| Clone Name | rbags3k17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506873.1| PREDICTED Oryza sativa (japonica cultivar-group), B1215B07.34 mRNA Length = 1334 Score = 61.9 bits (31), Expect = 1e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||||||| || |||||||||||| ||||||| || ||||||||||||| Sbjct: 1032 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 983
>ref|XM_466836.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1334 Score = 61.9 bits (31), Expect = 1e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||||||| || |||||||||||| ||||||| || ||||||||||||| Sbjct: 1032 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 983
>gb|AY224510.1| Oryza sativa (japonica cultivar-group) isolate 23502 adenosine kinase-like protein mRNA, partial cds Length = 1113 Score = 61.9 bits (31), Expect = 1e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||||||| || |||||||||||| ||||||| || ||||||||||||| Sbjct: 1011 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 962
>dbj|AK101791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065J11, full insert sequence Length = 1334 Score = 61.9 bits (31), Expect = 1e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||||||| || |||||||||||| ||||||| || ||||||||||||| Sbjct: 1032 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 983
>dbj|AK059771.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H06, full insert sequence Length = 1335 Score = 61.9 bits (31), Expect = 1e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||||||| || |||||||||||| ||||||| || ||||||||||||| Sbjct: 1033 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 984
>dbj|AK059188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G12, full insert sequence Length = 1158 Score = 61.9 bits (31), Expect = 1e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||||||| || |||||||||||| ||||||| || ||||||||||||| Sbjct: 877 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 828
>dbj|AB050624.1| Oryza sativa OsAK mRNA for adenosine kinase, complete cds Length = 1332 Score = 61.9 bits (31), Expect = 1e-07 Identities = 45/50 (90%) Strand = Plus / Minus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||||||| || |||||||||||| ||||||| || ||||||||||||| Sbjct: 1028 ttgaaccaattgtgagaggaagcctccaacaaaggcatcaccagcgccat 979
>emb|AJ012281.1|ZMA012281 Zea mays mRNA for adenosine kinase, putative Length = 1260 Score = 46.1 bits (23), Expect = 0.008 Identities = 40/46 (86%) Strand = Plus / Minus Query: 5 gaaccaactgagagaggaagcctacaacaaacgcntcaccagcgcc 50 |||||||||| |||||||||||| |||| || || ||||| ||||| Sbjct: 893 gaaccaactgtgagaggaagcctccaacgaaagcatcacctgcgcc 848
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.008 Identities = 37/42 (88%) Strand = Plus / Plus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcacc 44 ||||||||| || |||||||||||| ||||||| || ||||| Sbjct: 24959644 ttgaaccaattgtgagaggaagcctccaacaaaggcatcacc 24959685
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 46.1 bits (23), Expect = 0.008 Identities = 37/42 (88%) Strand = Plus / Plus Query: 3 ttgaaccaactgagagaggaagcctacaacaaacgcntcacc 44 ||||||||| || |||||||||||| ||||||| || ||||| Sbjct: 120927 ttgaaccaattgtgagaggaagcctccaacaaaggcatcacc 120968
>gb|AY103880.1| Zea mays PCO064637 mRNA sequence Length = 1560 Score = 46.1 bits (23), Expect = 0.008 Identities = 40/46 (86%) Strand = Plus / Minus Query: 5 gaaccaactgagagaggaagcctacaacaaacgcntcaccagcgcc 50 |||||||||| |||||||||||| |||| || || ||||| ||||| Sbjct: 1032 gaaccaactgtgagaggaagcctccaacgaaagcatcacctgcgcc 987
>gb|AY695055.1| Nicotiana tabacum adenosine kinase isoform 2T mRNA, complete cds Length = 1306 Score = 42.1 bits (21), Expect = 0.13 Identities = 44/52 (84%) Strand = Plus / Minus Query: 1 ccttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||| |||||||| | ||||| ||| ||||||| || ||||||||||||| Sbjct: 972 ccttggaccaactgtgcaaggaatcctccaacaaatgcatcaccagcgccat 921
>gb|AY695054.1| Nicotiana tabacum adenosine kinase isoform 2T mRNA, complete cds Length = 1259 Score = 42.1 bits (21), Expect = 0.13 Identities = 44/52 (84%) Strand = Plus / Minus Query: 1 ccttgaaccaactgagagaggaagcctacaacaaacgcntcaccagcgccat 52 ||||| |||||||| | ||||| ||| ||||||| || ||||||||||||| Sbjct: 972 ccttggaccaactgtgcaaggaatcctccaacaaatgcatcaccagcgccat 921
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 aaccaactgagagaggaag 24 ||||||||||||||||||| Sbjct: 36023 aaccaactgagagaggaag 36005
>emb|AL645760.15| Mouse DNA sequence from clone DN-262D11 on chromosome 3 Contains the 5' end of the Man1b gene for mannosidase 1 beta, a pseudogene similar to arylsulfatase A (Arsa) and a CpG island, complete sequence Length = 135825 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tgagagaggaagcctacaa 31 ||||||||||||||||||| Sbjct: 93733 tgagagaggaagcctacaa 93751
>gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, complete sequence Length = 121054 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 accaactgagagaggaagc 25 ||||||||||||||||||| Sbjct: 54570 accaactgagagaggaagc 54552
>emb|AL606744.30| Mouse DNA sequence from clone RP23-267O21 on chromosome 3, complete sequence Length = 185867 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 tgagagaggaagcctacaa 31 ||||||||||||||||||| Sbjct: 62891 tgagagaggaagcctacaa 62909
>gb|AE008401.1|AE008401 Streptococcus pneumoniae R6 section 17 of 184 of the complete genome Length = 10952 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ttgaaccaactgagagagg 21 ||||||||||||||||||| Sbjct: 5554 ttgaaccaactgagagagg 5572
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ttgaaccaactgagagagg 21 ||||||||||||||||||| Sbjct: 190672 ttgaaccaactgagagagg 190690
>gb|AC115749.12| Mus musculus chromosome 3, clone RP23-14C17, complete sequence Length = 230988 Score = 36.2 bits (18), Expect = 7.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 actgagagaggaagccta 28 |||||||||||||||||| Sbjct: 79531 actgagagaggaagccta 79514
>gb|AC121904.2| Mus musculus BAC clone RP24-175O7 from 7, complete sequence Length = 162770 Score = 36.2 bits (18), Expect = 7.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 aggaagcctacaacaaac 36 |||||||||||||||||| Sbjct: 35459 aggaagcctacaacaaac 35476
>emb|AL353643.10| Human DNA sequence from clone RP11-359J23 on chromosome 10, complete sequence Length = 130077 Score = 36.2 bits (18), Expect = 7.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 15 agagaggaagcctacaacaaac 36 |||||||| ||||||||||||| Sbjct: 11768 agagaggatgcctacaacaaac 11789
>emb|AL139383.14| Human DNA sequence from clone RP11-87G1 on chromosome 13q12.2-13.2 Contains part of a novel gene and a CpG island, complete sequence Length = 182917 Score = 36.2 bits (18), Expect = 7.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 aaccaactgagagaggaa 23 |||||||||||||||||| Sbjct: 103618 aaccaactgagagaggaa 103635
>emb|AJ719375.1| Gallus gallus mRNA for hypothetical protein, clone 1l21 Length = 2138 Score = 36.2 bits (18), Expect = 7.7 Identities = 32/37 (86%) Strand = Plus / Minus Query: 16 gagaggaagcctacaacaaacgcntcaccagcgccat 52 |||||||||||| ||||||| || || ||||| |||| Sbjct: 1017 gagaggaagcctccaacaaatgcatctccagccccat 981
>ref|NM_001006501.1| Gallus gallus adenosine kinase (ADK), mRNA Length = 2138 Score = 36.2 bits (18), Expect = 7.7 Identities = 32/37 (86%) Strand = Plus / Minus Query: 16 gagaggaagcctacaacaaacgcntcaccagcgccat 52 |||||||||||| ||||||| || || ||||| |||| Sbjct: 1017 gagaggaagcctccaacaaatgcatctccagccccat 981
>gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, complete sequence Length = 163541 Score = 36.2 bits (18), Expect = 7.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 agaggaagcctacaacaa 34 |||||||||||||||||| Sbjct: 90230 agaggaagcctacaacaa 90213
>gb|AC157988.5| Mus musculus chromosome 3, clone RP23-149E4, complete sequence Length = 216259 Score = 36.2 bits (18), Expect = 7.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 actgagagaggaagccta 28 |||||||||||||||||| Sbjct: 2893 actgagagaggaagccta 2876
>gb|AC140250.3| Mus musculus BAC clone RP24-288J3 from 1, complete sequence Length = 163490 Score = 36.2 bits (18), Expect = 7.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 21 gaagcctacaacaaacgc 38 |||||||||||||||||| Sbjct: 76865 gaagcctacaacaaacgc 76848
>dbj|AP005353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1052E11, complete sequence Length = 158817 Score = 36.2 bits (18), Expect = 7.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 agaggaagcctacaacaa 34 |||||||||||||||||| Sbjct: 154583 agaggaagcctacaacaa 154566 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 341,351 Number of Sequences: 3902068 Number of extensions: 341351 Number of successful extensions: 79927 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79841 Number of HSP's gapped (non-prelim): 86 length of query: 55 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 35 effective length of database: 17,155,003,908 effective search space: 600425136780 effective search space used: 600425136780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)