ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3l20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
2dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic D... 176 6e-41
3ref|NM_104193.3| Arabidopsis thaliana ATP binding / GTP binding ... 56 1e-04
4emb|BX842486.1|CNS0AAKF Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
5gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis thaliana... 56 1e-04
6gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L... 56 1e-04
7emb|AJ332986.1|HSA332986 Homo sapiens genomic sequence surroundi... 44 0.53
8gb|AC160630.1| Uncultured bacterium zdt-25h14 clone zdt-25h14, c... 42 2.1
9emb|BX890557.9| Zebrafish DNA sequence from clone DKEYP-8B8, com... 42 2.1
10emb|AL844591.6| Mouse DNA sequence from clone RP23-414J11 on chr... 42 2.1
11gb|AF252832.4| Homo sapiens chromosome 8 clone CTD-2017E4 map ce... 40 8.3
12gb|AF161801.5| Homo sapiens chromosome 8 clone GS1-2g21 map p12,... 40 8.3
13gb|AC131744.3| Mus musculus BAC clone RP23-50E10 from chromosome... 40 8.3
14gb|AC125344.2| Mus musculus BAC clone RP24-332H21 from 12, compl... 40 8.3
15gb|AC109253.9| Mus musculus, clone RP23-351D8, complete sequence 40 8.3
16emb|AL138702.8| Human DNA sequence from clone RP11-407E23 on chr... 40 8.3
17gb|AC100818.2| Homo sapiens chromosome 8, clone RP11-473J6, comp... 40 8.3
18gb|AC044907.16| Homo sapiens chromosome 15, clone RP11-127F21, c... 40 8.3
19gb|AC022558.9| Homo sapiens chromosome 15, clone RP11-90B9, comp... 40 8.3
20gb|AC022915.14| Homo sapiens chromosome 8, clone RP11-770E5, com... 40 8.3
21gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome... 40 8.3
22gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complet... 40 8.3
23gb|AC124265.7| Homo sapiens chromosome 8, clone CTD-2017E4, comp... 40 8.3
24gb|AY263837.1| Crenicichla alta 16S large subunit ribosomal RNA ... 40 8.3
25dbj|AP000083.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 8.3 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  176 bits (89), Expect = 6e-41
 Identities = 155/177 (87%)
 Strand = Plus / Plus

                                                                            
Query: 309      acagcgtccgcgagatgttcttgaactcgcttaaacaggacagcaaaatcttttgacgtt 368
                |||| |||||||| ||||||||||| ||  | |||||||||| |||||||||||||||||
Sbjct: 31301796 acagggtccgcgatatgttcttgaattcattcaaacaggacaacaaaatcttttgacgtt 31301855

                                                                            
Query: 369      tcagcagagactggcgctcattctggatacaatcaactgcgccgggagacacgaacatgt 428
                ||||||||||||||||||| |||||||||  |||||| || || || | |||||||||||
Sbjct: 31301856 tcagcagagactggcgctcgttctggatagcatcaacagcaccaggtgccacgaacatgt 31301915

                                                                         
Query: 429      ccatgaacttctcatcatttacagcaaacagctcgaatccaagtgctaaaaacaacc 485
                |||||||  | || ||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 31301916 ccatgaatctatcgtcattaacagcaaacagctcgaagccaagtgccaaaaacaacc 31301972



 Score =  133 bits (67), Expect = 7e-28
 Identities = 103/114 (90%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                            
Query: 494      catggtgttaagaatccagagttcaatgcagatggaacattcctttcaatcangacttct 553
                ||||| || |||||||||||||||| |||||| || |||||||||||||||| |||||| 
Sbjct: 31302672 catggggtcaagaatccagagttcagtgcagagggtacattcctttcaatcaggacttcc 31302731

                                                                      
Query: 554      cgcattttggcaaagtactgagcagatattgagcatatgcttggagtacgatga 607
                ||||||||||| || ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 31302732 cgcattttggcgaaatactgagcagatattgagcatatgc-tggagtatgatga 31302784
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>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0481E12
          Length = 161563

 Score =  176 bits (89), Expect = 6e-41
 Identities = 155/177 (87%)
 Strand = Plus / Plus

                                                                         
Query: 309   acagcgtccgcgagatgttcttgaactcgcttaaacaggacagcaaaatcttttgacgtt 368
             |||| |||||||| ||||||||||| ||  | |||||||||| |||||||||||||||||
Sbjct: 56079 acagggtccgcgatatgttcttgaattcattcaaacaggacaacaaaatcttttgacgtt 56138

                                                                         
Query: 369   tcagcagagactggcgctcattctggatacaatcaactgcgccgggagacacgaacatgt 428
             ||||||||||||||||||| |||||||||  |||||| || || || | |||||||||||
Sbjct: 56139 tcagcagagactggcgctcgttctggatagcatcaacagcaccaggtgccacgaacatgt 56198

                                                                      
Query: 429   ccatgaacttctcatcatttacagcaaacagctcgaatccaagtgctaaaaacaacc 485
             |||||||  | || ||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 56199 ccatgaatctatcgtcattaacagcaaacagctcgaagccaagtgccaaaaacaacc 56255



 Score =  133 bits (67), Expect = 7e-28
 Identities = 103/114 (90%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                         
Query: 494   catggtgttaagaatccagagttcaatgcagatggaacattcctttcaatcangacttct 553
             ||||| || |||||||||||||||| |||||| || |||||||||||||||| |||||| 
Sbjct: 56955 catggggtcaagaatccagagttcagtgcagagggtacattcctttcaatcaggacttcc 57014

                                                                   
Query: 554   cgcattttggcaaagtactgagcagatattgagcatatgcttggagtacgatga 607
             ||||||||||| || ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 57015 cgcattttggcgaaatactgagcagatattgagcatatgc-tggagtatgatga 57067
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>ref|NM_104193.3| Arabidopsis thaliana ATP binding / GTP binding / GTPase AT1G53140
            mRNA, complete cds
          Length = 2640

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 419  acgaacatgtccatgaacttctcatcatttacagcaaacagctcgaatccaagtgc 474
            |||||||||||||||||||| || ||||| || ||||| || || |||||||||||
Sbjct: 2375 acgaacatgtccatgaacttgtcgtcattcactgcaaatagatccaatccaagtgc 2320
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>emb|BX842486.1|CNS0AAKF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH20ZD08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2599

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 419  acgaacatgtccatgaacttctcatcatttacagcaaacagctcgaatccaagtgc 474
            |||||||||||||||||||| || ||||| || ||||| || || |||||||||||
Sbjct: 2374 acgaacatgtccatgaacttgtcgtcattcactgcaaatagatccaatccaagtgc 2319
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>gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome
            I, complete sequence
          Length = 130235

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 419  acgaacatgtccatgaacttctcatcatttacagcaaacagctcgaatccaagtgc 474
            |||||||||||||||||||| || ||||| || ||||| || || |||||||||||
Sbjct: 1234 acgaacatgtccatgaacttgtcgtcattcactgcaaatagatccaatccaagtgc 1179
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>gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete
             sequence
          Length = 110611

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 419   acgaacatgtccatgaacttctcatcatttacagcaaacagctcgaatccaagtgc 474
             |||||||||||||||||||| || ||||| || ||||| || || |||||||||||
Sbjct: 23612 acgaacatgtccatgaacttgtcgtcattcactgcaaatagatccaatccaagtgc 23667
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>emb|AJ332986.1|HSA332986 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-DB10RS
          Length = 641

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 282 ggaagaagcgccggacagatcttcat 307
           ||||||||||||||||||||| ||||
Sbjct: 76  ggaagaagcgccggacagatcgtcat 51
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>gb|AC160630.1| Uncultured bacterium zdt-25h14 clone zdt-25h14, complete sequence
          Length = 37210

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   gacagagaatacaaagaacag 168
             |||||||||||||||||||||
Sbjct: 13157 gacagagaatacaaagaacag 13137



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   acagagaatacaaagaacag 127
             ||||||||||||||||||||
Sbjct: 13156 acagagaatacaaagaacag 13137
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>emb|BX890557.9| Zebrafish DNA sequence from clone DKEYP-8B8, complete sequence
          Length = 170862

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   acaataaaacaaccattaata 230
             |||||||||||||||||||||
Sbjct: 57829 acaataaaacaaccattaata 57809
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>emb|AL844591.6| Mouse DNA sequence from clone RP23-414J11 on chromosome 2, complete
              sequence
          Length = 215003

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 146    gagacagagaatacaaagaac 166
              |||||||||||||||||||||
Sbjct: 128242 gagacagagaatacaaagaac 128222
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>gb|AF252832.4| Homo sapiens chromosome 8 clone CTD-2017E4 map cen, complete sequence
          Length = 139288

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gggatttgacatacagagaa 115
             ||||||||||||||||||||
Sbjct: 11752 gggatttgacatacagagaa 11771
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>gb|AF161801.5| Homo sapiens chromosome 8 clone GS1-2g21 map p12, complete sequence
          Length = 138341

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     gggatttgacatacagagaa 115
              ||||||||||||||||||||
Sbjct: 106364 gggatttgacatacagagaa 106383
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>gb|AC131744.3| Mus musculus BAC clone RP23-50E10 from chromosome 3, complete sequence
          Length = 225416

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ttgacatacagagaatacaa 120
              ||||||||||||||||||||
Sbjct: 142333 ttgacatacagagaatacaa 142352
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>gb|AC125344.2| Mus musculus BAC clone RP24-332H21 from 12, complete sequence
          Length = 179908

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tatatagccccaatatctga 41
              ||||||||||||||||||||
Sbjct: 155234 tatatagccccaatatctga 155215
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>gb|AC109253.9| Mus musculus, clone RP23-351D8, complete sequence
          Length = 254578

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    aaggggcatggagacagaga 155
              ||||||||||||||||||||
Sbjct: 227338 aaggggcatggagacagaga 227319
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>emb|AL138702.8| Human DNA sequence from clone RP11-407E23 on chromosome 13, complete
             sequence
          Length = 191567

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    gggataacatacatgttcaa 63
             ||||||||||||||||||||
Sbjct: 82702 gggataacatacatgttcaa 82683
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>gb|AC100818.2| Homo sapiens chromosome 8, clone RP11-473J6, complete sequence
          Length = 178856

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gggatttgacatacagagaa 115
             ||||||||||||||||||||
Sbjct: 31288 gggatttgacatacagagaa 31269
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>gb|AC044907.16| Homo sapiens chromosome 15, clone RP11-127F21, complete sequence
          Length = 170793

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 205    caacaacaataaaacaaccattaa 228
              |||||||||||||| |||||||||
Sbjct: 147071 caacaacaataaaaaaaccattaa 147048
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>gb|AC022558.9| Homo sapiens chromosome 15, clone RP11-90B9, complete sequence
          Length = 186403

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 205    caacaacaataaaacaaccattaa 228
              |||||||||||||| |||||||||
Sbjct: 154701 caacaacaataaaaaaaccattaa 154724
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>gb|AC022915.14| Homo sapiens chromosome 8, clone RP11-770E5, complete sequence
          Length = 188408

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 214    taaaacaaccattaataactatgt 237
              |||| |||||||||||||||||||
Sbjct: 121621 taaagcaaccattaataactatgt 121598
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>gb|AC154567.3| Mus musculus BAC clone RP23-245F1 from chromosome 14, complete sequence
          Length = 155103

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    aaggggcatggagacagaga 155
              ||||||||||||||||||||
Sbjct: 126733 aaggggcatggagacagaga 126752
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>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence
          Length = 151319

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tacagagaatacaaagaaca 126
             ||||||||||||||||||||
Sbjct: 44520 tacagagaatacaaagaaca 44539
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>gb|AC124265.7| Homo sapiens chromosome 8, clone CTD-2017E4, complete sequence
          Length = 139288

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gggatttgacatacagagaa 115
             ||||||||||||||||||||
Sbjct: 11751 gggatttgacatacagagaa 11770
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>gb|AY263837.1| Crenicichla alta 16S large subunit ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 533

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 taaaacaaccattaataact 233
           ||||||||||||||||||||
Sbjct: 224 taaaacaaccattaataact 243
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>dbj|AP000083.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 19/19
          Length = 102456

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gggatttgacatacagagaa 115
             ||||||||||||||||||||
Sbjct: 74719 gggatttgacatacagagaa 74700


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,633,837
Number of Sequences: 3902068
Number of extensions: 5633837
Number of successful extensions: 104087
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104007
Number of HSP's gapped (non-prelim): 80
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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