ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3l03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative F-box protein family (OSJNAa0011L09.13), mRNA Length = 3459 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 2757 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 2698 Query: 356 ttcatcctcttgcaacattgtgcatgcct 384 ||| || ||||||||||| |||||||||| Sbjct: 2697 ttcctcatcttgcaacatggtgcatgcct 2669
>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0011L09, complete sequence Length = 121055 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 76107 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 76166 Query: 356 ttcatcctcttgcaacattgtgcatgcct 384 ||| || ||||||||||| |||||||||| Sbjct: 76167 ttcctcatcttgcaacatggtgcatgcct 76195
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 141181 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 141122 Query: 356 ttcatcctcttgcaacattgtgcatgcct 384 ||| || ||||||||||| |||||||||| Sbjct: 141121 ttcctcatcttgcaacatggtgcatgcct 141093
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 12779668 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12779727 Query: 356 ttcatcctcttgcaacattgtgcatgcct 384 ||| || ||||||||||| |||||||||| Sbjct: 12779728 ttcctcatcttgcaacatggtgcatgcct 12779756
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 12787009 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12787068 Query: 356 ttcatcctcttgcaacattgtgcatgcct 384 ||| || ||||||||||| |||||||||| Sbjct: 12787069 ttcctcatcttgcaacatggtgcatgcct 12787097
>dbj|AK072011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102A05, full insert sequence Length = 1911 Score = 79.8 bits (40), Expect = 9e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 1442 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1383 Query: 356 ttcatcctcttgcaacattgtgcatgcc 383 ||| || ||||||||||| ||||||||| Sbjct: 1382 ttcctcatcttgcaacatggtgcatgcc 1355
>gb|BT018755.1| Zea mays clone EL01N0523E09.d mRNA sequence Length = 2199 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||| |||||||| |||| |||||| |||| |||| ||||| |||||||| | Sbjct: 1755 tggacaagaatgcacattaaggacctccaacgcacaacaaagggatattgcagattctaa 1696 Query: 356 ttcatcctcttgcaacattgtgcatgcc 383 ||| |||||||||||||| ||||||||| Sbjct: 1695 ttcctcctcttgcaacatggtgcatgcc 1668
>dbj|AK070796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067J12, full insert sequence Length = 2385 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 1884 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1825 Query: 356 ttcatcctcttgcaacattgtgcatgcc 383 ||| || ||| ||||||| ||||||||| Sbjct: 1824 ttcctcatctcgcaacatggtgcatgcc 1797
>gb|BT018349.1| Zea mays clone EL01T0403E10.c mRNA sequence Length = 1020 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 296 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 355 ||||||||| |||||||| |||| |||||| |||| |||| ||||| |||||||| | Sbjct: 400 tggacaagaatgcacattaaggaactccaacgcactacaaagggatattgcagattctaa 341 Query: 356 ttcatcctcttgcaacattgtgcatgcc 383 ||| |||||||||||||| |||||||| Sbjct: 340 ttcctcctcttgcaacatgatgcatgcc 313 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 216 tatgcgatgaggctgctctgaatgcgcttgagagttgggcaa 257 |||| ||||||||||||||| |||||||| ||| | |||||| Sbjct: 480 tatgagatgaggctgctctggatgcgcttcagactggggcaa 439
>emb|AL021812.1|HSU86H4 Human DNA sequence from clone LL0XNC01-86H4 on chromosome X, complete sequence Length = 45199 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 402 agaataaagtatatgtgataat 423 |||||||||||||||||||||| Sbjct: 40567 agaataaagtatatgtgataat 40588
>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence Length = 191823 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 acaagaaatcaattggaaaaa 114 ||||||||||||||||||||| Sbjct: 163256 acaagaaatcaattggaaaaa 163236
>gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete sequence Length = 135883 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 acaagaaatcaattggaaaaa 114 ||||||||||||||||||||| Sbjct: 117289 acaagaaatcaattggaaaaa 117309
>emb|AL773543.3| Human DNA sequence from clone DAQB-187P15 on chromosome 6 Contains the MTCO3P1 pseudogene for cytochrome c oxidase III, the HLA-DQB3 pseudogene for major histocompatibility complex, class II, DQ beta 3, the HLA-DQA2 gene for major histocompatibility complex, class II, DQ alpha 2, the HLA-DQB2 gene for major histocompatibility complex, class II, DQ beta 2 and one CpG island, complete sequence Length = 117303 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 tggcttttttgtttcaaatct 191 ||||||||||||||||||||| Sbjct: 66812 tggcttttttgtttcaaatct 66832
>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence Length = 126875 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 tcacatgtttagcctatctga 463 ||||||||||||||||||||| Sbjct: 98964 tcacatgtttagcctatctga 98944
>emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on chromosome 6, complete sequence Length = 109326 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 tggcttttttgtttcaaatct 191 ||||||||||||||||||||| Sbjct: 106780 tggcttttttgtttcaaatct 106800
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 aatggcttttttgtttcaaa 188 |||||||||||||||||||| Sbjct: 1131070 aatggcttttttgtttcaaa 1131051
>gb|AC137961.5| Mus musculus chromosome 14, clone RP24-550E9, complete sequence Length = 137397 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 ataagagtcatattggaaga 404 |||||||||||||||||||| Sbjct: 36692 ataagagtcatattggaaga 36673
>gb|AC108318.8| Rattus norvegicus 2 BAC CH230-256E18 (Children's Hospital Oakland Research Institute) complete sequence Length = 210322 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 tttacaaatttgaagtattt 562 |||||||||||||||||||| Sbjct: 5669 tttacaaatttgaagtattt 5650
>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete sequence Length = 205177 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 atttcagttcatcctcttgc 368 |||||||||||||||||||| Sbjct: 133427 atttcagttcatcctcttgc 133446
>gb|AC142473.2| Mus musculus BAC clone RP24-448M19 from chromosome Y, complete sequence Length = 143928 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 aagaataaagtatatgtgat 420 |||||||||||||||||||| Sbjct: 91784 aagaataaagtatatgtgat 91765
>ref|XM_803203.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510397.10) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gacaatggcttttttgtttc 185 |||||||||||||||||||| Sbjct: 304 gacaatggcttttttgtttc 323
>ref|XM_809478.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510609.20) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gacaatggcttttttgtttc 185 |||||||||||||||||||| Sbjct: 304 gacaatggcttttttgtttc 323
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 398 tggaagaataaagtatatgtgata 421 ||||||||||||||| |||||||| Sbjct: 181297 tggaagaataaagtaaatgtgata 181274
>gb|AC099413.3| Mus musculus BAC clone RP23-2O10 from 4, complete sequence Length = 208798 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 tttatttgtggacaagagtg 307 |||||||||||||||||||| Sbjct: 207754 tttatttgtggacaagagtg 207735
>ref|XM_646012.1| Entamoeba histolytica HM-1:IMSS RIO1 family protein (183.t00019) partial mRNA Length = 1425 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tggaagaataaagtatatgt 417 |||||||||||||||||||| Sbjct: 592 tggaagaataaagtatatgt 611
>ref|XM_651969.1| Entamoeba histolytica HM-1:IMSS RIO1 family protein (5.t00018) partial mRNA Length = 1425 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tggaagaataaagtatatgt 417 |||||||||||||||||||| Sbjct: 592 tggaagaataaagtatatgt 611
>ref|XM_651981.1| Entamoeba histolytica HM-1:IMSS RIO1 family protein (5.t00008) partial mRNA Length = 792 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tggaagaataaagtatatgt 417 |||||||||||||||||||| Sbjct: 274 tggaagaataaagtatatgt 293
>gb|AC098742.4| Mus musculus BAC clone RP23-122N2 from 14, complete sequence Length = 218683 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 ataagagtcatattggaaga 404 |||||||||||||||||||| Sbjct: 57351 ataagagtcatattggaaga 57370
>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four novel genes, a novel pseudogene, the 5' end of the CROCC gene for ciliary rootlet coiled-coil rootletin (KIAA0445) and two CpG islands, complete sequence Length = 93826 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 attcagcacaagaaatcaat 106 |||||||||||||||||||| Sbjct: 15037 attcagcacaagaaatcaat 15018
>emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on chromosome 13q14.2-21.2 Contains a novel gene, complete sequence Length = 153859 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 398 tggaagaataaagtatatgtgata 421 ||||||||||||||| |||||||| Sbjct: 60859 tggaagaataaagtaaatgtgata 60836
>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21 Contains a novel pseudogene, a eukaryotic translation initiation factor 1A pseudogene 1 (EIF1AP1), part of a novel gene (LOC284729), a macrophage stimulating 1 (hepatocyte growth factor-like)(MST1) pseudogene and five CpG islands, complete sequence Length = 118067 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 attcagcacaagaaatcaat 106 |||||||||||||||||||| Sbjct: 48460 attcagcacaagaaatcaat 48441
>ref|XM_962488.1| PREDICTED: Tribolium castaneum similar to CG3424-PA, isoform A (LOC655932), mRNA Length = 1443 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 caaatttgaagtatttggca 566 |||||||||||||||||||| Sbjct: 668 caaatttgaagtatttggca 687
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 aatggcttttttgtttcaaa 188 |||||||||||||||||||| Sbjct: 2691148 aatggcttttttgtttcaaa 2691167
>emb|AL645913.12| Mouse DNA sequence from clone RP23-194G14 on chromosome 11 Contains the 3' end of gene 9130006A14Rik, the 5' end of the Rnf130 gene for ring finger protein 130 and a CpG island, complete sequence Length = 131007 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 catataaataggtttgttta 511 |||||||||||||||||||| Sbjct: 27662 catataaataggtttgttta 27643
>gb|AC104849.2| Homo sapiens chromosome 3 clone RP11-154D3, complete sequence Length = 165849 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ttttttgtttcaaatctgga 194 |||||||||||||||||||| Sbjct: 103467 ttttttgtttcaaatctgga 103448
>gb|AF480912.1| Legionella pneumophila clone pA37F putative lipoprotein (plpA), putative copper efflux ATPase (copA2), chemiosmotic efflux system C protein A (cecA), chemiosmotic efflux system C protein B (cecB), chemiosmotic efflux system C protein C (cecC), putative copper efflux ATPase (copA1), chemiosmotic efflux system B protein A (cebA), chemiosmotic efflux system B protein B (cebB), chemiosmotic efflux system B protein C (cebC), putative cation efflux transporter (ctpA), putative cadmium efflux ATPase (cadA1), and cadA2 genes, complete cds; and unknown genes Length = 38800 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 aatggcttttttgtttcaaa 188 |||||||||||||||||||| Sbjct: 8184 aatggcttttttgtttcaaa 8203
>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174551 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 agaaatcaattggaaaaaca 116 |||||||||||||||||||| Sbjct: 73633 agaaatcaattggaaaaaca 73652
>gb|AC105939.2| Homo sapiens chromosome 3 clone RP11-241A5, complete sequence Length = 97387 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ttttttgtttcaaatctgga 194 |||||||||||||||||||| Sbjct: 15709 ttttttgtttcaaatctgga 15690
>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold Length = 489372 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 aatggcttttttgtttcaaa 188 |||||||||||||||||||| Sbjct: 25788 aatggcttttttgtttcaaa 25807
>dbj|AK145723.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0033L07 product:transportin 3, full insert sequence Length = 2616 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 atttcagttcatcctcttgc 368 |||||||||||||||||||| Sbjct: 2440 atttcagttcatcctcttgc 2421
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 atctgatacaattatcaata 477 |||||||||||||||||||| Sbjct: 311718 atctgatacaattatcaata 311699
>gb|AY036106.1| Chlamydomonas reinhardtii hydroxyproline-rich glycoprotein VSP4 mRNA, complete cds Length = 4029 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gcctgtagcccgccaaaatccagc 284 ||||| |||||||||||||||||| Sbjct: 1478 gcctgcagcccgccaaaatccagc 1501
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aagaaatcaattggaaaaac 115 |||||||||||||||||||| Sbjct: 10429419 aagaaatcaattggaaaaac 10429400
>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1104_G11 Length = 140093 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aagaaatcaattggaaaaac 115 |||||||||||||||||||| Sbjct: 137124 aagaaatcaattggaaaaac 137105
>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0448B03 Length = 147748 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 aagaaatcaattggaaaaac 115 |||||||||||||||||||| Sbjct: 29798 aagaaatcaattggaaaaac 29779
>emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-724F15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192387 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gtttccatatttcaactaga 87 |||||||||||||||||||| Sbjct: 82040 gtttccatatttcaactaga 82059
>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete sequence Length = 264966 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 agaaatcaattggaaaaaca 116 |||||||||||||||||||| Sbjct: 22213 agaaatcaattggaaaaaca 22232
>gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s DS01986 (D261), DS01814 (D252), and DS08881 (D260)), complete sequence Length = 196672 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 agaaatcaattggaaaaaca 116 |||||||||||||||||||| Sbjct: 166919 agaaatcaattggaaaaaca 166900
>gb|U84749.1|DMU84749 Drosophila melanogaster cuticle protein LCP65Aa gene, complete cds Length = 1585 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 agaaatcaattggaaaaaca 116 |||||||||||||||||||| Sbjct: 1199 agaaatcaattggaaaaaca 1218
>emb|AL772320.12| Mouse DNA sequence from clone RP23-346F2 on chromosome 4, complete sequence Length = 211321 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 tttatttgtggacaagagtg 307 |||||||||||||||||||| Sbjct: 81599 tttatttgtggacaagagtg 81618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,295,471 Number of Sequences: 3902068 Number of extensions: 5295471 Number of successful extensions: 108091 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107836 Number of HSP's gapped (non-prelim): 249 length of query: 574 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 551 effective length of database: 17,143,297,704 effective search space: 9445957034904 effective search space used: 9445957034904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
