ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CF115_HUMAN (Q9P1F3) Protein C6orf115 76 3e-14
2MTBC1_METAC (Q8TTB0) Dimethylamine corrinoid protein 1 28 4.6
3RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... 28 6.0
4CAPP_STRAW (Q82HE3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 28 6.0
5MTBC3_METMA (P58981) Dimethylamine corrinoid protein 3 28 7.8

>CF115_HUMAN (Q9P1F3) Protein C6orf115|
          Length = 81

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 35/60 (58%), Positives = 43/60 (71%)
 Frame = -1

Query: 184 HVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFNDDRCANIFXXLVGTXXPAKKRKVVTY 5
           +V+ EV  L EEI RLG +  DG   VKFGV+F DD+CAN+F  LVGT   AK+RK+VTY
Sbjct: 2   NVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVTY 61



to top

>MTBC1_METAC (Q8TTB0) Dimethylamine corrinoid protein 1|
          Length = 213

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 208 ERGAMNIGHVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFN 83
           ERG + + HV      +   ++ L    P+GS   K GVI N
Sbjct: 55  ERGKLFLPHVMMAADAMTAGVEALKDLMPEGSASSKMGVIVN 96



to top

>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
            (Helicase-like protein NHL)
          Length = 1400

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 231  DARRDLGAAGC*QILAFL 284
            DARR LG+AGC Q+LA L
Sbjct: 1066 DARRALGSAGCSQLLAAL 1083



to top

>CAPP_STRAW (Q82HE3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 910

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 196 MNIGHVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFNDDRCAN 65
           ++ G V + +  L  E++R+G Q PD +  + FG     DR  N
Sbjct: 206 LHAGAVGDVLEDLTAELERVGVQLPDDTRPLTFGTWIGGDRDGN 249



to top

>MTBC3_METMA (P58981) Dimethylamine corrinoid protein 3|
          Length = 167

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 208 ERGAMNIGHVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFN 83
           ERG + + HV      +   +  L    P+GS   K GVI N
Sbjct: 9   ERGKLFLPHVMMAADAMTAGVNALKDLMPEGSASSKMGVIVN 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,456,335
Number of Sequences: 219361
Number of extensions: 313042
Number of successful extensions: 1125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top