit 3 (Tho3)| Length = 351 Score = 76.6 bits (187), Expect = 5e-14 Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Frame = -2 Query: 630 WPVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAG 451 WPVRT+SF+H + +A ASED FIDIA ++TG + ++ C++ +V W+PK LLA+A Sbjct: 267 WPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFAC 326 Query: 450 DDKN-KYQT--DDGVFRIFG 400 DDK+ KY + + G ++FG Sbjct: 327 DDKDGKYDSSREAGTVKLFG 346
>THOC3_HUMAN (Q96J01) THO complex subunit 3 (Tho3) (TEX1 homolog)| Length = 351 Score = 76.6 bits (187), Expect = 5e-14 Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 3/80 (3%) Frame = -2 Query: 630 WPVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAG 451 WPVRT+SF+H + +A ASED FIDIA ++TG + ++ C++ +V W+PK LLA+A Sbjct: 267 WPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFAC 326 Query: 450 DDKN-KYQT--DDGVFRIFG 400 DDK+ KY + + G ++FG Sbjct: 327 DDKDGKYDSSREAGTVKLFG 346
>AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)| Length = 437 Score = 52.8 bits (125), Expect = 8e-07 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%) Frame = -2 Query: 630 WPVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAG 451 +P R+VSF+ +FIA +S + I+I +I++ + IH I C + ++S+ W+P LLAYA Sbjct: 361 FPCRSVSFSFDGQFIAASSFESTIEIFHIESSQPIHTIEC-SGVSSLMWHPTLPLLAYAP 419 Query: 450 D--DKNKYQTDDGVFRIFGFES 391 + + NK D R+FG+ S Sbjct: 420 EINENNK----DPSIRVFGYHS 437
>TBL1Y_HUMAN (Q9BQ87) F-box-like/WD-repeat protein TBL1Y (Transducin beta-like| 1Y protein) (Transducin-beta-like 1, Y-linked) Length = 522 Score = 33.5 bits (75), Expect = 0.53 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGD 448 PV +V+F+ +++A S D ++ I N Q+G +H + V WN + + + + Sbjct: 454 PVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGGIFEVCWNARGDKVGASAS 513 Query: 447 D 445 D Sbjct: 514 D 514
>PRP19_CAEEL (Q10051) PRP19/PSO4 homolog| Length = 492 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIP----CKAAMNSVEWNP 478 PV +S N + ++I AS+D + ++I++G+S+ ++ + A++S+E++P Sbjct: 295 PVTDISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSIEFHP 348
>EBI_DROME (Q95RJ9) F-box-like/WD repeat protein ebi| Length = 700 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGD 448 PV +V+F+ + +A S D + I + QTG+ +H + V WN K + + Sbjct: 629 PVYSVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSYKGTGGIFEVCWNSKGTKVGASAS 688 Query: 447 DKNKYQTD 424 D + + D Sbjct: 689 DGSVFVLD 696
>YA98_SCHPO (Q09786) Hypothetical WD-repeat protein C13G6.08 in chromosome I| Length = 535 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 576 SEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKY 472 S D I N G+ I ++ C A + S+ W+PKY Sbjct: 386 SHDKHIRFYNCFNGKKIDELYCGAQITSIHWSPKY 420
>WDR5_MOUSE (P61965) WD-repeat protein 5 (BMP2-induced 3-kb gene protein)| (WD-repeat protein BIG-3) Length = 334 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -2 Query: 624 VRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPC-KAAMNSVEWNPKYNLLAYAGD 448 V +V F+ E++A +S D I I G+ I K ++ V W+ NLL A D Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107 Query: 447 DK 442 DK Sbjct: 108 DK 109
>WDR5_HUMAN (P61964) WD-repeat protein 5 (BMP2-induced 3-kb gene protein)| Length = 334 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -2 Query: 624 VRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPC-KAAMNSVEWNPKYNLLAYAGD 448 V +V F+ E++A +S D I I G+ I K ++ V W+ NLL A D Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107 Query: 447 DK 442 DK Sbjct: 108 DK 109
>TBL1X_HUMAN (O60907) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) (Transducin-beta-like 1, X-linked) (SMAP55) Length = 526 Score = 31.6 bits (70), Expect = 2.0 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGD 448 PV +V+F+ +++A S D + I N Q+G +H + V WN + + + + Sbjct: 456 PVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEVCWNARGDKVGASAS 515 Query: 447 D 445 D Sbjct: 516 D 516
>BOP1_HUMAN (Q14137) Ribosome biogenesis protein BOP1 (Block of proliferation 1| protein) Length = 746 Score = 31.6 bits (70), Expect = 2.0 Identities = 13/49 (26%), Positives = 25/49 (51%) Frame = -2 Query: 624 VRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNP 478 VR +S + +++ S+D + + + T R + +P + SV WNP Sbjct: 416 VRCLSVSPGGQWLVSGSDDGSLRLWEVATARCVRTVPVGGVVKSVAWNP 464
>TBLX_MOUSE (Q9QXE7) F-box-like/WD-repeat protein TBL1X (Transducin beta-like| 1X protein) Length = 527 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGD 448 PV +V+F+ +++A S D + I N Q+G +H + V WN + + + + Sbjct: 457 PVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASAS 516 Query: 447 D 445 D Sbjct: 517 D 517
>TBL1R_MOUSE (Q8BHJ5) F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like| 1X-related protein 1) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1) (TBL1-related protein 1) Length = 514 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWN 481 PV +V+F+ ++A S D + I N QTG +H + V WN Sbjct: 444 PVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 492
>TBL1R_HUMAN (Q9BZK7) F-box-like/WD-repeat protein TBL1XR1 (Transducin beta-like| 1X-related protein 1) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1) (TBL1-related protein 1) Length = 514 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWN 481 PV +V+F+ ++A S D + I N QTG +H + V WN Sbjct: 444 PVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 492
>TB1RB_XENLA (Q6GPC6) F-box-like/WD-repeat-containing protein TBL1XR1-B| (Transducin beta-like 1X-related homolog 1-B) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1-B) (TBL1-related protein 1-B) Length = 522 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWN 481 PV +V+F+ ++A S D + I N QTG +H + V WN Sbjct: 452 PVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 500
>TB1RA_XENLA (Q7SZM9) F-box-like/WD-repeat-containing protein TBL1XR1-A| (Transducin beta-like 1X-related protein 1-A) (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1-A) (TBL1-related protein 1-A) (xTBLR1) Length = 519 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = -2 Query: 627 PVRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWN 481 PV +V+F+ ++A S D + I N QTG +H + V WN Sbjct: 449 PVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWN 497
>HAT2_KLULA (Q6CSI1) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 408 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -2 Query: 576 SEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKY-NLLAYAGDDKNKYQTD 424 SED + I + + R+I ++ +A N++ ++ + NLLA AG D N Y D Sbjct: 235 SEDNTLIIHDTNSDRAIQKLSVSSAFNTLAFSKRSENLLAAAGTDSNVYLYD 286
>BOP1_MOUSE (P97452) Ribosome biogenesis protein BOP1 (Block of proliferation 1| protein) Length = 732 Score = 30.0 bits (66), Expect = 5.9 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -2 Query: 624 VRTVSFNHTXEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKYN--LLAYAG 451 VR +S + +++A S+D + + + T R + + + S+ WNP L+A A Sbjct: 402 VRCLSVSPGGQWLASGSDDGTLKLWEVATARCMKTVHVGGVVRSIAWNPNPTICLVAAAM 461 Query: 450 DD 445 DD Sbjct: 462 DD 463
>UB2J1_MOUSE (Q9JJZ4) Ubiquitin-conjugating enzyme E2 J1 (EC 6.3.2.19)| (Non-canonical ubiquitin-conjugating enzyme 1) (NCUBE1) Length = 318 Score = 29.6 bits (65), Expect = 7.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 197 PNPSFRTSLVHILHLKPNKGAFTIQSLNQTPHSSR 301 P+ S RT+L+ I+ P KG I SL+ TP R Sbjct: 104 PSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERR 138
>UB2J1_HUMAN (Q9Y385) Ubiquitin-conjugating enzyme E2 J1 (EC 6.3.2.19)| (Non-canonical ubiquitin-conjugating enzyme 1) (NCUBE1) (Yeast ubiquitin-conjugating enzyme UBC6 homolog E) (HSUBC6e) Length = 318 Score = 29.6 bits (65), Expect = 7.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 197 PNPSFRTSLVHILHLKPNKGAFTIQSLNQTPHSSR 301 P+ S RT+L+ I+ P KG I SL+ TP R Sbjct: 104 PSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERR 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,127,756 Number of Sequences: 219361 Number of extensions: 1862644 Number of successful extensions: 4379 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4245 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4378 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
