ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111666.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 2e-83
2gb|AY108348.1| Zea mays PCO114428 mRNA sequence 295 9e-77
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
4dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
5ref|NM_124995.2| Arabidopsis thaliana nucleotide binding AT5G561... 96 2e-16
6gb|BT000174.1| Arabidopsis thaliana unknown protein (At5g56130) ... 96 2e-16
7gb|AY093120.1| Arabidopsis thaliana unknown protein (At5g56130) ... 96 2e-16
8dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 70 1e-08
9emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chro... 46 0.14
10emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chr... 42 2.2
11gb|AC157798.5| Mus musculus chromosome 1, clone RP24-153N24, com... 42 2.2
12gb|AC113015.12| Mus musculus chromosome 1, clone RP23-180E19, co... 42 2.2
13gb|AF418272.1|AF418272 Homo sapiens coagulation factor XIII, A1 ... 42 2.2
14ref|XM_630472.1| Dictyostelium discoideum hypothetical protein (... 40 8.6
15gb|AC147978.3| Pan troglodytes BAC clone CH251-94E4 from 7, comp... 40 8.6
16gb|AC145999.3| Pan troglodytes BAC clone RP43-138L12 from 7, com... 40 8.6
17gb|AC121570.4| Mus musculus BAC clone RP23-228G6 from 16, comple... 40 8.6
18gb|AC146227.2| Pan troglodytes BAC clone RP43-32J19 from 7, comp... 40 8.6
19emb|CR709879.2|CNS0GAOZ Tetraodon nigroviridis full-length cDNA 40 8.6
20gb|AC015968.4| Homo sapiens BAC clone RP11-133L20 from 7, comple... 40 8.6
21emb|AL445212.9| Human DNA sequence from clone RP11-37E23 on chro... 40 8.6
22emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060... 40 8.6
23emb|AL669903.16| Mouse DNA sequence from clone RP23-72A14 on chr... 40 8.6
24gb|AC138449.10| Medicago truncatula clone mth2-14o23, complete s... 40 8.6
25gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, comp... 40 8.6
26gb|AC003063.7| Mus musculus Chromosome 16 BAC Clone b40-o20 Synt... 40 8.6
27gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-4... 40 8.6
28gb|AC145937.2| Pan troglodytes BAC clone RP43-10P16 from chromos... 40 8.6
29gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, co... 40 8.6
30gb|BC072651.1| Mus musculus HEG homolog 1 (zebrafish), mRNA (cDN... 40 8.6
31emb|BX294656.8| Zebrafish DNA sequence from clone CH211-238M13, ... 40 8.6
32gb|AC000096.17| Mus musculus Chromosome 16 BAC Clone bd3-6 Synte... 40 8.6
33gb|AC004857.1|AC004857 Homo sapiens PAC clone RP4-685A2 from 7p2... 40 8.6
34gb|AC154552.2| Mus musculus BAC clone RP23-414P13 from 13, compl... 40 8.6
35emb|Z74739.1|HS214K23 Human DNA sequence from clone RP1-214K23 o... 40 8.6
36gb|AC155268.1| Mus musculus BAC clone RP23-204K22 from 16, compl... 40 8.6
37emb|AL121654.1|CNS01DS4 BAC sequence from the SPG4 candidate reg... 40 8.6
38gb|AC124490.4| Mus musculus BAC clone RP23-453I1 from 16, comple... 40 8.6
39gb|AC078895.34| Mus musculus strain C57BL/6J chromosome 16 clone... 40 8.6 
>dbj|AK111666.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154E12, full
            insert sequence
          Length = 1414

 Score =  317 bits (160), Expect = 2e-83
 Identities = 225/247 (91%)
 Strand = Plus / Minus

                                                                        
Query: 385  ttatgtgctttcaaaaccaaatattcggaaaacaccgtcatcagtctggtacttattctt 444
            ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct: 1222 ttatgtgctttcaaagccaaatattcggaaaacaccttcatcagcctggtacttgttctt 1163

                                                                        
Query: 445  gtcatctcctgcataagccaggaggttgtatttagggttccactcaacactattcatagc 504
            ||| |||||||| ||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 1162 gtcgtctcctgcgtaagccaggaggttgtacttggggttccattcaacactattcatagc 1103

                                                                        
Query: 505  tgctttacatggaatctgatgaattgatcgtccagtctgaatattggcaatgtcaatgaa 564
            ||| || ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct: 1102 tgccttgcatggaatctgatgaatcgatcgtccagtttgaacattggcaatgtcaatgaa 1043

                                                                        
Query: 565  aggatcttcactggcatatgcaataaattctncagtgtgattgaagctaactgttctgac 624
             |||||||| || |||||||||| ||| ||| |||| |||||||||||||||||||| ||
Sbjct: 1042 gggatcttcgctagcatatgcaagaaactctccagtatgattgaagctaactgttcttac 983

                   
Query: 625  aggccac 631
            |||||||
Sbjct: 982  aggccac 976
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>gb|AY108348.1| Zea mays PCO114428 mRNA sequence
          Length = 1036

 Score =  295 bits (149), Expect = 9e-77
 Identities = 217/240 (90%)
 Strand = Plus / Minus

                                                                        
Query: 392  ctttcaaaaccaaatattcggaaaacaccgtcatcagtctggtacttattcttgtcatct 451
            ||||| || |||||||  ||||||||||| |||||||||   ||||| |||||||| |||
Sbjct: 1004 ctttcgaagccaaatacccggaaaacaccttcatcagtcatatacttgttcttgtcgtct 945

                                                                        
Query: 452  cctgcataagccaggaggttgtatttagggttccactcaacactattcatagctgcttta 511
            || ||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 944  cccgcataggccaggaggttgtacttaggattccattcaacgctattcatagctgcttta 885

                                                                        
Query: 512  catggaatctgatgaattgatcgtccagtctgaatattggcaatgtcaatgaaaggatct 571
            ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 884  catggaatctgatgaattgatcgtccagtctcaacattggcaatgtcaatgaaaggatct 825

                                                                        
Query: 572  tcactggcatatgcaataaattctncagtgtgattgaagctaactgttctgacaggccac 631
            ||||||||||||||||| |||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 824  tcactggcatatgcaatgaattctccagtatgactgaagctaactgttcttacaggccac 765
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  165 bits (83), Expect = 2e-37
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                           
Query: 422     tcatcagtctggtacttattcttgtcatctcctgcataagccaggaggttgtatttaggg 481
               ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| || |||
Sbjct: 7222098 tcatcagcctggtacttgttcttgtcgtctcctgcgtaagccaggaggttgtacttgggg 7222039

                                                                           
Query: 482     ttccactcaacactattcatagctgctttacatggaatctgatgaattgatcgtccagtc 541
               ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 7222038 ttccattcaacactattcatagctgccttgcatggaatctgatgaatcgatcgtccagtt 7221979

                          
Query: 542     tgaatattggc 552
               |||| ||||||
Sbjct: 7221978 tgaacattggc 7221968



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                           
Query: 552     caatgtcaatgaaaggatcttcactggcatatgcaataaattctncagtgtgattgaagc 611
               ||||||||||||| |||||||| || |||||||||| ||| ||| |||| ||||||||||
Sbjct: 7221876 caatgtcaatgaagggatcttcgctagcatatgcaagaaactctccagtatgattgaagc 7221817

                                   
Query: 612     taactgttctgacaggccac 631
               |||||||||| |||||||||
Sbjct: 7221816 taactgttcttacaggccac 7221797



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                   
Query: 385     ttatgtgctttcaaaaccaaatattcggaaaacacc 420
               ||||||||||||||| ||||||||||||||||||||
Sbjct: 7222388 ttatgtgctttcaaagccaaatattcggaaaacacc 7222353
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>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1381_H04
          Length = 130961

 Score =  165 bits (83), Expect = 2e-37
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                         
Query: 422   tcatcagtctggtacttattcttgtcatctcctgcataagccaggaggttgtatttaggg 481
             ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| || |||
Sbjct: 74203 tcatcagcctggtacttgttcttgtcgtctcctgcgtaagccaggaggttgtacttgggg 74144

                                                                         
Query: 482   ttccactcaacactattcatagctgctttacatggaatctgatgaattgatcgtccagtc 541
             ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 74143 ttccattcaacactattcatagctgccttgcatggaatctgatgaatcgatcgtccagtt 74084

                        
Query: 542   tgaatattggc 552
             |||| ||||||
Sbjct: 74083 tgaacattggc 74073



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                         
Query: 552   caatgtcaatgaaaggatcttcactggcatatgcaataaattctncagtgtgattgaagc 611
             ||||||||||||| |||||||| || |||||||||| ||| ||| |||| ||||||||||
Sbjct: 73981 caatgtcaatgaagggatcttcgctagcatatgcaagaaactctccagtatgattgaagc 73922

                                 
Query: 612   taactgttctgacaggccac 631
             |||||||||| |||||||||
Sbjct: 73921 taactgttcttacaggccac 73902



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                 
Query: 385   ttatgtgctttcaaaaccaaatattcggaaaacacc 420
             ||||||||||||||| ||||||||||||||||||||
Sbjct: 74493 ttatgtgctttcaaagccaaatattcggaaaacacc 74458
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>ref|NM_124995.2| Arabidopsis thaliana nucleotide binding AT5G56130 mRNA, complete
           cds
          Length = 1171

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 113/134 (84%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                       
Query: 395 tcaaaaccaaatattcggaaaacaccgtcatcagtctggtactt---attcttgtcatct 451
           |||||||||||||| ||||||||||| |||||||| |  |||||   |||||||||||| 
Sbjct: 958 tcaaaaccaaatatccggaaaacaccttcatcagtattatacttgggattcttgtcatca 899

                                                                       
Query: 452 cctgcataagccaggaggttgtatttagggttccactcaacactattcatagctgcttta 511
           |||||||| || || |  |||||||| || |||||||||||||| ||||| |||||   |
Sbjct: 898 cctgcatatgcaagtaaattgtatttgggattccactcaacactgttcatggctgcccga 839

                         
Query: 512 catggaatctgatg 525
           ||||||||||||||
Sbjct: 838 catggaatctgatg 825
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>gb|BT000174.1| Arabidopsis thaliana unknown protein (At5g56130) mRNA, complete cds
          Length = 983

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 113/134 (84%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                       
Query: 395 tcaaaaccaaatattcggaaaacaccgtcatcagtctggtactt---attcttgtcatct 451
           |||||||||||||| ||||||||||| |||||||| |  |||||   |||||||||||| 
Sbjct: 938 tcaaaaccaaatatccggaaaacaccttcatcagtattatacttgggattcttgtcatca 879

                                                                       
Query: 452 cctgcataagccaggaggttgtatttagggttccactcaacactattcatagctgcttta 511
           |||||||| || || |  |||||||| || |||||||||||||| ||||| |||||   |
Sbjct: 878 cctgcatatgcaagtaaattgtatttgggattccactcaacactgttcatggctgcccga 819

                         
Query: 512 catggaatctgatg 525
           ||||||||||||||
Sbjct: 818 catggaatctgatg 805
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>gb|AY093120.1| Arabidopsis thaliana unknown protein (At5g56130) mRNA, complete cds
          Length = 1171

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 113/134 (84%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                       
Query: 395 tcaaaaccaaatattcggaaaacaccgtcatcagtctggtactt---attcttgtcatct 451
           |||||||||||||| ||||||||||| |||||||| |  |||||   |||||||||||| 
Sbjct: 958 tcaaaaccaaatatccggaaaacaccttcatcagtattatacttgggattcttgtcatca 899

                                                                       
Query: 452 cctgcataagccaggaggttgtatttagggttccactcaacactattcatagctgcttta 511
           |||||||| || || |  |||||||| || |||||||||||||| ||||| |||||   |
Sbjct: 898 cctgcatatgcaagtaaattgtatttgggattccactcaacactgttcatggctgcccga 839

                         
Query: 512 catggaatctgatg 525
           ||||||||||||||
Sbjct: 838 catggaatctgatg 825
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>dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7
          Length = 82033

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                         
Query: 439   attcttgtcatctcctgcataagccaggaggttgtatttagggttccactcaacactatt 498
             |||||||||||| |||||||| || || |  |||||||| || |||||||||||||| ||
Sbjct: 57231 attcttgtcatcacctgcatatgcaagtaaattgtatttgggattccactcaacactgtt 57290

                                        
Query: 499   catagctgctttacatggaatctgatg 525
             ||| |||||   |||||||||||||||
Sbjct: 57291 catggctgcccgacatggaatctgatg 57317



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 395   tcaaaaccaaatattcggaaaacacc 420
             |||||||||||||| |||||||||||
Sbjct: 57085 tcaaaaccaaatatccggaaaacacc 57110
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>emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chromosome 2, complete
             sequence
          Length = 145382

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 11    tattttactttaatatgtttagt 33
             |||||||||||||||||||||||
Sbjct: 59900 tattttactttaatatgtttagt 59922
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>emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chromosome 6p24.3-25.3
             Contains the 5' end of the F13A1 gene for coagulation
             factor XIII A chain precursor, a SNAP19 (sRNA activating
             protein complex 19kDa subunit) pseudogene and two putative
             novel gene, complete sequence
          Length = 147038

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 422   tcatcagtctggtacttattc 442
             |||||||||||||||||||||
Sbjct: 27422 tcatcagtctggtacttattc 27442
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>gb|AC157798.5| Mus musculus chromosome 1, clone RP24-153N24, complete sequence
          Length = 163087

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 18     ctttaatatgtttagtaatgttctg 42
              |||||| ||||||||||||||||||
Sbjct: 148144 ctttaaaatgtttagtaatgttctg 148120
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>gb|AC113015.12| Mus musculus chromosome 1, clone RP23-180E19, complete sequence
          Length = 188389

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 18     ctttaatatgtttagtaatgttctg 42
              |||||| ||||||||||||||||||
Sbjct: 149874 ctttaaaatgtttagtaatgttctg 149898
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>gb|AF418272.1|AF418272 Homo sapiens coagulation factor XIII, A1 polypeptide (F13A1) gene,
             complete cds
          Length = 178952

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 422   tcatcagtctggtacttattc 442
             |||||||||||||||||||||
Sbjct: 71377 tcatcagtctggtacttattc 71357
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>ref|XM_630472.1| Dictyostelium discoideum hypothetical protein (DDB0219601), partial
            mRNA
          Length = 2667

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 173  aatctcttaaatttggtcaaatta 196
            ||||||||||| ||||||||||||
Sbjct: 2534 aatctcttaaacttggtcaaatta 2557
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>gb|AC147978.3| Pan troglodytes BAC clone CH251-94E4 from 7, complete sequence
          Length = 206433

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 576   tggcatatgcaataaattct 595
             ||||||||||||||||||||
Sbjct: 60749 tggcatatgcaataaattct 60730
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>gb|AC145999.3| Pan troglodytes BAC clone RP43-138L12 from 7, complete sequence
          Length = 182926

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 576    tggcatatgcaataaattct 595
              ||||||||||||||||||||
Sbjct: 155407 tggcatatgcaataaattct 155388
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>gb|AC121570.4| Mus musculus BAC clone RP23-228G6 from 16, complete sequence
          Length = 184174

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ccaaacaagggtgcattcac 264
             ||||||||||||||||||||
Sbjct: 47685 ccaaacaagggtgcattcac 47666
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>gb|AC146227.2| Pan troglodytes BAC clone RP43-32J19 from 7, complete sequence
          Length = 181835

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 90   caatacaacaacactgtttggttt 113
            ||||||| ||||||||||||||||
Sbjct: 5579 caatacagcaacactgtttggttt 5556
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>emb|CR709879.2|CNS0GAOZ Tetraodon nigroviridis full-length cDNA
          Length = 814

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 gaatctacatagacaacttg 358
           ||||||||||||||||||||
Sbjct: 772 gaatctacatagacaacttg 791
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>gb|AC015968.4| Homo sapiens BAC clone RP11-133L20 from 7, complete sequence
          Length = 128638

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    caatacaacaacactgtttggttt 113
             ||||||| ||||||||||||||||
Sbjct: 51718 caatacagcaacactgtttggttt 51695
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>emb|AL445212.9| Human DNA sequence from clone RP11-37E23 on chromosome 13 Contains the
             3' end of a novel gene (CG003, 13CDNA73), 2 novel genes,
             the 5' end of the  BRCA2 gene for breast cancer 2, early
             onset and a interferon-induced protein with
             tetratricopeptide repeats 1 (IFIT1) pseudogene, complete
             sequence
          Length = 166657

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aattacctaatccatcattt 211
             ||||||||||||||||||||
Sbjct: 73898 aattacctaatccatcattt 73879
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>emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060K6 on chromosome 20p12.1-13
             Contains the RPS11P1 gene for ribosomal protein S11
             pseudogene 1, complete sequence
          Length = 117349

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   aaaaagtggaattacatttg 323
             ||||||||||||||||||||
Sbjct: 73524 aaaaagtggaattacatttg 73543
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>emb|AL669903.16| Mouse DNA sequence from clone RP23-72A14 on chromosome 11 Contains a
            CpG island, complete sequence
          Length = 208028

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 541  ctgaatattggcaatgtcaa 560
            ||||||||||||||||||||
Sbjct: 5563 ctgaatattggcaatgtcaa 5544
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>gb|AC138449.10| Medicago truncatula clone mth2-14o23, complete sequence
          Length = 30085

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 558   caatgaaaggatcttcactggcat 581
             |||||||||||||||| |||||||
Sbjct: 11695 caatgaaaggatcttctctggcat 11718
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>gb|AC016266.14| Homo sapiens chromosome 15, clone RP11-2C7, complete sequence
          Length = 149387

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    atgtgctttcaaaaccaaat 406
              ||||||||||||||||||||
Sbjct: 125453 atgtgctttcaaaaccaaat 125472
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>gb|AC003063.7| Mus musculus Chromosome 16 BAC Clone b40-o20 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 128143

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    actttaatatgtttagtaat 36
             ||||||||||||||||||||
Sbjct: 23214 actttaatatgtttagtaat 23233
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>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete
            sequence
          Length = 113539

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 558  caatgaaaggatcttcactggcat 581
            |||||||||||||||| |||||||
Sbjct: 1942 caatgaaaggatcttctctggcat 1919
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>gb|AC145937.2| Pan troglodytes BAC clone RP43-10P16 from chromosome 7, complete
             sequence
          Length = 182785

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    caatacaacaacactgtttggttt 113
             ||||||| ||||||||||||||||
Sbjct: 96928 caatacagcaacactgtttggttt 96951
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>gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, complete sequence
          Length = 189975

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   atgtgctttcaaaaccaaat 406
             ||||||||||||||||||||
Sbjct: 15357 atgtgctttcaaaaccaaat 15376
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>gb|BC072651.1| Mus musculus HEG homolog 1 (zebrafish), mRNA (cDNA clone
            IMAGE:6856235), complete cds
          Length = 5514

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  ccaaacaagggtgcattcac 264
            ||||||||||||||||||||
Sbjct: 2776 ccaaacaagggtgcattcac 2795
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>emb|BX294656.8| Zebrafish DNA sequence from clone CH211-238M13, complete sequence
          Length = 162077

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    attttactttaatatgttta 31
             ||||||||||||||||||||
Sbjct: 98982 attttactttaatatgttta 99001
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>gb|AC000096.17| Mus musculus Chromosome 16 BAC Clone bd3-6 Syntenic To Homo sapiens
              22q11.2 DGCR Region, complete sequence
          Length = 127343

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     actttaatatgtttagtaat 36
              ||||||||||||||||||||
Sbjct: 112086 actttaatatgtttagtaat 112105
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>gb|AC004857.1|AC004857 Homo sapiens PAC clone RP4-685A2 from 7p21-p22, complete sequence
          Length = 109359

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 576   tggcatatgcaataaattct 595
             ||||||||||||||||||||
Sbjct: 52816 tggcatatgcaataaattct 52835
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>gb|AC154552.2| Mus musculus BAC clone RP23-414P13 from 13, complete sequence
          Length = 187806

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    tttggtcaaattacctaatc 203
              ||||||||||||||||||||
Sbjct: 187091 tttggtcaaattacctaatc 187072
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>emb|Z74739.1|HS214K23 Human DNA sequence from clone RP1-214K23 on chromosome 13. Contains the
             3' end of a novel gene, a novel gene, the 5' end of the
             BRCA2 gene for early onset breast cancer protein 2, ESTs,
             STSs and GSSs, complete sequence
          Length = 127079

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   aattacctaatccatcattt 211
             ||||||||||||||||||||
Sbjct: 45034 aattacctaatccatcattt 45015
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>gb|AC155268.1| Mus musculus BAC clone RP23-204K22 from 16, complete sequence
          Length = 218381

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    ccaaacaagggtgcattcac 264
              ||||||||||||||||||||
Sbjct: 154512 ccaaacaagggtgcattcac 154493
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>emb|AL121654.1|CNS01DS4 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 26F21 of
              library CITB_978_SKB from chromosome 2 of Homo sapiens
              (Human)
          Length = 153624

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     aatatgtttagtaatgttct 41
              ||||||||||||||||||||
Sbjct: 104275 aatatgtttagtaatgttct 104294
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>gb|AC124490.4| Mus musculus BAC clone RP23-453I1 from 16, complete sequence
          Length = 189215

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   gtttggttttgggatgtttg 124
             ||||||||||||||||||||
Sbjct: 23763 gtttggttttgggatgtttg 23744
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>gb|AC078895.34| Mus musculus strain C57BL/6J chromosome 16 clone rp23-372h6, complete
              sequence
          Length = 211256

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     actttaatatgtttagtaat 36
              ||||||||||||||||||||
Sbjct: 132430 actttaatatgtttagtaat 132411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,944,210
Number of Sequences: 3902068
Number of extensions: 5944210
Number of successful extensions: 134725
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134577
Number of HSP's gapped (non-prelim): 145
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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