ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4a15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.58
2dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.58
3dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.58
4dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.58
5dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.58
6gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromo... 38 9.1
7gb|AC069152.5| Homo sapiens BAC clone RP11-331L17 from UL, compl... 38 9.1
8gb|AC006015.5| Homo sapiens PAC clone RP5-965K10 from 7, complet... 38 9.1
9emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chr... 38 9.1
10emb|BX571678.14| Zebrafish DNA sequence from clone DKEY-271J15 i... 38 9.1
11gb|AC104122.2| Homo sapiens chromosome 5 clone RP11-410P18, comp... 38 9.1
12gb|AC093510.2| Homo sapiens chromosome 5 clone CTD-2373J6, compl... 38 9.1
13gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 38 9.1
14gb|AC023812.7|AC023812 Homo sapiens chromosome 3 clone 95e11 map... 38 9.1
15gb|AC020751.5|AC020751 Homo sapiens chromosome 3 clone RP11-10H6... 38 9.1
16gb|AC122133.4| Homo sapiens BAC clone RP11-220H4 from 7, complet... 38 9.1
17gb|AC152721.3| Mus musculus BAC clone RP23-425F13 from chromosom... 38 9.1
18gb|AC145929.4| Gallus gallus BAC clone CH261-31A6 from chromosom... 38 9.1
19gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3... 38 9.1 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 159      agcgaagatggctccaacatc 179
                |||||||||||||||||||||
Sbjct: 27343812 agcgaagatggctccaacatc 27343792
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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   agcgaagatggctccaacatc 179
             |||||||||||||||||||||
Sbjct: 86639 agcgaagatggctccaacatc 86619
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>dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G24, full
           insert sequence
          Length = 2183

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 agcgaagatggctccaacatc 179
           |||||||||||||||||||||
Sbjct: 59  agcgaagatggctccaacatc 79
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>dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full
           insert sequence
          Length = 2433

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 agcgaagatggctccaacatc 179
           |||||||||||||||||||||
Sbjct: 251 agcgaagatggctccaacatc 271
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>dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F12, full
           insert sequence
          Length = 2276

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 agcgaagatggctccaacatc 179
           |||||||||||||||||||||
Sbjct: 60  agcgaagatggctccaacatc 80
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>gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromosome 7, complete
             sequence
          Length = 163934

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   agcaggaacaaagatacat 147
             |||||||||||||||||||
Sbjct: 26181 agcaggaacaaagatacat 26163
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>gb|AC069152.5| Homo sapiens BAC clone RP11-331L17 from UL, complete sequence
          Length = 191433

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   agcaggaacaaagatacat 147
             |||||||||||||||||||
Sbjct: 88017 agcaggaacaaagatacat 88035
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>gb|AC006015.5| Homo sapiens PAC clone RP5-965K10 from 7, complete sequence
          Length = 112417

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 129   agcaggaacaaagatacat 147
             |||||||||||||||||||
Sbjct: 53636 agcaggaacaaagatacat 53654
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>emb|AL512424.14| Human DNA sequence from clone RP11-453E2 on chromosome 10 Contains the
             5' end of the SLIT1 gene for slit homolog 1 (Drosophila),
             a novel gene and a CpG island, complete sequence
          Length = 172510

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    caggcaggtaggtggacag 103
             |||||||||||||||||||
Sbjct: 18703 caggcaggtaggtggacag 18721
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>emb|BX571678.14| Zebrafish DNA sequence from clone DKEY-271J15 in linkage group 16,
              complete sequence
          Length = 252671

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 124    agcagagcaggaacaaaga 142
              |||||||||||||||||||
Sbjct: 109546 agcagagcaggaacaaaga 109528
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>gb|AC104122.2| Homo sapiens chromosome 5 clone RP11-410P18, complete sequence
          Length = 142636

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 122    gcagcagagcaggaacaaa 140
              |||||||||||||||||||
Sbjct: 126760 gcagcagagcaggaacaaa 126742
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>gb|AC093510.2| Homo sapiens chromosome 5 clone CTD-2373J6, complete sequence
          Length = 125933

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 122   gcagcagagcaggaacaaa 140
             |||||||||||||||||||
Sbjct: 52290 gcagcagagcaggaacaaa 52272
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>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 131    caggaacaaagatacatnaggt 152
              ||||||||||||||||| ||||
Sbjct: 172767 caggaacaaagatacatcaggt 172788
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>gb|AC023812.7|AC023812 Homo sapiens chromosome 3 clone 95e11 map 3p, complete sequence
          Length = 170807

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 131   caggaacaaagatacatnaggt 152
             ||||||||||||||||| ||||
Sbjct: 25501 caggaacaaagatacatcaggt 25522
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>gb|AC020751.5|AC020751 Homo sapiens chromosome 3 clone RP11-10H6 map 3p, complete sequence
          Length = 170631

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 131   caggaacaaagatacatnaggt 152
             ||||||||||||||||| ||||
Sbjct: 47104 caggaacaaagatacatcaggt 47125
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>gb|AC122133.4| Homo sapiens BAC clone RP11-220H4 from 7, complete sequence
          Length = 191103

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 129   agcaggaacaaagatacat 147
             |||||||||||||||||||
Sbjct: 27257 agcaggaacaaagatacat 27239
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>gb|AC152721.3| Mus musculus BAC clone RP23-425F13 from chromosome 5, complete sequence
          Length = 221637

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 162    gaagatggctccaacatca 180
              |||||||||||||||||||
Sbjct: 204907 gaagatggctccaacatca 204925
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>gb|AC145929.4| Gallus gallus BAC clone CH261-31A6 from chromosome unknown, complete
             sequence
          Length = 172539

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 124   agcagagcaggaacaaaga 142
             |||||||||||||||||||
Sbjct: 57950 agcagagcaggaacaaaga 57968
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>gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3p, complete sequence
          Length = 179814

 Score = 38.2 bits (19), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 131   caggaacaaagatacatnaggt 152
             ||||||||||||||||| ||||
Sbjct: 62807 caggaacaaagatacatcaggt 62828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 893,095
Number of Sequences: 3902068
Number of extensions: 893095
Number of successful extensions: 58663
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58610
Number of HSP's gapped (non-prelim): 53
length of query: 184
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 162
effective length of database: 17,147,199,772
effective search space: 2777846363064
effective search space used: 2777846363064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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