Clone Information

BLAST Search Result

Clone Name	rbags3l05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL662995.2\|OSJN00202 Oryza sativa genomic DNA, chromosome 4,...	123	4e-25
2	emb\|AL662955.3\|OSJN00158 Oryza sativa genomic DNA, chromosome 4,...	123	4e-25
3	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	4e-25
4	dbj\|AK072677.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	123	4e-25
5	gb\|AY110793.1\| Zea mays CL9336_1 mRNA sequence	76	8e-11
6	ref\|XM_471560.1\| Oryza sativa (japonica cultivar-group), predic...	72	1e-09
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	60	5e-06
8	dbj\|AP003771.2\| Oryza sativa (japonica cultivar-group) genomic D...	60	5e-06
9	dbj\|AK100512.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	60	5e-06
10	gb\|AC122439.4\| Mus musculus BAC clone RP24-222B4 from chromosome...	44	0.30
11	gb\|AC161454.3\| Mus musculus BAC clone RP23-332F10 from chromosom...	44	0.30
12	gb\|AC158233.2\| Mus musculus BAC clone RP23-240E15 from chromosom...	44	0.30
13	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.30
14	dbj\|AK100503.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.30
15	gb\|AE000657.1\| Aquifex aeolicus VF5, complete genome	44	0.30
16	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.30
17	emb\|AL731884.4\|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa...	44	0.30
18	emb\|AL928774.3\|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa...	44	0.30
19	gb\|AC157560.3\| Mus musculus chromosome 15, clone RP24-270I3, com...	42	1.2
20	gb\|AC114689.4\| Homo sapiens chromosome 18, clone RP11-638L3, com...	42	1.2
21	gb\|AC021561.8\| Homo sapiens chromosome 18, clone RP11-766D3, com...	42	1.2
22	gb\|AC019084.9\| Homo sapiens BAC clone RP11-354O2 from 7, complet...	42	1.2
23	dbj\|AB010072.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	1.2
24	gb\|AC161352.7\| Mus musculus chromosome 3, clone RP23-129N8, comp...	40	4.7
25	gb\|AC136901.17\| Mus musculus chromosome 3, clone RP24-510H14, co...	40	4.7
26	gb\|AE017346.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	4.7
27	gb\|AC150488.2\| Bos taurus BAC CH240-466B8 (Children's Hospital ...	40	4.7
28	gb\|BT011420.1\| Drosophila melanogaster AT07459 full insert cDNA	40	4.7
29	ref\|XM_571479.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	4.7
30	emb\|AL355595.10\| Human DNA sequence from clone RP11-276G3 on chr...	40	4.7
31	gb\|AY118680.1\| Drosophila melanogaster AT10348 full insert cDNA	40	4.7
32	ref\|NM_169941.1\| Drosophila melanogaster Na/Ca-exchange protein ...	40	4.7
33	ref\|NM_169940.1\| Drosophila melanogaster Na/Ca-exchange protein ...	40	4.7
34	ref\|NM_079699.2\| Drosophila melanogaster Na/Ca-exchange protein ...	40	4.7
35	gb\|AC154875.8\| Mus musculus chromosome 3, clone RP23-14O16, comp...	40	4.7
36	ref\|XM_624313.1\| PREDICTED: Apis mellifera similar to GA19045-PA...	40	4.7
37	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.7
38	dbj\|AB210446.1\| Ciona intestinalis mRNA for transcription factor...	40	4.7
39	gb\|AC009348.6\|AC009348 Drosophila melanogaster, chromosome 3R, r...	40	4.7
40	gb\|AC117497.3\| Homo sapiens 12 BAC RP11-422O21 (Roswell Park Can...	40	4.7
41	gb\|M74895.1\|SMFPOLORF Simian foamy virus type 3, gag polyprotein...	40	4.7
42	dbj\|AP004255.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.7
43	dbj\|AP004178.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.7
44	emb\|AM055942.1\| Toxoplasma gondii, strain RH, genomic DNA chromo...	40	4.7
45	gb\|AE003733.3\| Drosophila melanogaster chromosome 3R, section 71...	40	4.7
46	gb\|AF009897.1\|AF009897 Drosophila melanogaster 3Na(+)-1Ca(2+) ex...	40	4.7
47	emb\|AL117209.7\|CNS01DRH Human chromosome 14 DNA sequence BAC R-3...	40	4.7
48	gb\|L13448.1\|MUSGSTM101 Mouse glutathione transferase mu (GSTM1) ...	40	4.7
49	emb\|AL671877.15\| Mouse DNA sequence from clone RP23-214E3 on chr...	40	4.7

>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24,
            complete sequence
          Length = 132465

 Score =  123 bits (62), Expect = 4e-25
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                        
Query: 252  aggctgagcactactncttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 311
            ||||||||||||| | ||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 5381 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 5440

                                                 
Query: 312  ccctgctcttcctctcctccaggagcttgcttttggt 348
            ||||||||||||||||||| ||||| |||||||||||
Sbjct: 5441 ccctgctcttcctctcctcaaggagtttgcttttggt 5477

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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
              complete sequence
          Length = 185211

 Score =  123 bits (62), Expect = 4e-25
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                          
Query: 252    aggctgagcactactncttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 311
              ||||||||||||| | ||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 156239 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 156298

                                                   
Query: 312    ccctgctcttcctctcctccaggagcttgcttttggt 348
              ||||||||||||||||||| ||||| |||||||||||
Sbjct: 156299 ccctgctcttcctctcctcaaggagtttgcttttggt 156335

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  123 bits (62), Expect = 4e-25
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                            
Query: 252      aggctgagcactactncttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 311
                ||||||||||||| | ||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 12331355 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 12331414

                                                     
Query: 312      ccctgctcttcctctcctccaggagcttgcttttggt 348
                ||||||||||||||||||| ||||| |||||||||||
Sbjct: 12331415 ccctgctcttcctctcctcaaggagtttgcttttggt 12331451

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>dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136A15, full
            insert sequence
          Length = 1549

 Score =  123 bits (62), Expect = 4e-25
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                        
Query: 252  aggctgagcactactncttgaaggacatgaccgtctcgaaggcccctaccaaggccttca 311
            ||||||||||||| | ||||||||||||||| |||||||| || |||||||  |||||||
Sbjct: 1325 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 1266

                                                 
Query: 312  ccctgctcttcctctcctccaggagcttgcttttggt 348
            ||||||||||||||||||| ||||| |||||||||||
Sbjct: 1265 ccctgctcttcctctcctcaaggagtttgcttttggt 1229

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>gb|AY110793.1| Zea mays CL9336_1 mRNA sequence
          Length = 1098

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 299 accaaggccttcaccctgctcttcctctcctccaggagcttgcttttggt 348
           |||||||||||||||| |||||||||||||  ||||||||||||||||||
Sbjct: 263 accaaggccttcacccggctcttcctctccagcaggagcttgcttttggt 312

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>ref|XM_471560.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2922

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 305  gccttcaccctgctcttcctctcctccaggagcttgcttttggt 348
            |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 1379 gccttcaccctgctcttcctctcctcaaggagtttgcttttggt 1336

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 277      catgaccgtctcgaaggcccctaccaaggccttcaccctgctcttcctct 326
                ||||||||||||||| ||||| ||||  ||||||||| ||||||||||||
Sbjct: 28687689 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctct 28687640

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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0622F03
          Length = 170064

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 277   catgaccgtctcgaaggcccctaccaaggccttcaccctgctcttcctct 326
             ||||||||||||||| ||||| ||||  ||||||||| ||||||||||||
Sbjct: 88255 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctct 88206

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>dbj|AK100512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O06, full
            insert sequence
          Length = 2301

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 277  catgaccgtctcgaaggcccctaccaaggccttcaccctgctcttcctct 326
            ||||||||||||||| ||||| ||||  ||||||||| ||||||||||||
Sbjct: 1886 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctct 1837

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>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence
          Length = 159703

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 322   cctctcctccaggagcttgctt 343
             ||||||||||||||||||||||
Sbjct: 27876 cctctcctccaggagcttgctt 27897

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>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence
          Length = 228486

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 322   cctctcctccaggagcttgctt 343
             ||||||||||||||||||||||
Sbjct: 43495 cctctcctccaggagcttgctt 43516

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>gb|AC158233.2| Mus musculus BAC clone RP23-240E15 from chromosome 3, complete
           sequence
          Length = 209923

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 322 cctctcctccaggagcttgctt 343
           ||||||||||||||||||||||
Sbjct: 592 cctctcctccaggagcttgctt 571

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 284      gtctcgaaggcccctaccaaggccttcaccctgctcttcctc 325
                ||||||||||| || || | |||||||||| |||||||||||
Sbjct: 23962209 gtctcgaaggcgccgacgagggccttcaccttgctcttcctc 23962168

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>dbj|AK100503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099K02, full
            insert sequence
          Length = 2226

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 284  gtctcgaaggcccctaccaaggccttcaccctgctcttcctc 325
            ||||||||||| || || | |||||||||| |||||||||||
Sbjct: 2115 gtctcgaaggcgccgacgagggccttcaccttgctcttcctc 2074

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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 318     tcttcctctcctccaggagctt 339
               ||||||||||||||||||||||
Sbjct: 1120091 tcttcctctcctccaggagctt 1120070

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 284      gtctcgaaggcccctaccaaggccttcaccctgctcttcctc 325
                ||||||||||| || || | |||||||||| |||||||||||
Sbjct: 23890415 gtctcgaaggcgccgacgagggccttcaccttgctcttcctc 23890374

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>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144767

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 284   gtctcgaaggcccctaccaaggccttcaccctgctcttcctc 325
             ||||||||||| || || | |||||||||| |||||||||||
Sbjct: 10972 gtctcgaaggcgccgacgagggccttcaccttgctcttcctc 11013

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>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 176388

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 284    gtctcgaaggcccctaccaaggccttcaccctgctcttcctc 325
              ||||||||||| || || | |||||||||| |||||||||||
Sbjct: 125187 gtctcgaaggcgccgacgagggccttcaccttgctcttcctc 125228

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>gb|AC157560.3| Mus musculus chromosome 15, clone RP24-270I3, complete sequence
          Length = 157844

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   taccaaggccttcaccctgct 318
             |||||||||||||||||||||
Sbjct: 97347 taccaaggccttcaccctgct 97327

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>gb|AC114689.4| Homo sapiens chromosome 18, clone RP11-638L3, complete sequence
          Length = 177781

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 309    tcaccctgctcttcctctcct 329
              |||||||||||||||||||||
Sbjct: 115696 tcaccctgctcttcctctcct 115676

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>gb|AC021561.8| Homo sapiens chromosome 18, clone RP11-766D3, complete sequence
          Length = 174508

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   tcaccctgctcttcctctcct 329
             |||||||||||||||||||||
Sbjct: 87610 tcaccctgctcttcctctcct 87590

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>gb|AC019084.9| Homo sapiens BAC clone RP11-354O2 from 7, complete sequence
          Length = 201215

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   ctcttcctctcctccaggagc 337
             |||||||||||||||||||||
Sbjct: 23327 ctcttcctctcctccaggagc 23307

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>dbj|AB010072.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6
          Length = 83698

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   agtccgaaataaagaaaaaat 124
             |||||||||||||||||||||
Sbjct: 56808 agtccgaaataaagaaaaaat 56828

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>gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, complete sequence
          Length = 192165

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    cttcaccctgctcttcctct 326
              ||||||||||||||||||||
Sbjct: 134656 cttcaccctgctcttcctct 134637

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>gb|AC136901.17| Mus musculus chromosome 3, clone RP24-510H14, complete sequence
          Length = 129686

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   cttcaccctgctcttcctct 326
             ||||||||||||||||||||
Sbjct: 99805 cttcaccctgctcttcctct 99824

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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     caacagcaacaagcagcgca 82
              ||||||||||||||||||||
Sbjct: 134747 caacagcaacaagcagcgca 134728

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>gb|AC150488.2| Bos taurus  BAC CH240-466B8 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 135467

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tcaccctgctcttcctctcc 328
              ||||||||||||||||||||
Sbjct: 108420 tcaccctgctcttcctctcc 108439

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>gb|BT011420.1| Drosophila melanogaster AT07459 full insert cDNA
          Length = 3747

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cagcaacagcaacaagcagc 79
           ||||||||||||||||||||
Sbjct: 457 cagcaacagcaacaagcagc 476

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>ref|XM_571479.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNF00370) partial mRNA
          Length = 2912

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   caacagcaacaagcagcgca 82
            ||||||||||||||||||||
Sbjct: 1166 caacagcaacaagcagcgca 1185

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>emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chromosome 13 Contains a
              novel gene and a novel pseudogene, complete sequence
          Length = 119343

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 308    ttcaccctgctcttcctctcctcc 331
              |||||||| |||||||||||||||
Sbjct: 115611 ttcaccctcctcttcctctcctcc 115588

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>gb|AY118680.1| Drosophila melanogaster AT10348 full insert cDNA
          Length = 3743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cagcaacagcaacaagcagc 79
           ||||||||||||||||||||
Sbjct: 460 cagcaacagcaacaagcagc 479

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>ref|NM_169941.1| Drosophila melanogaster Na/Ca-exchange protein CG5685-RC,
           transcript variant C (Calx), mRNA
          Length = 4726

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cagcaacagcaacaagcagc 79
           ||||||||||||||||||||
Sbjct: 354 cagcaacagcaacaagcagc 373

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>ref|NM_169940.1| Drosophila melanogaster Na/Ca-exchange protein CG5685-RB,
           transcript variant B (Calx), mRNA
          Length = 4829

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cagcaacagcaacaagcagc 79
           ||||||||||||||||||||
Sbjct: 457 cagcaacagcaacaagcagc 476

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>ref|NM_079699.2| Drosophila melanogaster Na/Ca-exchange protein CG5685-RA, transcript
            variant A (Calx), mRNA
          Length = 5390

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   cagcaacagcaacaagcagc 79
            ||||||||||||||||||||
Sbjct: 1018 cagcaacagcaacaagcagc 1037

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>gb|AC154875.8| Mus musculus chromosome 3, clone RP23-14O16, complete sequence
          Length = 225841

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    cctaccaaggccttcaccct 315
              ||||||||||||||||||||
Sbjct: 106354 cctaccaaggccttcaccct 106335

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>ref|XM_624313.1| PREDICTED: Apis mellifera similar to GA19045-PA (LOC551928), mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   caacagcaacaagcagcgca 82
            ||||||||||||||||||||
Sbjct: 991  caacagcaacaagcagcgca 1010

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 206      cagtacaggatgcacccagg 225
                ||||||||||||||||||||
Sbjct: 27989889 cagtacaggatgcacccagg 27989870

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>dbj|AB210446.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: cilv047l24
          Length = 3256

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  cagcaacagcaacaagcagc 79
           ||||||||||||||||||||
Sbjct: 813 cagcaacagcaacaagcagc 832

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>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
             BACR05I01, complete sequence
          Length = 187151

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    cagcaacagcaacaagcagc 79
             ||||||||||||||||||||
Sbjct: 90375 cagcaacagcaacaagcagc 90394

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>gb|AC117497.3| Homo sapiens 12 BAC RP11-422O21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 87243

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   atggaatacaaatggaccaa 150
             ||||||||||||||||||||
Sbjct: 73406 atggaatacaaatggaccaa 73425

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>gb|M74895.1|SMFPOLORF Simian foamy virus type 3, gag polyprotein 3' end, pol polyprotein 3'
            end, env protein 3' end, orf1 3' end, orf2 partial cds,
            and orf3 3' end
          Length = 13111

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   accagcaacagcaacaagca 77
            ||||||||||||||||||||
Sbjct: 3467 accagcaacagcaacaagca 3486

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>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_A08
          Length = 119304

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   cagtacaggatgcacccagg 225
             ||||||||||||||||||||
Sbjct: 33551 cagtacaggatgcacccagg 33532

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>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1123_G04
          Length = 124666

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    cagtacaggatgcacccagg 225
              ||||||||||||||||||||
Sbjct: 117341 cagtacaggatgcacccagg 117322

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>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 303    aggccttcaccctgctcttcctct 326
              ||||||||||||||| ||||||||
Sbjct: 678509 aggccttcaccctgcgcttcctct 678532

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>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the
             complete sequence
          Length = 235707

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    cagcaacagcaacaagcagc 79
             ||||||||||||||||||||
Sbjct: 14238 cagcaacagcaacaagcagc 14257

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>gb|AF009897.1|AF009897 Drosophila melanogaster 3Na(+)-1Ca(2+) exchanger (Calx) mRNA,
            complete cds
          Length = 5408

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   cagcaacagcaacaagcagc 79
            ||||||||||||||||||||
Sbjct: 1022 cagcaacagcaacaagcagc 1041

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>emb|AL117209.7|CNS01DRH Human chromosome 14 DNA sequence BAC R-365N19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 159602

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 321    tcctctcctccaggagcttgcttt 344
              |||||||| |||||||||||||||
Sbjct: 101393 tcctctcccccaggagcttgcttt 101370

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>gb|L13448.1|MUSGSTM101 Mouse glutathione transferase mu (GSTM1) gene, exons 1-5
          Length = 2408

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  aatacaaatggaccaaggaa 154
            ||||||||||||||||||||
Sbjct: 1256 aatacaaatggaccaaggaa 1237

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>emb|AL671877.15| Mouse DNA sequence from clone RP23-214E3 on chromosome 3, complete
              sequence
          Length = 146015

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    aatacaaatggaccaaggaa 154
              ||||||||||||||||||||
Sbjct: 104547 aatacaaatggaccaaggaa 104566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,403,484
Number of Sequences: 3902068
Number of extensions: 3403484
Number of successful extensions: 89520
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89326
Number of HSP's gapped (non-prelim): 194
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result