| Clone Name | rbags3k02 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | CF115_HUMAN (Q9P1F3) Protein C6orf115 | 76 | 3e-14 | 2 | MTBC1_METAC (Q8TTB0) Dimethylamine corrinoid protein 1 | 28 | 4.6 | 3 | RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... | 28 | 6.0 | 4 | CAPP_STRAW (Q82HE3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... | 28 | 6.0 | 5 | MTBC3_METMA (P58981) Dimethylamine corrinoid protein 3 | 28 | 7.8 |
|---|
>CF115_HUMAN (Q9P1F3) Protein C6orf115| Length = 81 Score = 75.9 bits (185), Expect = 3e-14 Identities = 35/60 (58%), Positives = 43/60 (71%) Frame = -1 Query: 184 HVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFNDDRCANIFXXLVGTXXPAKKRKVVTY 5 +V+ EV L EEI RLG + DG VKFGV+F DD+CAN+F LVGT AK+RK+VTY Sbjct: 2 NVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVTY 61
>MTBC1_METAC (Q8TTB0) Dimethylamine corrinoid protein 1| Length = 213 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 208 ERGAMNIGHVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFN 83 ERG + + HV + ++ L P+GS K GVI N Sbjct: 55 ERGKLFLPHVMMAADAMTAGVEALKDLMPEGSASSKMGVIVN 96
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = +3 Query: 231 DARRDLGAAGC*QILAFL 284 DARR LG+AGC Q+LA L Sbjct: 1066 DARRALGSAGCSQLLAAL 1083
>CAPP_STRAW (Q82HE3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 910 Score = 28.1 bits (61), Expect = 6.0 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -1 Query: 196 MNIGHVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFNDDRCAN 65 ++ G V + + L E++R+G Q PD + + FG DR N Sbjct: 206 LHAGAVGDVLEDLTAELERVGVQLPDDTRPLTFGTWIGGDRDGN 249
>MTBC3_METMA (P58981) Dimethylamine corrinoid protein 3| Length = 167 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -1 Query: 208 ERGAMNIGHVEEEVGRLKEEIQRLGQQQPDGSXXVKFGVIFN 83 ERG + + HV + + L P+GS K GVI N Sbjct: 9 ERGKLFLPHVMMAADAMTAGVNALKDLMPEGSASSKMGVIVN 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,456,335 Number of Sequences: 219361 Number of extensions: 313042 Number of successful extensions: 1125 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1124 length of database: 80,573,946 effective HSP length: 72 effective length of database: 64,779,954 effective search space used: 1554718896 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)