ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3l08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF475119.1| Triticum aestivum succinate dehydrogenase subunit... 587 e-164
2dbj|AK058482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
3ref|XM_478436.1| Oryza sativa (japonica cultivar-group), mRNA 224 3e-55
4ref|XM_463920.1| Oryza sativa (japonica cultivar-group), mRNA 176 5e-41
5gb|AF362741.1|AF362741 Oryza sativa succinate dehydrogenase subu... 176 5e-41
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 176 5e-41
7dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 176 5e-41
8dbj|AK103260.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 5e-41
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
10dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
11gb|AF362742.1|AF362742 Oryza sativa succinate dehydrogenase subu... 168 1e-38
12gb|BT017399.1| Zea mays clone EL01N0328G05.c mRNA sequence 100 1e-17
13gb|AY108580.1| Zea mays PCO078974 mRNA sequence 100 1e-17
14emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C2... 44 0.50
15ref|XM_552922.1| Anopheles gambiae str. PEST ENSANGP00000027726 ... 42 2.0
16gb|AC121820.2| Mus musculus BAC clone RP23-460N4 from 6, complet... 40 7.9
17gb|AY639544.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 1... 40 7.9
18gb|AY639543.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 1... 40 7.9
19gb|AY639542.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100501 1... 40 7.9
20emb|AJ884762.1| Gigaspora rosea dispersed repeat GrosRE3-T3, clo... 40 7.9
21emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chr... 40 7.9
22emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chro... 40 7.9
23gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, co... 40 7.9
24gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 7.9
25gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, com... 40 7.9
26gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, com... 40 7.9
27gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 7.9
28gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, compl... 40 7.9
29emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chr... 40 7.9
30dbj|AB029488.1| Homo sapiens C11orf21 mRNA, complete cds 40 7.9 
>gb|AF475119.1| Triticum aestivum succinate dehydrogenase subunit 3 mRNA, partial
           cds
          Length = 399

 Score =  587 bits (296), Expect = e-164
 Identities = 367/392 (93%)
 Strand = Plus / Minus

                                                                       
Query: 170 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 340

                                                                       
Query: 230 canttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttctt 289
           ||      |||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 339 cagcgcagcgccaaatatacggtgtgagatggagaacgtagcgctcagctgtggcttctt 280

                                                                       
Query: 290 cacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttgt 349
           || |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 279 cagaggaagatggggagacagtgggcggttcgcaacaggagtcgacaggggacgacttgt 220

                                                                       
Query: 350 atgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaaga 409
           ||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||||||
Sbjct: 219 atgcagggatcggtttccagatggaggcatcttctgtcgcagagctcctaagggagaaga 160

                                                                       
Query: 410 tgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttgaa 469
           |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 159 tgtgtagctccttgcttgcccaatgcttgaggagtgtctaaggccatccatgttgttgaa 100

                                                                       
Query: 470 agacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtgc 529
           ||||||||||| ||||||||  ||||||||||||||||||||||| | | ||||||||||
Sbjct: 99  agacgagttggaggtaccaaaggcaccacggagagcaaatggagcgtntatcaggggtgc 40

                                           
Query: 530 aaagcgggtgttgctgtgatacttgtccattc 561
           |||||||||| |||||||||||||||||||||
Sbjct: 39  aaagcgggtgctgctgtgatacttgtccattc 8
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>dbj|AK058482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D05, full
           insert sequence
          Length = 595

 Score =  232 bits (117), Expect = 1e-57
 Identities = 324/394 (82%)
 Strand = Plus / Minus

                                                                       
Query: 169 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
           ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 502 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 443

                                                                       
Query: 229 ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
           |||      | ||||| |||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 442 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 383

                                                                       
Query: 289 tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
           ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 tcaaagggagatggggtgacagtgggcggttcgcaacaggagccgacaggggacgacttg 323

                                                                       
Query: 349 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 408
           | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 322 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 263

                                                                       
Query: 409 atgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttga 468
           ||||||||||| | ||||| |||   | |||||| ||||| ||   ||| ||||||||||
Sbjct: 262 atgtgtagctcctagcttgtccagaacttgaggattgtctcagatgatctatgttgttga 203

                                                                       
Query: 469 aagacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtg 528
           | || ||||| | | ||||||  ||||| |||||||||||||||||||| || |||||||
Sbjct: 202 aggatgagtttgagctaccaagggcaccgcggagagcaaatggagcatcactgaggggtg 143

                                             
Query: 529 caaagcgggtgttgctgtgatacttgtccattcc 562
           |||| ||||  ||||| || ||||| ||||||||
Sbjct: 142 caaaccgggccttgctctggtacttctccattcc 109
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>ref|XM_478436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 595

 Score =  224 bits (113), Expect = 3e-55
 Identities = 323/394 (81%)
 Strand = Plus / Minus

                                                                       
Query: 169 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
           ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 502 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 443

                                                                       
Query: 229 ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
           |||      | ||||| |||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 442 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 383

                                                                       
Query: 289 tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
           ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 382 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 323

                                                                       
Query: 349 tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 408
           | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 322 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 263

                                                                       
Query: 409 atgtgtagctctttgcttgcccaatgcgtgaggagtgtctaagggcatccatgttgttga 468
           ||||||||||| | ||||| |||   | |||||| ||||| ||   ||| ||||||||||
Sbjct: 262 atgtgtagctcctagcttgtccagaacttgaggattgtctcagatgatctatgttgttga 203

                                                                       
Query: 469 aagacgagttgggggtaccaaccgcaccacggagagcaaatggagcatctctcaggggtg 528
           | || ||||| | | ||||||  ||||| |||||||||||||||||||| || |||||||
Sbjct: 202 aggatgagtttgagctaccaagggcaccgcggagagcaaatggagcatcactgaggggtg 143

                                             
Query: 529 caaagcgggtgttgctgtgatacttgtccattcc 562
           |||| ||||  ||||| || ||||| ||||||||
Sbjct: 142 caaaccgggccttgctctggtacttctccattcc 109
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>ref|XM_463920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 744

 Score =  176 bits (89), Expect = 5e-41
 Identities = 182/214 (85%)
 Strand = Plus / Minus

                                                                       
Query: 169 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
           ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 557 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 498

                                                                       
Query: 229 ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
           |||      | |||||||||||||| ||||| ||||||||||| || |||||||||||||
Sbjct: 497 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 438

                                                                       
Query: 289 tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
           ||| |||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 437 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 378

                                             
Query: 349 tatgtagggatcggtttccagatggaggcatctt 382
           | || |||| ||||  |||||||||  |||||||
Sbjct: 377 tgtgcaggggtcggcatccagatgggagcatctt 344



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                       
Query: 492 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 551
           ||||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||
Sbjct: 234 gcaccacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatac 175

                       
Query: 552 ttgtccattcct 563
           || |||||||||
Sbjct: 174 ttctccattcct 163
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>gb|AF362741.1|AF362741 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene, complete
            cds; nuclear gene for mitochondrial product
          Length = 2864

 Score =  176 bits (89), Expect = 5e-41
 Identities = 182/214 (85%)
 Strand = Plus / Minus

                                                                        
Query: 169  ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
            ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 2660 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 2601

                                                                        
Query: 229  ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
            |||      | |||||||||||||| ||||| ||||||||||| || |||||||||||||
Sbjct: 2600 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 2541

                                                                        
Query: 289  tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
            ||| |||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 2540 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 2481

                                              
Query: 349  tatgtagggatcggtttccagatggaggcatctt 382
            | || |||| ||||  |||||||||  |||||||
Sbjct: 2480 tgtgcaggggtcggcatccagatgggagcatctt 2447



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 494  accacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatactt 553
            ||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||||
Sbjct: 1656 accacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatactt 1597

                      
Query: 554  gtccattcct 563
             |||||||||
Sbjct: 1596 ctccattcct 1587
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  176 bits (89), Expect = 5e-41
 Identities = 182/214 (85%)
 Strand = Plus / Minus

                                                                           
Query: 169     ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
               ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 1154066 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 1154007

                                                                           
Query: 229     ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
               |||      | |||||||||||||| ||||| ||||||||||| || |||||||||||||
Sbjct: 1154006 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 1153947

                                                                           
Query: 289     tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
               ||| |||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 1153946 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 1153887

                                                 
Query: 349     tatgtagggatcggtttccagatggaggcatctt 382
               | || |||| ||||  |||||||||  |||||||
Sbjct: 1153886 tgtgcaggggtcggcatccagatgggagcatctt 1153853



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                           
Query: 494     accacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatactt 553
               ||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||||
Sbjct: 1153062 accacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatactt 1153003

                         
Query: 554     gtccattcct 563
                |||||||||
Sbjct: 1153002 ctccattcct 1152993
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1020_C02
          Length = 124578

 Score =  176 bits (89), Expect = 5e-41
 Identities = 182/214 (85%)
 Strand = Plus / Minus

                                                                          
Query: 169    ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
              ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 106590 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 106531

                                                                          
Query: 229    ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
              |||      | |||||||||||||| ||||| ||||||||||| || |||||||||||||
Sbjct: 106530 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 106471

                                                                          
Query: 289    tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
              ||| |||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 106470 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 106411

                                                
Query: 349    tatgtagggatcggtttccagatggaggcatctt 382
              | || |||| ||||  |||||||||  |||||||
Sbjct: 106410 tgtgcaggggtcggcatccagatgggagcatctt 106377



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                          
Query: 494    accacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatactt 553
              ||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||||
Sbjct: 105586 accacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatactt 105527

                        
Query: 554    gtccattcct 563
               |||||||||
Sbjct: 105526 ctccattcct 105517
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>dbj|AK103260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124C12, full
           insert sequence
          Length = 744

 Score =  176 bits (89), Expect = 5e-41
 Identities = 182/214 (85%)
 Strand = Plus / Minus

                                                                       
Query: 169 ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
           ||||||| |||||||||| || |||| |||| || |||||||||||||| ||||||||||
Sbjct: 557 ctcagacatcaaacatgaggctgaacttggtggcgagaggaatggatataatggcagcac 498

                                                                       
Query: 229 ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
           |||      | |||||||||||||| ||||| ||||||||||| || |||||||||||||
Sbjct: 497 ccaacgcagcaccaaatatacggtgcgagatagagaatgtagcactcagctgtggcttct 438

                                                                       
Query: 289 tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
           ||| |||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||
Sbjct: 437 tcagaggaaggtggggtgacagggggcggttagcaacaggagccgacagaggatggcttg 378

                                             
Query: 349 tatgtagggatcggtttccagatggaggcatctt 382
           | || |||| ||||  |||||||||  |||||||
Sbjct: 377 tgtgcaggggtcggcatccagatgggagcatctt 344



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                       
Query: 492 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 551
           ||||||||||||||||||||||||||||| | ||| ||||| |||| |||||||||||||
Sbjct: 234 gcaccacggagagcaaatggagcatctctgaagggagcaaatcgggagttgctgtgatac 175

                       
Query: 552 ttgtccattcct 563
           || |||||||||
Sbjct: 174 ttctccattcct 163
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  170 bits (86), Expect = 3e-39
 Identities = 209/251 (83%)
 Strand = Plus / Minus

                                                                            
Query: 169      ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
                ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 20075069 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 20075010

                                                                            
Query: 229      ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
                |||      | ||||| |||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 20075009 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 20074950

                                                                            
Query: 289      tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
                ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 20074949 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 20074890

                                                                            
Query: 349      tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 408
                | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 20074889 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 20074830

                           
Query: 409      atgtgtagctc 419
                |||||||||||
Sbjct: 20074829 atgtgtagctc 20074819



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 498      cggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatacttgtcc 557
                |||||||||||||||||||| || ||||||||||| ||||  ||||| || ||||| |||
Sbjct: 20074366 cggagagcaaatggagcatcactgaggggtgcaaaccgggccttgctctggtacttctcc 20074307

                      
Query: 558      attcct 563
                ||||||
Sbjct: 20074306 attcct 20074301
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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score =  170 bits (86), Expect = 3e-39
 Identities = 209/251 (83%)
 Strand = Plus / Minus

                                                                         
Query: 169   ctcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcac 228
             ||||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| |
Sbjct: 39672 ctcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctc 39613

                                                                         
Query: 229   ccanttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttct 288
             |||      | ||||| |||||||||||||| ||||| ||||| || ||||| |||||||
Sbjct: 39612 ccagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttct 39553

                                                                         
Query: 289   tcacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttg 348
             ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 39552 tcaaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttg 39493

                                                                         
Query: 349   tatgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaag 408
             | || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | ||||
Sbjct: 39492 tgtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaag 39433

                        
Query: 409   atgtgtagctc 419
             |||||||||||
Sbjct: 39432 atgtgtagctc 39422



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 498   cggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatacttgtcc 557
             |||||||||||||||||||| || ||||||||||| ||||  ||||| || ||||| |||
Sbjct: 38969 cggagagcaaatggagcatcactgaggggtgcaaaccgggccttgctctggtacttctcc 38910

                   
Query: 558   attcct 563
             ||||||
Sbjct: 38909 attcct 38904
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>gb|AF362742.1|AF362742 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene,
           complete cds; nuclear gene for mitochondrial product
          Length = 764

 Score =  168 bits (85), Expect = 1e-38
 Identities = 208/250 (83%)
 Strand = Plus / Minus

                                                                       
Query: 170 tcagacctcaaacatgacgccgaacctggtagcaagaggaatggatatgatggcagcacc 229
           |||||| |||||||||| || |||  |||| ||||||||||||||||| ||| |||| ||
Sbjct: 764 tcagacatcaaacatgaggctgaatttggtggcaagaggaatggatataatgacagctcc 705

                                                                       
Query: 230 canttttncgccaaatatacggtgtgagatggagaatgtagcgctnagctgtggcttctt 289
           ||      | ||||| |||||||||||||| ||||| ||||| || ||||| ||||||||
Sbjct: 704 cagggcagcaccaaaaatacggtgtgagattgagaacgtagcactcagctgcggcttctt 645

                                                                       
Query: 290 cacaggaagatggggagacagtgggcggttcgcaacaggagccgacaggggacggcttgt 349
           || ||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 644 caaagggagatggggtgacagtgggcggtttgcaacaggagccgacaggggacgacttgt 585

                                                                       
Query: 350 atgtagggatcggtttccagatggaggcatcttctgtcgcagggctcctaacagagaaga 409
            || |||  |||||||||||||||   ||||||  ||| ||| |||||||   | |||||
Sbjct: 584 gtgcaggagtcggtttccagatgggaacatctttggtctcagagctcctaggggtgaaga 525

                     
Query: 410 tgtgtagctc 419
           ||||||||||
Sbjct: 524 tgtgtagctc 515



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 498 cggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatacttgtcc 557
           |||||||||||||||||||| || ||||||||||| ||||  ||||| || ||||| |||
Sbjct: 62  cggagagcaaatggagcatcactgaggggtgcaaaccgggccttgctctggtacttctcc 3

             
Query: 558 at 559
           ||
Sbjct: 2   at 1
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>gb|BT017399.1| Zea mays clone EL01N0328G05.c mRNA sequence
          Length = 726

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 115/137 (83%)
 Strand = Plus / Minus

                                                                       
Query: 246 atacggtgtgagatggagaatgtagcgctnagctgtggcttcttcacaggaagatgggga 305
           |||||||| ||||| ||||| |||||||| | |||||||||||||| |||||||||||| 
Sbjct: 392 atacggtgcgagatagagaaagtagcgctgaactgtggcttcttcagaggaagatggggc 333

                                                                       
Query: 306 gacagtgggcggttcgcaacaggagccgacaggggacggcttgtatgtagggatcggttt 365
           ||||| ||||||||||| |||| ||  |||||||| | ||| ||||| |||  ||| |||
Sbjct: 332 gacagcgggcggttcgctacagcagatgacagggggcagctcgtatgcaggagtcgattt 273

                            
Query: 366 ccagatggaggcatctt 382
           |||| || || ||||||
Sbjct: 272 ccaggtgtagacatctt 256



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                       
Query: 492 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 551
           ||||||||||| ||||| ||||  |||||||  ||||||||  | |||||||||| ||||
Sbjct: 182 gcaccacggagggcaaacggagtctctctcaatggtgcaaattgagtgttgctgttatac 123

                    
Query: 552 ttgtccatt 560
             |||||||
Sbjct: 122 aggtccatt 114
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>gb|AY108580.1| Zea mays PCO078974 mRNA sequence
          Length = 816

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 115/137 (83%)
 Strand = Plus / Minus

                                                                       
Query: 246 atacggtgtgagatggagaatgtagcgctnagctgtggcttcttcacaggaagatgggga 305
           |||||||| ||||| ||||| |||||||| | |||||||||||||| |||||||||||| 
Sbjct: 533 atacggtgcgagatagagaaagtagcgctgaactgtggcttcttcagaggaagatggggc 474

                                                                       
Query: 306 gacagtgggcggttcgcaacaggagccgacaggggacggcttgtatgtagggatcggttt 365
           ||||| ||||||||||| |||| ||  |||||||| | ||| ||||| |||  ||| |||
Sbjct: 473 gacagcgggcggttcgctacagcagatgacagggggcagctcgtatgcaggagtcgattt 414

                            
Query: 366 ccagatggaggcatctt 382
           |||| || || ||||||
Sbjct: 413 ccaggtgtagacatctt 397



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                       
Query: 492 gcaccacggagagcaaatggagcatctctcaggggtgcaaagcgggtgttgctgtgatac 551
           ||||||||||| ||||| ||||  |||||||  ||||||||  | |||||||||| ||||
Sbjct: 323 gcaccacggagggcaaacggagtctctctcaatggtgcaaattgagtgttgctgttatac 264

                    
Query: 552 ttgtccatt 560
           || ||||||
Sbjct: 263 ttctccatt 255
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>emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C21 on chromosome 1p22.2-31.1
             Contains STSs and GSSs, complete sequence
          Length = 143163

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 440   ggagtgtctaagggcatccatg 461
             ||||||||||||||||||||||
Sbjct: 59454 ggagtgtctaagggcatccatg 59475
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>ref|XM_552922.1| Anopheles gambiae str. PEST ENSANGP00000027726
           (ENSANGG00000023827), partial mRNA
          Length = 708

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 104 gcattctgcccaatgacgaaa 124
           |||||||||||||||||||||
Sbjct: 658 gcattctgcccaatgacgaaa 678
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>gb|AC121820.2| Mus musculus BAC clone RP23-460N4 from 6, complete sequence
          Length = 178653

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   cagatggaggcatcttctgt 386
             ||||||||||||||||||||
Sbjct: 24349 cagatggaggcatcttctgt 24368
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>gb|AY639544.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  ttattattcataaaattttg 66
           ||||||||||||||||||||
Sbjct: 292 ttattattcataaaattttg 273
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>gb|AY639543.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  ttattattcataaaattttg 66
           ||||||||||||||||||||
Sbjct: 292 ttattattcataaaattttg 273
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>gb|AY639542.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100501 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  ttattattcataaaattttg 66
           ||||||||||||||||||||
Sbjct: 292 ttattattcataaaattttg 273
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>emb|AJ884762.1| Gigaspora rosea dispersed repeat GrosRE3-T3, clone Gros10
          Length = 1550

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 46 cttattattcataaaatttt 65
          ||||||||||||||||||||
Sbjct: 23 cttattattcataaaatttt 42
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>emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chromosome 9 Contains the
             5' end of the RFX3 gene for regulatory factor X, 3
             (influences HLA class II expression), the 5' end of a
             novel gene and a CpG island, complete sequence
          Length = 177164

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    tttcccttattattcataaaattt 64
             |||| |||||||||||||||||||
Sbjct: 91554 tttcacttattattcataaaattt 91531
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>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains
             pseudogene similar to part of a novel gene (KIAA1688), a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 6 (SLC25A6) (ANT3)
             pseudogene and a CpG island, complete sequence
          Length = 169550

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 83    atgacaactgcacctacagttgca 106
             ||||||| ||||||||||||||||
Sbjct: 83532 atgacaaatgcacctacagttgca 83555
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>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence
          Length = 141449

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    agtttcccttattattcata 58
             ||||||||||||||||||||
Sbjct: 91276 agtttcccttattattcata 91295
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    tagggatcggtttccagatg 372
              ||||||||||||||||||||
Sbjct: 711308 tagggatcggtttccagatg 711327
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>gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, complete sequence
          Length = 159520

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   aagatggggagacagtgggc 315
             ||||||||||||||||||||
Sbjct: 63113 aagatggggagacagtgggc 63132
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>gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, complete sequence
          Length = 145042

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    agtttcccttattattcata 58
             ||||||||||||||||||||
Sbjct: 11654 agtttcccttattattcata 11635
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>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 53      ttcataaaattttgcaggattgat 76
               ||||||||||||||||||| ||||
Sbjct: 1103477 ttcataaaattttgcaggagtgat 1103454
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>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence
          Length = 140977

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    agtttcccttattattcata 58
             ||||||||||||||||||||
Sbjct: 49694 agtttcccttattattcata 49675
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>emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chromosome 2, complete
            sequence
          Length = 149273

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 400  acagagaagatgtgtagctc 419
            ||||||||||||||||||||
Sbjct: 5955 acagagaagatgtgtagctc 5974
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>dbj|AB029488.1| Homo sapiens C11orf21 mRNA, complete cds
          Length = 2967

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   agtttcccttattattcata 58
            ||||||||||||||||||||
Sbjct: 2786 agtttcccttattattcata 2805


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,610,429
Number of Sequences: 3902068
Number of extensions: 4610429
Number of successful extensions: 86655
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86499
Number of HSP's gapped (non-prelim): 149
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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