| Clone Name | rbags3l15 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ430054.1|OSA430054 Oryza sativa partial myb15 gene for transcription factor, exons 1-4 Length = 1586 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 taataattatgctacagtatctc 244 ||||||||||||||||||||||| Sbjct: 951 taataattatgctacagtatctc 973
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 taataattatgctacagtatctc 244 ||||||||||||||||||||||| Sbjct: 36119326 taataattatgctacagtatctc 36119348 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aagcatatactgtcatgcaaatat 37 ||||||||||||||||||| |||| Sbjct: 31632754 aagcatatactgtcatgcatatat 31632777
>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408C03 Length = 141273 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 taataattatgctacagtatctc 244 ||||||||||||||||||||||| Sbjct: 132051 taataattatgctacagtatctc 132073
>gb|AC162034.6| Mus musculus chromosome 7, clone RP23-285B12, complete sequence Length = 197907 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gggaatagccaagcatatact 24 ||||||||||||||||||||| Sbjct: 27088 gggaatagccaagcatatact 27108
>gb|AC161197.9| Mus musculus chromosome 7, clone RP23-179K11, complete sequence Length = 240657 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 gggaatagccaagcatatact 24 ||||||||||||||||||||| Sbjct: 85257 gggaatagccaagcatatact 85237
>gb|AY279342.1| Drosophila mimetica xanthine dehydrogenase (Xdh) gene, exons 2 through 5 and partial cds Length = 5173 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ttgtgaatttatctgatgtt 134 |||||||||||||||||||| Sbjct: 3331 ttgtgaatttatctgatgtt 3350
>emb|AL445222.9| Human DNA sequence from clone RP11-356B19 on chromosome 9 Contains the 3' end of the gene for a novel protein (DKFZp761J1523), the SLC2A8 gene for solute carrier family 2, (facilitated glucose transporter) member 8 (glucose transporter X1)(GLUT8, GLUTX1), the ZNF79 gene for zinc finger protein 79 (pT7), the RPL12 gene for ribosomal protein L12 (60S ribosomal protein L12), the gene for a novel protein, the gene for a novel protein (DKFZP434H0820)(FLJ13518, FLJ22151, FLJ22298) and four Cpg islands, complete sequence Length = 225370 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 ttaaccatgactccgtgtca 432 |||||||||||||||||||| Sbjct: 123907 ttaaccatgactccgtgtca 123888
>emb|AL356128.27| Human DNA sequence from clone RP11-366I13 on chromosome 10 Contains the IDE gene for insulin-degrading enzyme, the 5' end of the KIF11 gene for kinesin family member 11, a ribosomal protein L11 (RPL11) pseudogene and two CpG islands, complete sequence Length = 191935 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gagtgatcaacagcagctct 357 |||||||||||||||||||| Sbjct: 2980 gagtgatcaacagcagctct 2999
>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence Length = 238599 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ggggaggatggcaggttccg 398 |||||||||||||||||||| Sbjct: 106385 ggggaggatggcaggttccg 106404
>gb|AC068714.9| Homo sapiens chromosome 15 clone RP11-315O8 map 15q15, complete sequence Length = 200690 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aaatgaagcctggcctaaaa 185 |||||||||||||||||||| Sbjct: 109184 aaatgaagcctggcctaaaa 109165
>ref|NR_002673.1| Caenorhabditis elegans strain Bristol N2 chromosome V Length = 831 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aagcagagaatttgagaagg 85 |||||||||||||||||||| Sbjct: 112 aagcagagaatttgagaagg 93
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aagcatatactgtcatgcaaatat 37 ||||||||||||||||||| |||| Sbjct: 46486 aagcatatactgtcatgcatatat 46509
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 aagcatatactgtcatgcaaatat 37 ||||||||||||||||||| |||| Sbjct: 145777 aagcatatactgtcatgcatatat 145800
>emb|BX648462.1|HSM808610 Homo sapiens mRNA; cDNA DKFZp781M0420 (from clone DKFZp781M0420) Length = 5582 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gagtgatcaacagcagctct 357 |||||||||||||||||||| Sbjct: 5250 gagtgatcaacagcagctct 5231
>emb|Z81052.1|CED2023 Caenorhabditis elegans Cosmid D2023, complete sequence Length = 40344 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aagcagagaatttgagaagg 85 |||||||||||||||||||| Sbjct: 4059 aagcagagaatttgagaagg 4040 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,889,330 Number of Sequences: 3902068 Number of extensions: 3889330 Number of successful extensions: 69005 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68942 Number of HSP's gapped (non-prelim): 63 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)