ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_506873.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 1e-07
2ref|XM_466836.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-07
3gb|AY224510.1| Oryza sativa (japonica cultivar-group) isolate 23... 62 1e-07
4dbj|AK101791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-07
5dbj|AK059771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-07
6dbj|AK059188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-07
7dbj|AB050624.1| Oryza sativa OsAK mRNA for adenosine kinase, com... 62 1e-07
8emb|AJ012281.1|ZMA012281 Zea mays mRNA for adenosine kinase, put... 46 0.008
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.008
10dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.008
11gb|AY103880.1| Zea mays PCO064637 mRNA sequence 46 0.008
12gb|AY695055.1| Nicotiana tabacum adenosine kinase isoform 2T mRN... 42 0.13
13gb|AY695054.1| Nicotiana tabacum adenosine kinase isoform 2T mRN... 42 0.13
14gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complet... 38 2.0
15emb|AL645760.15| Mouse DNA sequence from clone DN-262D11 on chro... 38 2.0
16gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, com... 38 2.0
17emb|AL606744.30| Mouse DNA sequence from clone RP23-267O21 on ch... 38 2.0
18gb|AE008401.1|AE008401 Streptococcus pneumoniae R6 section 17 of... 38 2.0
19gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 38 2.0
20gb|AC115749.12| Mus musculus chromosome 3, clone RP23-14C17, com... 36 7.7
21gb|AC121904.2| Mus musculus BAC clone RP24-175O7 from 7, complet... 36 7.7
22emb|AL353643.10| Human DNA sequence from clone RP11-359J23 on ch... 36 7.7
23emb|AL139383.14| Human DNA sequence from clone RP11-87G1 on chro... 36 7.7
24emb|AJ719375.1| Gallus gallus mRNA for hypothetical protein, clo... 36 7.7
25ref|NM_001006501.1| Gallus gallus adenosine kinase (ADK), mRNA 36 7.7
26gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, comp... 36 7.7
27gb|AC157988.5| Mus musculus chromosome 3, clone RP23-149E4, comp... 36 7.7
28gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complet... 36 7.7
29dbj|AP005353.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 36 7.7

>ref|XM_506873.1| PREDICTED Oryza sativa (japonica cultivar-group), B1215B07.34 mRNA
          Length = 1334

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 3    ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
            ||||||||| || |||||||||||| ||||||| || |||||||||||||
Sbjct: 1032 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 983



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>ref|XM_466836.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1334

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 3    ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
            ||||||||| || |||||||||||| ||||||| || |||||||||||||
Sbjct: 1032 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 983



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>gb|AY224510.1| Oryza sativa (japonica cultivar-group) isolate 23502 adenosine
            kinase-like protein mRNA, partial cds
          Length = 1113

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 3    ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
            ||||||||| || |||||||||||| ||||||| || |||||||||||||
Sbjct: 1011 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 962



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>dbj|AK101791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065J11, full
            insert sequence
          Length = 1334

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 3    ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
            ||||||||| || |||||||||||| ||||||| || |||||||||||||
Sbjct: 1032 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 983



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>dbj|AK059771.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H06, full
            insert sequence
          Length = 1335

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 3    ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
            ||||||||| || |||||||||||| ||||||| || |||||||||||||
Sbjct: 1033 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 984



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>dbj|AK059188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G12, full
           insert sequence
          Length = 1158

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 3   ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
           ||||||||| || |||||||||||| ||||||| || |||||||||||||
Sbjct: 877 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 828



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>dbj|AB050624.1| Oryza sativa OsAK mRNA for adenosine kinase, complete cds
          Length = 1332

 Score = 61.9 bits (31), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 3    ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
            ||||||||| || |||||||||||| ||||||| || |||||||||||||
Sbjct: 1028 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 979



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>emb|AJ012281.1|ZMA012281 Zea mays mRNA for adenosine kinase, putative
          Length = 1260

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 5   gaaccaactgagagaggaagcctacaacaaacgcntcaccagcgcc 50
           |||||||||| |||||||||||| |||| || || ||||| |||||
Sbjct: 893 gaaccaactgtgagaggaagcctccaacgaaagcatcacctgcgcc 848



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 3        ttgaaccaactgagagaggaagcctacaacaaacgcntcacc 44
                ||||||||| || |||||||||||| ||||||| || |||||
Sbjct: 24959644 ttgaaccaattgtgagaggaagcctccaacaaaggcatcacc 24959685



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>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1215B07
          Length = 165957

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 3      ttgaaccaactgagagaggaagcctacaacaaacgcntcacc 44
              ||||||||| || |||||||||||| ||||||| || |||||
Sbjct: 120927 ttgaaccaattgtgagaggaagcctccaacaaaggcatcacc 120968



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>gb|AY103880.1| Zea mays PCO064637 mRNA sequence
          Length = 1560

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 5    gaaccaactgagagaggaagcctacaacaaacgcntcaccagcgcc 50
            |||||||||| |||||||||||| |||| || || ||||| |||||
Sbjct: 1032 gaaccaactgtgagaggaagcctccaacgaaagcatcacctgcgcc 987



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>gb|AY695055.1| Nicotiana tabacum adenosine kinase isoform 2T mRNA, complete cds
          Length = 1306

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 1   ccttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
           ||||| |||||||| |  ||||| ||| ||||||| || |||||||||||||
Sbjct: 972 ccttggaccaactgtgcaaggaatcctccaacaaatgcatcaccagcgccat 921



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>gb|AY695054.1| Nicotiana tabacum adenosine kinase isoform 2T mRNA, complete cds
          Length = 1259

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                               
Query: 1   ccttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52
           ||||| |||||||| |  ||||| ||| ||||||| || |||||||||||||
Sbjct: 972 ccttggaccaactgtgcaaggaatcctccaacaaatgcatcaccagcgccat 921



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>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence
          Length = 98713

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     aaccaactgagagaggaag 24
             |||||||||||||||||||
Sbjct: 36023 aaccaactgagagaggaag 36005



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>emb|AL645760.15| Mouse DNA sequence from clone DN-262D11 on chromosome 3 Contains the 5'
             end of the Man1b gene for mannosidase 1 beta, a pseudogene
             similar to arylsulfatase A (Arsa) and a CpG island,
             complete sequence
          Length = 135825

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    tgagagaggaagcctacaa 31
             |||||||||||||||||||
Sbjct: 93733 tgagagaggaagcctacaa 93751



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>gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, complete sequence
          Length = 121054

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     accaactgagagaggaagc 25
             |||||||||||||||||||
Sbjct: 54570 accaactgagagaggaagc 54552



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>emb|AL606744.30| Mouse DNA sequence from clone RP23-267O21 on chromosome 3, complete
             sequence
          Length = 185867

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    tgagagaggaagcctacaa 31
             |||||||||||||||||||
Sbjct: 62891 tgagagaggaagcctacaa 62909



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>gb|AE008401.1|AE008401 Streptococcus pneumoniae R6 section 17 of 184 of the complete genome
          Length = 10952

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    ttgaaccaactgagagagg 21
            |||||||||||||||||||
Sbjct: 5554 ttgaaccaactgagagagg 5572



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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      ttgaaccaactgagagagg 21
              |||||||||||||||||||
Sbjct: 190672 ttgaaccaactgagagagg 190690



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>gb|AC115749.12| Mus musculus chromosome 3, clone RP23-14C17, complete sequence
          Length = 230988

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    actgagagaggaagccta 28
             ||||||||||||||||||
Sbjct: 79531 actgagagaggaagccta 79514



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>gb|AC121904.2| Mus musculus BAC clone RP24-175O7 from 7, complete sequence
          Length = 162770

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    aggaagcctacaacaaac 36
             ||||||||||||||||||
Sbjct: 35459 aggaagcctacaacaaac 35476



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>emb|AL353643.10| Human DNA sequence from clone RP11-359J23 on chromosome 10, complete
             sequence
          Length = 130077

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 15    agagaggaagcctacaacaaac 36
             |||||||| |||||||||||||
Sbjct: 11768 agagaggatgcctacaacaaac 11789



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>emb|AL139383.14| Human DNA sequence from clone RP11-87G1 on chromosome 13q12.2-13.2
              Contains part of a novel gene and a CpG island, complete
              sequence
          Length = 182917

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 6      aaccaactgagagaggaa 23
              ||||||||||||||||||
Sbjct: 103618 aaccaactgagagaggaa 103635



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>emb|AJ719375.1| Gallus gallus mRNA for hypothetical protein, clone 1l21
          Length = 2138

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 32/37 (86%)
 Strand = Plus / Minus

                                                 
Query: 16   gagaggaagcctacaacaaacgcntcaccagcgccat 52
            |||||||||||| ||||||| || || ||||| ||||
Sbjct: 1017 gagaggaagcctccaacaaatgcatctccagccccat 981



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>ref|NM_001006501.1| Gallus gallus adenosine kinase (ADK), mRNA
          Length = 2138

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 32/37 (86%)
 Strand = Plus / Minus

                                                 
Query: 16   gagaggaagcctacaacaaacgcntcaccagcgccat 52
            |||||||||||| ||||||| || || ||||| ||||
Sbjct: 1017 gagaggaagcctccaacaaatgcatctccagccccat 981



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>gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, complete sequence
          Length = 163541

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    agaggaagcctacaacaa 34
             ||||||||||||||||||
Sbjct: 90230 agaggaagcctacaacaa 90213



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>gb|AC157988.5| Mus musculus chromosome 3, clone RP23-149E4, complete sequence
          Length = 216259

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 11   actgagagaggaagccta 28
            ||||||||||||||||||
Sbjct: 2893 actgagagaggaagccta 2876



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>gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complete sequence
          Length = 163490

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    gaagcctacaacaaacgc 38
             ||||||||||||||||||
Sbjct: 76865 gaagcctacaacaaacgc 76848



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>dbj|AP005353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1052E11, complete
              sequence
          Length = 158817

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     agaggaagcctacaacaa 34
              ||||||||||||||||||
Sbjct: 154583 agaggaagcctacaacaa 154566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 341,351
Number of Sequences: 3902068
Number of extensions: 341351
Number of successful extensions: 79927
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79841
Number of HSP's gapped (non-prelim): 86
length of query: 55
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 35
effective length of database: 17,155,003,908
effective search space: 600425136780
effective search space used: 600425136780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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