ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3k24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRC1A_CHICK (Q5ZM13) Down-regulated by CTNNB1 protein A 31 2.2
2FBN2_MOUSE (Q61555) Fibrillin-2 precursor 30 6.3
3R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 29 8.2
4FBN2_HUMAN (P35556) Fibrillin-2 precursor 29 8.2

>DRC1A_CHICK (Q5ZM13) Down-regulated by CTNNB1 protein A|
          Length = 515

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 265 CRGHLARMQTQRGFL*HMPKLVFLRRRRFATSGSVYEPG 149
           CR HL+R QTQR    ++ +L+ L+R    TS S+ +PG
Sbjct: 398 CREHLSRKQTQRALSENL-ELLSLKRLTLTTSQSLPKPG 435



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>FBN2_MOUSE (Q61555) Fibrillin-2 precursor|
          Length = 2907

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -3

Query: 222 SNICPSWSFFGGGGLQQVEVCMNQASMGSFCSSCRLVYVCSVRSVLLNCCKMHVFVCAXF 43
           S  CP W    GG    V +C N    G FCS   +   CS   +   C +  +  C+  
Sbjct: 95  SYCCPGWKTLPGGNQCIVPICRNSCGDG-FCSRPNMC-TCSSGQISPTCGRKSIQQCSV- 151

Query: 42  GSKCM 28
             +CM
Sbjct: 152 --RCM 154



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>R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like
            proteinase (EC 3.4
          Length = 6758

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 15   SHXXTYISIQXRHKRTHAFCNSSGEQ-IEHYIHTLIYSCCRRNPSKPGSYTLPLVANLLL 191
            SH  TY+S+  R K +       G   +  Y H + Y   R + S PGS++L    +  +
Sbjct: 5613 SHATTYLSLSDRFKTSGDLAVQIGNNNVCTYEHVISYMGFRFDVSMPGSHSLFCTRDFAM 5672

Query: 192  R 194
            R
Sbjct: 5673 R 5673



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>FBN2_HUMAN (P35556) Fibrillin-2 precursor|
          Length = 2911

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = -3

Query: 222 SNICPSWSFFGGGGLQQVEVCMNQASMGSFCSSCRLVYVCSVRSVLLNCCKMHVFVCAXF 43
           S  CP W    GG    V +C N    G FCS   +   CS   +   C    +  C+  
Sbjct: 95  SYCCPGWKTLPGGNQCIVPICRNSCGDG-FCSRPNMC-TCSSGQISSTCGSKSIQQCSV- 151

Query: 42  GSKCM 28
             +CM
Sbjct: 152 --RCM 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,034,368
Number of Sequences: 219361
Number of extensions: 1795798
Number of successful extensions: 4257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4257
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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