ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3l15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ430054.1|OSA430054 Oryza sativa partial myb15 gene for tra... 46 0.11
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
3dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
4gb|AC162034.6| Mus musculus chromosome 7, clone RP23-285B12, com... 42 1.7
5gb|AC161197.9| Mus musculus chromosome 7, clone RP23-179K11, com... 42 1.7
6gb|AY279342.1| Drosophila mimetica xanthine dehydrogenase (Xdh) ... 40 6.7
7emb|AL445222.9| Human DNA sequence from clone RP11-356B19 on chr... 40 6.7
8emb|AL356128.27| Human DNA sequence from clone RP11-366I13 on ch... 40 6.7
9gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, comp... 40 6.7
10gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 1... 40 6.7
11ref|NR_002673.1| Caenorhabditis elegans strain Bristol N2 chromo... 40 6.7
12dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
13dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
14emb|BX648462.1|HSM808610 Homo sapiens mRNA; cDNA DKFZp781M0420 (... 40 6.7
15emb|Z81052.1|CED2023 Caenorhabditis elegans Cosmid D2023, comple... 40 6.7

>emb|AJ430054.1|OSA430054 Oryza sativa partial myb15 gene for transcription factor, exons 1-4
          Length = 1586

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 222 taataattatgctacagtatctc 244
           |||||||||||||||||||||||
Sbjct: 951 taataattatgctacagtatctc 973



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 222      taataattatgctacagtatctc 244
                |||||||||||||||||||||||
Sbjct: 36119326 taataattatgctacagtatctc 36119348



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 14       aagcatatactgtcatgcaaatat 37
                ||||||||||||||||||| ||||
Sbjct: 31632754 aagcatatactgtcatgcatatat 31632777



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>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0408C03
          Length = 141273

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 222    taataattatgctacagtatctc 244
              |||||||||||||||||||||||
Sbjct: 132051 taataattatgctacagtatctc 132073



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>gb|AC162034.6| Mus musculus chromosome 7, clone RP23-285B12, complete sequence
          Length = 197907

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     gggaatagccaagcatatact 24
             |||||||||||||||||||||
Sbjct: 27088 gggaatagccaagcatatact 27108



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>gb|AC161197.9| Mus musculus chromosome 7, clone RP23-179K11, complete sequence
          Length = 240657

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     gggaatagccaagcatatact 24
             |||||||||||||||||||||
Sbjct: 85257 gggaatagccaagcatatact 85237



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>gb|AY279342.1| Drosophila mimetica xanthine dehydrogenase (Xdh) gene, exons 2
            through 5 and partial cds
          Length = 5173

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  ttgtgaatttatctgatgtt 134
            ||||||||||||||||||||
Sbjct: 3331 ttgtgaatttatctgatgtt 3350



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>emb|AL445222.9| Human DNA sequence from clone RP11-356B19 on chromosome 9 Contains the 3'
              end of the gene for a novel protein (DKFZp761J1523), the
              SLC2A8 gene for solute carrier family 2, (facilitated
              glucose transporter) member 8 (glucose transporter
              X1)(GLUT8, GLUTX1), the ZNF79 gene for zinc finger protein
              79 (pT7), the RPL12 gene for ribosomal protein L12 (60S
              ribosomal protein L12), the gene for a novel protein, the
              gene for a novel protein (DKFZP434H0820)(FLJ13518,
              FLJ22151, FLJ22298) and four Cpg islands, complete sequence
          Length = 225370

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    ttaaccatgactccgtgtca 432
              ||||||||||||||||||||
Sbjct: 123907 ttaaccatgactccgtgtca 123888



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>emb|AL356128.27| Human DNA sequence from clone RP11-366I13 on chromosome 10 Contains
            the IDE gene for insulin-degrading enzyme, the 5' end of
            the KIF11 gene for kinesin family member 11, a ribosomal
            protein L11 (RPL11) pseudogene and two CpG islands,
            complete sequence
          Length = 191935

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 338  gagtgatcaacagcagctct 357
            ||||||||||||||||||||
Sbjct: 2980 gagtgatcaacagcagctct 2999



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>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence
          Length = 238599

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    ggggaggatggcaggttccg 398
              ||||||||||||||||||||
Sbjct: 106385 ggggaggatggcaggttccg 106404



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>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete sequence
          Length = 200690

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaatgaagcctggcctaaaa 185
              ||||||||||||||||||||
Sbjct: 109184 aaatgaagcctggcctaaaa 109165



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>ref|NR_002673.1| Caenorhabditis elegans strain Bristol N2 chromosome V
          Length = 831

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 66  aagcagagaatttgagaagg 85
           ||||||||||||||||||||
Sbjct: 112 aagcagagaatttgagaagg 93



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>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503C12
          Length = 147180

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    aagcatatactgtcatgcaaatat 37
             ||||||||||||||||||| ||||
Sbjct: 46486 aagcatatactgtcatgcatatat 46509



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>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     aagcatatactgtcatgcaaatat 37
              ||||||||||||||||||| ||||
Sbjct: 145777 aagcatatactgtcatgcatatat 145800



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>emb|BX648462.1|HSM808610 Homo sapiens mRNA; cDNA DKFZp781M0420 (from clone DKFZp781M0420)
          Length = 5582

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 338  gagtgatcaacagcagctct 357
            ||||||||||||||||||||
Sbjct: 5250 gagtgatcaacagcagctct 5231



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>emb|Z81052.1|CED2023 Caenorhabditis elegans Cosmid D2023, complete sequence
          Length = 40344

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   aagcagagaatttgagaagg 85
            ||||||||||||||||||||
Sbjct: 4059 aagcagagaatttgagaagg 4040


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,889,330
Number of Sequences: 3902068
Number of extensions: 3889330
Number of successful extensions: 69005
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68942
Number of HSP's gapped (non-prelim): 63
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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