ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3l01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482576.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
5ref|XM_421378.1| PREDICTED: Gallus gallus similar to TNF recepto... 42 2.0
6gb|AC142308.3| Pan troglodytes BAC clone RP43-135J9 from Y, comp... 42 2.0
7dbj|BS000594.1| Pan troglodytes chromosome Y clone:PTB-031N07, c... 42 2.0
8gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 2.0
9emb|BX932940.2| Gallus gallus finished cDNA, clone ChEST36n15 42 2.0
10ref|NM_201168.1| Danio rerio zgc:56184 (zgc:56184), mRNA 40 8.1
11ref|XM_425700.1| PREDICTED: Gallus gallus similar to RIM4 gamma ... 40 8.1
12gb|BC047839.1| Danio rerio zgc:56184, mRNA (cDNA clone MGC:56184... 40 8.1
13emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chr... 40 8.1
14gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8... 40 8.1
15gb|AC092894.6| Homo sapiens 3 BAC RP11-231E6 (Roswell Park Cance... 40 8.1
16gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 8.1
17gb|AC092404.2| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 8.1
18gb|AC124040.3| Oryctolagus cuniculus clone LB1-18E1, complete se... 40 8.1
19gb|AC133552.3| Homo sapiens chromosome 16 clone RP11-266L9, comp... 40 8.1
20gb|AC083809.21| Homo sapiens 12 BAC RP11-785D18 (Roswell Park Ca... 40 8.1
21emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in... 40 8.1
22emb|BX005203.7| Zebrafish DNA sequence from clone DKEY-110C1 in ... 40 8.1
23dbj|AP001282.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.1
24gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromoso... 40 8.1 
>ref|XM_482576.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                        
Query: 431  tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 490
            |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 1697 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 1638

                                                                       
Query: 491  ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 549
            |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 1637 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 1586
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                            
Query: 431      tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 490
                |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 21186700 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 21186641

                                                                           
Query: 491      ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 549
                |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 21186640 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 21186589
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>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016C11
          Length = 170723

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                         
Query: 431   tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 490
             |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 12977 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 12918

                                                                        
Query: 491   ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 549
             |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 12917 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 12866
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>dbj|AK065062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J16, full
            insert sequence
          Length = 2052

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 97/119 (81%), Gaps = 7/119 (5%)
 Strand = Plus / Minus

                                                                        
Query: 431  tcccagcgaccaggcgcaaggctcatcggttgacccttgttatcatgtgccggcctctct 490
            |||||||||| | |||||||||||||||  | ||||| ||||| |||| ||||||| |||
Sbjct: 1697 tcccagcgacgacgcgcaaggctcatcgtctcaccctggttatgatgtaccggcctttct 1638

                                                                       
Query: 491  ccaatctccatgtcctatactgtcttgaggcaagatcttctccacttcaggatggagca 549
            |||       |||| ||||| ||||| |||| ||||||||||| | |||||||||||||
Sbjct: 1637 cca-------tgtcgtataccgtcttcaggcgagatcttctccccctcaggatggagca 1586
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>ref|XM_421378.1| PREDICTED: Gallus gallus similar to TNF receptor associated factor 3
            (CD40 receptor associated factor 1) (CRAF1) (CD40 binding
            protein) (CD40BP) (LMP1 associated protein) (LAP1)
            (CAP-1) (LOC423471), mRNA
          Length = 2004

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 231  cagctcagcagtgcagcatgt 251
            |||||||||||||||||||||
Sbjct: 1056 cagctcagcagtgcagcatgt 1076
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>gb|AC142308.3| Pan troglodytes BAC clone RP43-135J9 from Y, complete sequence
          Length = 148521

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    ataattttgtacgcctgtctt 106
             |||||||||||||||||||||
Sbjct: 76233 ataattttgtacgcctgtctt 76253
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>dbj|BS000594.1| Pan troglodytes chromosome Y clone:PTB-031N07, complete sequences
          Length = 88699

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    ataattttgtacgcctgtctt 106
             |||||||||||||||||||||
Sbjct: 66362 ataattttgtacgcctgtctt 66342
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 86       ataattttgtacgcctgtctt 106
                |||||||||||||||||||||
Sbjct: 15627672 ataattttgtacgcctgtctt 15627692
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>emb|BX932940.2| Gallus gallus finished cDNA, clone ChEST36n15
          Length = 1397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 231 cagctcagcagtgcagcatgt 251
           |||||||||||||||||||||
Sbjct: 557 cagctcagcagtgcagcatgt 577
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>ref|NM_201168.1| Danio rerio zgc:56184 (zgc:56184), mRNA
          Length = 1705

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   atccttccgtgaaggataat 90
            ||||||||||||||||||||
Sbjct: 1479 atccttccgtgaaggataat 1498
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>ref|XM_425700.1| PREDICTED: Gallus gallus similar to RIM4 gamma (LOC428142), mRNA
          Length = 2487

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  ttcagctcagcagtgcagca 248
            ||||||||||||||||||||
Sbjct: 1127 ttcagctcagcagtgcagca 1108
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>gb|BC047839.1| Danio rerio zgc:56184, mRNA (cDNA clone MGC:56184 IMAGE:5413461),
            complete cds
          Length = 1705

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   atccttccgtgaaggataat 90
            ||||||||||||||||||||
Sbjct: 1479 atccttccgtgaaggataat 1498
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>emb|CR956635.11| Pig DNA sequence from clone CH242-184L20 on chromosome 17, complete
             sequence
          Length = 211741

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   actgcagcagcccaagtcactgat 212
             |||||||||||||||||| |||||
Sbjct: 52829 actgcagcagcccaagtcgctgat 52806
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>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete
             sequence
          Length = 249943

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    acatgatataaacatgaaaa 64
             ||||||||||||||||||||
Sbjct: 69166 acatgatataaacatgaaaa 69185
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>gb|AC092894.6| Homo sapiens 3 BAC RP11-231E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127852

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    aaacatgaaaaactgtcatc 73
             ||||||||||||||||||||
Sbjct: 63473 aaacatgaaaaactgtcatc 63492
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    actgcagcagcccaagtcactgat 212
              |||||||||||||||| |||||||
Sbjct: 706148 actgcagcagcccaagccactgat 706125
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>gb|AC092404.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-261D18, complete
              sequence
          Length = 225503

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    agagtattgagcaactatgc 180
              ||||||||||||||||||||
Sbjct: 214493 agagtattgagcaactatgc 214474
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>gb|AC124040.3| Oryctolagus cuniculus clone LB1-18E1, complete sequence
          Length = 206755

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    actgcagcagcccaagtcactgat 212
              |||||||||||||||| |||||||
Sbjct: 169332 actgcagcagcccaagccactgat 169309
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>gb|AC133552.3| Homo sapiens chromosome 16 clone RP11-266L9, complete sequence
          Length = 159512

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   gcccaagtcactgattttac 217
             ||||||||||||||||||||
Sbjct: 70600 gcccaagtcactgattttac 70581
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>gb|AC083809.21| Homo sapiens 12 BAC RP11-785D18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 136607

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   ggccaggaatatctacatat 399
             ||||||||||||||||||||
Sbjct: 54575 ggccaggaatatctacatat 54594
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>emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in linkage group 22,
              complete sequence
          Length = 189327

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     aaacatgaaaaactgtcatc 73
              ||||||||||||||||||||
Sbjct: 176540 aaacatgaaaaactgtcatc 176521
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>emb|BX005203.7| Zebrafish DNA sequence from clone DKEY-110C1 in linkage group 22,
              complete sequence
          Length = 214843

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     aaacatgaaaaactgtcatc 73
              ||||||||||||||||||||
Sbjct: 174861 aaacatgaaaaactgtcatc 174880
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>dbj|AP001282.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-819M15, complete
             sequence
          Length = 165258

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   gcacaatgtaaatatgacaa 566
             ||||||||||||||||||||
Sbjct: 52229 gcacaatgtaaatatgacaa 52248
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>gb|AC145933.3| Gallus gallus BAC clone CH261-41E11 from chromosome unknown, complete
              sequence
          Length = 209915

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    cggtcttgttcagctcagca 240
              ||||||||||||||||||||
Sbjct: 207889 cggtcttgttcagctcagca 207908


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,296,748
Number of Sequences: 3902068
Number of extensions: 4296748
Number of successful extensions: 75342
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75253
Number of HSP's gapped (non-prelim): 89
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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