>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  525 bits (265), Expect = e-146
 Identities = 350/385 (90%), Gaps = 3/385 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    tacacaaacatnatataatgagatccagattaaatacatcatcattgtgccctaaaaata 60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  tacacaaacatcatataatgagatccagattaaatacatcatcattgtgccctaaaaata 688

                                                                        
Query: 61   tggatctgtccaaaaatcctacaccgtttgttgatgattgaccaaccacgaccgtatcag 120
            ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct: 689  tggatctgtccaaaaatcctacaccgtttgttgatgattgaccaaccgcagccgtatcag 748

                                                                        
Query: 121  gccgagatcgatcgatgacgcnnnnnnnnnngggggaagaaacgacncanngganccaat 180
            ||||||||| |||||||||||          ||||||||||||||| ||  ||| |||||
Sbjct: 749  gccgagatcaatcgatgacgcaaaaaaaa--gggggaagaaacgacgcaatggaaccaat 806

                                                                        
Query: 181  tntnctatacttattcctcgcangttgggtgataaaaaatctntggtnggtagaatntaa 240
            | | |||||||||||||||||| ||||||||||||||| ||| |||| |||||||| |||
Sbjct: 807  tatactatacttattcctcgcaagttgggtgataaaaa-tctctggtaggtagaatataa 865

                                                                        
Query: 241  ctgacacaacagtcttcgaactggagatncaaacatgatgaacacggnggngaagccaca 300
            |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||
Sbjct: 866  ctgacacaacagtcttcgaactggagatacaaacatgatgaacacggaggtgaagccaca 925

                                                                        
Query: 301  ntagtcgtcgtcgccacttatnttatntcgattgtgtaggggagcanaggaggcctgagg 360
             |||||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 926  atagtcgtcgttgccacttatcttatctcgattgtgtaggggagcagaggaggcctgagg 985

                                     
Query: 361  cgtccgccccgaccaccganagctc 385
            ||||||||||||||||||| |||||
Sbjct: 986  cgtccgccccgaccaccgagagctc 1010

>gb|AF176226.1|AF176226 Triticum aestivum COP alpha homolog mRNA, partial cds
          Length = 1826

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 331  attgtgtaggggagcanaggaggcctgaggcgtccgccccgaccac 376
            |||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 1591 attgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccac 1546

>ref|XM_469513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3657

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 323  ttatntcgattgtgtaggggagcanaggaggcctga 358
            |||| |||| || ||||||||||| |||||||||||
Sbjct: 3657 ttatctcgactgcgtaggggagcagaggaggcctga 3622

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 323      ttatntcgattgtgtaggggagcanaggaggcctga 358
                |||| |||| || ||||||||||| |||||||||||
Sbjct: 28424886 ttatctcgactgcgtaggggagcagaggaggcctga 28424921

>emb|AL590377.4| Human DNA sequence from clone RP11-492A12 on chromosome 9 Contains part
              of a novel gene (FLJ20276) and a CGI-51 protein pseudogene,
              complete sequence
          Length = 129610

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 44     attgtgccctaaaaatatggat 65
              ||||||||||||||||||||||
Sbjct: 124014 attgtgccctaaaaatatggat 124035

>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 204302

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 21    agatccagattaaatacatcatcatt 46
             ||||||||||||||||| ||||||||
Sbjct: 88104 agatccagattaaatacttcatcatt 88129

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 323      ttatntcgattgtgtaggggagcanaggaggcctga 358
                |||| |||| || ||||||||||| |||||||||||
Sbjct: 28516210 ttatctcgactgcgtaggggagcagaggaggcctga 28516245

>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
             sequence
          Length = 143681

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 323   ttatntcgattgtgtaggggagcanaggaggcctga 358
             |||| |||| || ||||||||||| |||||||||||
Sbjct: 19016 ttatctcgactgcgtaggggagcagaggaggcctga 19051

>dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G08, full
            insert sequence
          Length = 4221

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 323  ttatntcgattgtgtaggggagcanaggaggcctga 358
            |||| |||| || ||||||||||| |||||||||||
Sbjct: 3801 ttatctcgactgcgtaggggagcagaggaggcctga 3766

>dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C10, full
           insert sequence
          Length = 1032

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 323 ttatntcgattgtgtaggggagcanaggaggcctga 358
           |||| |||| || ||||||||||| |||||||||||
Sbjct: 905 ttatctcgactgcgtaggggagcagaggaggcctga 870

>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 53     taaaaatatggatctgtccaaaaat 77
              ||||||||| |||||||||||||||
Sbjct: 118754 taaaaatatagatctgtccaaaaat 118778

>ref|XM_450153.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1736

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 336  gtaggggagcanaggaggcctga 358
            ||||||||||| |||||||||||
Sbjct: 1502 gtaggggagcagaggaggcctga 1480

>gb|AC107769.7| Mus musculus chromosome 16, clone RP23-130N20, complete sequence
          Length = 192682

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     atatggatctgtccaaaaatccta 81
              ||||| ||||||||||||||||||
Sbjct: 126616 atatgtatctgtccaaaaatccta 126593

>gb|AY188257.1| Microstrobos fitzgeraldii small ribosomal protein 4 (rps4) gene,
           partial cds; chloroplast gene for chloroplast product
          Length = 617

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 53  taaaaatatggatctgtccaaaaa 76
           ||||||||| ||||||||||||||
Sbjct: 374 taaaaatatagatctgtccaaaaa 397

>gb|AY188256.1| Lepidothamnus intermedius small ribosomal protein 4 (rps4) gene,
           partial cds; chloroplast gene for chloroplast product
          Length = 621

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 53  taaaaatatggatctgtccaaaaa 76
           ||||||||| ||||||||||||||
Sbjct: 375 taaaaatatagatctgtccaaaaa 398

>gb|AY188254.1| Afrocarpus falcatus small ribosomal protein 4 (rps4) gene, partial
           cds; chloroplast gene for chloroplast product
          Length = 651

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 53  taaaaatatggatctgtccaaaaa 76
           ||||||||| ||||||||||||||
Sbjct: 387 taaaaatatagatctgtccaaaaa 410

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 336     gtaggggagcanaggaggcctga 358
               ||||||||||| |||||||||||
Sbjct: 2074206 gtaggggagcagaggaggcctga 2074228

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 361     cgtccgccccgaccaccganagc 383
               ||||||||||||||||||| |||
Sbjct: 3046440 cgtccgccccgaccaccgacagc 3046462

>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1352_A10
          Length = 111655

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 336    gtaggggagcanaggaggcctga 358
              ||||||||||| |||||||||||
Sbjct: 109573 gtaggggagcagaggaggcctga 109595

>ref|XM_308807.2| Anopheles gambiae str. PEST ENSANGP00000021654 (ENSANGG00000019165),
            partial mRNA
          Length = 2516

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  ggcgtccgccccgaccaccg 378
            ||||||||||||||||||||
Sbjct: 1017 ggcgtccgccccgaccaccg 998

>dbj|AK105672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A08, full
            insert sequence
          Length = 3045

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 336  gtaggggagcanaggaggcctga 358
            ||||||||||| |||||||||||
Sbjct: 2567 gtaggggagcagaggaggcctga 2545

>dbj|AK103786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I16, full
            insert sequence
          Length = 4284

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 336  gtaggggagcanaggaggcctga 358
            ||||||||||| |||||||||||
Sbjct: 3871 gtaggggagcagaggaggcctga 3849

>gb|U04883.1|MSU04883 Mesepiola specca mitochondrion tRNA-Leu gene, complete sequence,
          and cytochrome oxidase subunit I and II genes, partial
          cds
          Length = 780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 cagattaaatacatcatcat 45
          ||||||||||||||||||||
Sbjct: 68 cagattaaatacatcatcat 87

>dbj|AK058402.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B07, full
            insert sequence
          Length = 1736

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 336  gtaggggagcanaggaggcctga 358
            ||||||||||| |||||||||||
Sbjct: 1502 gtaggggagcagaggaggcctga 1480

>gb|AY104039.1| Zea mays PCO096800 mRNA sequence
          Length = 1207

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 336 gtaggggagcanaggaggcctgaggcgtccgcccc 370
           ||||||||||| |  |||||||||||||| |||||
Sbjct: 880 gtaggggagcagaccaggcctgaggcgtctgcccc 846


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,861,129
Number of Sequences: 3902068
Number of extensions: 1861129
Number of successful extensions: 29890
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29751
Number of HSP's gapped (non-prelim): 138
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)