ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3k02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105317.1| Zea mays PCO123556 mRNA sequence 141 1e-30
2dbj|AK062756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 5e-27
3gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 96 7e-17
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 96 7e-17
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 96 7e-17
6ref|XM_748369.1| Aspergillus fumigatus Af293 Rho guanyl nucleoti... 42 0.97
7gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 3.8
8gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 3.8
9ref|XM_594837.2| PREDICTED: Bos taurus similar to two pore segme... 40 3.8
10gb|AC147376.4| Mus musculus BAC clone RP23-425F8 from chromosome... 40 3.8
11gb|AC125073.4| Mus musculus BAC clone RP23-463H17 from chromosom... 40 3.8
12ref|XM_504456.1| Yarrowia lipolytica CLIB122, YALI0E27181g predi... 40 3.8
13emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 3.8
14emb|AJ633046.1| Ipomoea nil partial mRNA for putative CRC transc... 40 3.8
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.8
16dbj|AB100016.1| Leiognathus elongatus mitochondrial genes for NA... 40 3.8
17emb|Z71633.1|SCYNR018W S.cerevisiae chromosome XIV reading frame... 40 3.8
18gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.8
19emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 3.8 
>gb|AY105317.1| Zea mays PCO123556 mRNA sequence
          Length = 730

 Score =  141 bits (71), Expect = 1e-30
 Identities = 140/166 (84%)
 Strand = Plus / Minus

                                                                       
Query: 18  ttcctcttcttggcgggnngnaaggtgccaactaannctncaaatatgtttgcacatcgg 77
           ||||||||||||||||     |||||||||||||   || |||| || |||||||| || 
Sbjct: 356 ttcctcttcttggcggccctcaaggtgccaactagtgcttcaaagatatttgcacaccga 297

                                                                       
Query: 78  tcatcattgaagatgacaccaaatttgacctnnaangagccgtcgggctgctgctggccg 137
           || || |||||||  || ||||| |||||||   | ||||| ||||||||||||||||||
Sbjct: 296 tcgtcgttgaagagaacgccaaacttgaccttgtaagagccatcgggctgctgctggccg 237

                                                         
Query: 138 agcctctggatctcctccttgagcctcccgacctcctcctcgacgt 183
           ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 236 agcctatggatctcctccttgagcctcccgacctcctcctccacgt 191
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>dbj|AK062756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G08, full
           insert sequence
          Length = 543

 Score =  129 bits (65), Expect = 5e-27
 Identities = 143/172 (83%)
 Strand = Plus / Minus

                                                                       
Query: 12  acaactttcctcttcttggcgggnngnaaggtgccaactaannctncaaatatgtttgca 71
           |||| ||| ||||||||||| |   | |||||||| ||||   || ||||||||||||||
Sbjct: 256 acaatttttctcttcttggcagcccgcaaggtgccgactagtgcttcaaatatgtttgca 197

                                                                       
Query: 72  catcggtcatcattgaagatgacaccaaatttgacctnnaangagccgtcgggctgctgc 131
           || |||||||| |||||||| ||||| ||  | ||||   | || || |||||||||| |
Sbjct: 196 caacggtcatcgttgaagataacaccgaaagttaccttgtaggatccatcgggctgcttc 137

                                                               
Query: 132 tggccgagcctctggatctcctccttgagcctcccgacctcctcctcgacgt 183
           |||||||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct: 136 tggccgagcctctggatctcctccttgagcttccccacctcctcctccacgt 85
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>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
             sequence
          Length = 150155

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                         
Query: 120   tcgggctgctgctggccgagcctctggatctcctccttgagcctcccgacctcctcctcg 179
             |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| 
Sbjct: 43531 tcgggctgcttctggccgagcctctggatctcctccttgagcttccccacctcctcctcc 43590

                 
Query: 180   acgt 183
             ||||
Sbjct: 43591 acgt 43594



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 12    acaactttcctcttcttggcgggnngnaaggtgccaactaannctncaaatatgtttgca 71
             |||| ||| ||||||||||| |   | |||||||| ||||   || ||||||||||||||
Sbjct: 41607 acaatttttctcttcttggcagcccgcaaggtgccgactagtgcttcaaatatgtttgca 41666

                                       
Query: 72    catcggtcatcattgaagatgacacc 97
             || |||||||| |||||||| |||||
Sbjct: 41667 caacggtcatcgttgaagataacacc 41692
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 60/64 (93%)
 Strand = Plus / Minus

                                                                            
Query: 120      tcgggctgctgctggccgagcctctggatctcctccttgagcctcccgacctcctcctcg 179
                |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| 
Sbjct: 27260864 tcgggctgcttctggccgagcctctggatctcctccttgagcttccccacctcctcctcc 27260805

                    
Query: 180      acgt 183
                ||||
Sbjct: 27260804 acgt 27260801



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                            
Query: 12       acaactttcctcttcttggcgggnngnaaggtgccaactaannctncaaatatgtttgca 71
                |||| ||| ||||||||||| |   | |||||||| ||||   || ||||||||||||||
Sbjct: 27262788 acaatttttctcttcttggcagcccgcaaggtgccgactagtgcttcaaatatgtttgca 27262729

                                          
Query: 72       catcggtcatcattgaagatgacacc 97
                || |||||||| |||||||| |||||
Sbjct: 27262728 caacggtcatcgttgaagataacacc 27262703
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 7e-17
 Identities = 60/64 (93%)
 Strand = Plus / Minus

                                                                            
Query: 120      tcgggctgctgctggccgagcctctggatctcctccttgagcctcccgacctcctcctcg 179
                |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| 
Sbjct: 27352187 tcgggctgcttctggccgagcctctggatctcctccttgagcttccccacctcctcctcc 27352128

                    
Query: 180      acgt 183
                ||||
Sbjct: 27352127 acgt 27352124



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                            
Query: 12       acaactttcctcttcttggcgggnngnaaggtgccaactaannctncaaatatgtttgca 71
                |||| ||| ||||||||||| |   | |||||||| ||||   || ||||||||||||||
Sbjct: 27354111 acaatttttctcttcttggcagcccgcaaggtgccgactagtgcttcaaatatgtttgca 27354052

                                          
Query: 72       catcggtcatcattgaagatgacacc 97
                || |||||||| |||||||| |||||
Sbjct: 27354051 caacggtcatcgttgaagataacacc 27354026
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>ref|XM_748369.1| Aspergillus fumigatus Af293 Rho guanyl nucleotide exchange factor
            (Afu5g11890) partial mRNA
          Length = 4656

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 148  tctcctccttgagcctcccgacctcctcc 176
            |||||| |||||||||||||| |||||||
Sbjct: 4579 tctccttcttgagcctcccgatctcctcc 4551
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 114     gagccgtcgggctgctgctg 133
               ||||||||||||||||||||
Sbjct: 3991523 gagccgtcgggctgctgctg 3991504
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     tcgggctgctgctggccgag 139
               ||||||||||||||||||||
Sbjct: 1856035 tcgggctgctgctggccgag 1856016
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>ref|XM_594837.2| PREDICTED: Bos taurus similar to two pore segment channel 2
           (LOC516679), mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 cgtcgggctgctgctggccg 137
           ||||||||||||||||||||
Sbjct: 132 cgtcgggctgctgctggccg 151
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>gb|AC147376.4| Mus musculus BAC clone RP23-425F8 from chromosome 5, complete sequence
          Length = 199885

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   taacaaattcttgctttcct 283
             ||||||||||||||||||||
Sbjct: 70169 taacaaattcttgctttcct 70188
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>gb|AC125073.4| Mus musculus BAC clone RP23-463H17 from chromosome 5, complete sequence
          Length = 164030

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    taacaaattcttgctttcct 283
              ||||||||||||||||||||
Sbjct: 128367 taacaaattcttgctttcct 128386
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>ref|XM_504456.1| Yarrowia lipolytica CLIB122, YALI0E27181g predicted mRNA
          Length = 2067

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 ctggatctcctccttgagcc 162
           ||||||||||||||||||||
Sbjct: 612 ctggatctcctccttgagcc 593
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   gccgtcgggctgctgctggc 135
             ||||||||||||||||||||
Sbjct: 94251 gccgtcgggctgctgctggc 94232
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>emb|AJ633046.1| Ipomoea nil partial mRNA for putative CRC transcription factor 2
           (crc2 gene)
          Length = 350

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 cctctggatctcctccttga 159
           ||||||||||||||||||||
Sbjct: 285 cctctggatctcctccttga 266
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ccgacctcctcctcgacgtg 184
              ||||||||||||||||||||
Sbjct: 875435 ccgacctcctcctcgacgtg 875454
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>dbj|AB100016.1| Leiognathus elongatus mitochondrial genes for NADH dehydrogenase
            subunits 4, tRNA-His, tRNA-Ser, tRNA-Leu, NADH
            dehydrogenase subunits 5
          Length = 3419

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 209  cctcgccggtttcttctccgatgatgct 236
            ||||||||||||||||||| | ||||||
Sbjct: 2757 cctcgccggtttcttctccaaagatgct 2784
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>emb|Z71633.1|SCYNR018W S.cerevisiae chromosome XIV reading frame ORF YNR018w
          Length = 1757

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 117  ccgtcgggctgctgctggcc 136
            ||||||||||||||||||||
Sbjct: 1161 ccgtcgggctgctgctggcc 1180
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     cgtcgggctgctgctggccg 137
               ||||||||||||||||||||
Sbjct: 1125177 cgtcgggctgctgctggccg 1125158
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 143     ctggatctcctccttgagcc 162
               ||||||||||||||||||||
Sbjct: 3221648 ctggatctcctccttgagcc 3221629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,504,824
Number of Sequences: 3902068
Number of extensions: 2504824
Number of successful extensions: 46615
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46292
Number of HSP's gapped (non-prelim): 321
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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