Clone Information

BLAST Search Result

Clone Name	rbags3i09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK101600.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	565	e-158
2	dbj\|AK067233.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	565	e-158
3	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	222	1e-54
4	dbj\|AP003543.3\| Oryza sativa (japonica cultivar-group) genomic D...	222	1e-54
5	gb\|AC125094.5\| Mus musculus BAC clone RP24-176L12 from chromosom...	44	0.60
6	gb\|AC161816.5\| Mus musculus BAC clone RP23-308L3 from chromosome...	44	0.60
7	gb\|AC005868.1\| Homo sapiens 12q24.2 PAC RPCI5-944M2 (Roswell Par...	44	0.60
8	gb\|AC110883.12\| Mus musculus chromosome 8, clone RP23-200N24, co...	42	2.4
9	gb\|AC096051.7\| Rattus norvegicus 10 BAC CH230-21G1 (Children's H...	42	2.4
10	emb\|AL627283.1\| Salmonella enterica serovar Typhi (Salmonella ty...	42	2.4
11	emb\|BX546452.9\| Zebrafish DNA sequence from clone DKEYP-8B11 in ...	42	2.4
12	gb\|AF404306.1\| Rhizophydium sp. 136 mitochondrion, complete genome	42	2.4
13	gb\|AC100795.2\| Homo sapiens chromosome 18, clone RP11-956K8, com...	42	2.4
14	ref\|XM_628278.1\| Cryptosporidium parvum Iowa II hypothetical pro...	42	2.4
15	gb\|AC023263.4\|AC023263 Homo sapiens, clone RP11-590E14, complete...	42	2.4
16	emb\|BX072576.4\| Zebrafish DNA sequence from clone DKEY-242E21 in...	42	2.4
17	emb\|BX004869.13\| Zebrafish DNA sequence from clone CH211-69E21 i...	42	2.4
18	gb\|AE014613.1\| Salmonella enterica subsp. enterica serovar Typhi...	42	2.4
19	gb\|AC099975.11\| Mus musculus chromosome 5, clone RP23-23A2, comp...	40	9.4
20	gb\|AC166332.7\| Mus musculus chromosome 1, clone RP24-266F18, com...	40	9.4
21	ref\|XM_865548.1\| PREDICTED: Bos taurus hypothetical protein LOC6...	40	9.4
22	ref\|XM_712407.1\| Candida albicans SC5314 fumarate hydratase (CaO...	40	9.4
23	ref\|XM_712313.1\| Candida albicans SC5314 fumarate hydratase (CaO...	40	9.4
24	gb\|AC155230.2\| Mus musculus BAC clone RP24-335J14 from chromosom...	40	9.4
25	gb\|BC059959.1\| Xenopus laevis hypothetical protein MGC68494, mRN...	40	9.4
26	gb\|AC004016.1\| Homo sapiens BAC clone CTA-424N5 from 7, complete...	40	9.4
27	gb\|AF266972.1\| Coelia triptera isolate MWC324 chloroplast tRNA-L...	40	9.4
28	ref\|XM_754717.1\| Ustilago maydis 521 hypothetical protein (UM036...	40	9.4
29	gb\|AC124405.4\| Mus musculus BAC clone RP24-372I6 from chromosome...	40	9.4
30	gb\|AC127245.5\| Mus musculus BAC clone RP24-422M4 from chromosome...	40	9.4
31	gb\|AC122251.4\| Mus musculus BAC clone RP23-167J15 from chromosom...	40	9.4
32	emb\|CR762488.16\| Zebrafish DNA sequence from clone DKEY-266J7 in...	40	9.4
33	gb\|AC146026.2\| Pan troglodytes BAC clone RP43-120F17 from 7, com...	40	9.4
34	emb\|AL365190.16\| Human DNA sequence from clone RP11-512H14 on ch...	40	9.4
35	emb\|BX571866.1\| Photorhabdus luminescens subsp. laumondii TTO1 c...	40	9.4
36	emb\|CR376845.7\| Zebrafish DNA sequence from clone CH211-244C8 in...	40	9.4
37	emb\|BX927129.10\| Zebrafish DNA sequence from clone DKEY-158N21 i...	40	9.4
38	emb\|BX928754.9\| Zebrafish DNA sequence from clone DKEY-169I10 in...	40	9.4
39	gb\|AC112513.1\| Oryza sativa chromosome 10 clone OSJNAa0029P06, c...	40	9.4
40	gb\|AC083803.8\| Homo sapiens 3q BAC RP11-142C12 (Roswell Park Can...	40	9.4
41	gb\|AC090873.4\| Oryza sativa chromosome 10 clone OSJNBa0029P06, c...	40	9.4
42	emb\|BX323878.10\| Zebrafish DNA sequence from clone CH211-57E23 i...	40	9.4
43	emb\|BX119930.5\| Zebrafish DNA sequence from clone DKEY-18G4 in l...	40	9.4
44	gb\|AC156542.9\| Mus musculus chromosome 1, clone RP23-370J16, com...	40	9.4
45	gb\|AC159623.3\| Mus musculus BAC clone RP24-308O7 from chromosome...	40	9.4
46	gb\|AC112679.15\| Mus musculus chromosome 1, clone RP23-199H14, co...	40	9.4
47	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
48	gb\|AC106011.3\| Homo sapiens chromosome 8, clone RP11-466A10, com...	40	9.4
49	gb\|AY939844.1\| Cyanophage P-SSM2, complete genome	40	9.4
50	ref\|NM_001004923.1\| Xenopus tropicalis MGC89101 protein (MGC8910...	40	9.4
51	gb\|AC092576.3\| Homo sapiens BAC clone RP11-7N16 from 2, complete...	40	9.4
52	emb\|AL671889.6\| Mouse DNA sequence from clone RP23-390M19 on chr...	40	9.4
53	gb\|BC075380.1\| Xenopus tropicalis MGC89101 protein, mRNA (cDNA c...	40	9.4
54	emb\|BX248090.11\| Zebrafish DNA sequence from clone DKEY-156K12 i...	40	9.4
55	emb\|AL929171.9\| Zebrafish DNA sequence from clone CH211-132P20 i...	40	9.4
56	emb\|CR381623.33\| Zebrafish DNA sequence from clone DKEY-276G15 i...	40	9.4
57	emb\|AL133501.6\|CNS01DV9 Human chromosome 14 DNA sequence BAC R-3...	40	9.4
58	emb\|CR761377.2\| Xenopus tropicalis finished cDNA, clone TEgg038p23	40	9.4
59	gb\|AC116841.11\| Mus musculus chromosome 18, clone RP24-390I10, c...	40	9.4
60	emb\|CR354563.13\| Zebrafish DNA sequence from clone DKEY-210I1 in...	40	9.4
61	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.4
62	emb\|AL929114.8\| Zebrafish DNA sequence from clone CH211-133L11 i...	40	9.4
63	emb\|BX000429.7\| Zebrafish DNA sequence from clone DKEY-77G18, co...	40	9.4
64	gb\|AC164122.5\| Mus musculus BAC clone RP24-409O23 from chromosom...	40	9.4
65	dbj\|AP004910.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	9.4

>dbj|AK101600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051I20, full
            insert sequence
          Length = 1856

 Score =  565 bits (285), Expect = e-158
 Identities = 501/575 (87%)
 Strand = Plus / Minus

                                                                        
Query: 74   tcatccagctaattgactaccacttgaactcagtaaattattaatctctccaattatatg 133
            ||||||||||||||||||| |||| ||||| |||||| |||| |||||||||||||||||
Sbjct: 1781 tcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaattatatg 1722

                                                                        
Query: 134  cactggcctgctatcgaacatagatgaaagtgttgcctcacagagcttctttagttccct 193
            ||| ||||||| ||| || | || ||| || |||| ||| ||||||||||| ||||||||
Sbjct: 1721 caccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagttccct 1662

                                                                        
Query: 194  cgtttttgtaatcgctgcctcttgcttcggccaggatgactttngtgcattttgcagctc 253
             ||||||||||| |||||||||||||| ||||||||||||    ||||||||||||||||
Sbjct: 1661 ggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcattttgcagctc 1602

                                                                        
Query: 254  catgcgcttcactgacaaatnacctaagccttctcgtnccnncacctcatgatgtttctt 313
            ||| ||||| |||||||||| ||||||||||||||||     |||||||||||| |||||
Sbjct: 1601 cattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgatgcttctt 1542

                                                                        
Query: 314  ttcttctaaggttgacaccaatctgtccaaaaatctttnagagttgaggatcattataag 373
             |||||||| ||||| || |||||||| ||||| ||||  |||||||| |||||||||||
Sbjct: 1541 gtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatcattataag 1482

                                                                        
Query: 374  gtcaagagttttctggttagtgagcagagagattgctgaggaaacctctacaagcatatt 433
            ||||||||||||||||||| |||||| ||| || ||||| || |||||| ||||||||||
Sbjct: 1481 gtcaagagttttctggttactgagcaaagatatagctgatgagacctctgcaagcatatt 1422

                                                                        
Query: 434  ctccaaacgatcaggagcatactgttggagaacaaaaggtgagacggcttggacctgatg 493
            ||| |||   |||||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct: 1421 ctctaaattttcaggagcatactgctgcagaacaaaaggtgagacagcttgcacttgatg 1362

                                                                        
Query: 494  ctgtagagatgatgtatcagcatttctcatctccgctaggcgtagggtcaaaaatgattt 553
            |||||||||||||||||||||||| ||||||||| ||| |||| |||||||||||| | |
Sbjct: 1361 ctgtagagatgatgtatcagcattcctcatctcccctaagcgttgggtcaaaaatgctct 1302

                                                                        
Query: 554  cacctcaagtaaatcatccagaatattatttctatattccttctccagcaactgacttct 613
             ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct: 1301 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 1242

                                               
Query: 614  ttcttcagttgaacattcatattgtcctgattcag 648
            |||||||| | ||| || | | |||||||||||||
Sbjct: 1241 ttcttcagctaaactttgagactgtcctgattcag 1207

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>dbj|AK067233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095B21, full
            insert sequence
          Length = 2039

 Score =  565 bits (285), Expect = e-158
 Identities = 501/575 (87%)
 Strand = Plus / Minus

                                                                        
Query: 74   tcatccagctaattgactaccacttgaactcagtaaattattaatctctccaattatatg 133
            ||||||||||||||||||| |||| ||||| |||||| |||| |||||||||||||||||
Sbjct: 1765 tcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaattatatg 1706

                                                                        
Query: 134  cactggcctgctatcgaacatagatgaaagtgttgcctcacagagcttctttagttccct 193
            ||| ||||||| ||| || | || ||| || |||| ||| ||||||||||| ||||||||
Sbjct: 1705 caccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagttccct 1646

                                                                        
Query: 194  cgtttttgtaatcgctgcctcttgcttcggccaggatgactttngtgcattttgcagctc 253
             ||||||||||| |||||||||||||| ||||||||||||    ||||||||||||||||
Sbjct: 1645 ggtttttgtaattgctgcctcttgcttaggccaggatgacgaaagtgcattttgcagctc 1586

                                                                        
Query: 254  catgcgcttcactgacaaatnacctaagccttctcgtnccnncacctcatgatgtttctt 313
            ||| ||||| |||||||||| ||||||||||||||||     |||||||||||| |||||
Sbjct: 1585 cattcgcttaactgacaaatcacctaagccttctcgtagtttcacctcatgatgcttctt 1526

                                                                        
Query: 314  ttcttctaaggttgacaccaatctgtccaaaaatctttnagagttgaggatcattataag 373
             |||||||| ||||| || |||||||| ||||| ||||  |||||||| |||||||||||
Sbjct: 1525 gtcttctaatgttgatactaatctgtctaaaaacctttttgagttgagaatcattataag 1466

                                                                        
Query: 374  gtcaagagttttctggttagtgagcagagagattgctgaggaaacctctacaagcatatt 433
            ||||||||||||||||||| |||||| ||| || ||||| || |||||| ||||||||||
Sbjct: 1465 gtcaagagttttctggttactgagcaaagatatagctgatgagacctctgcaagcatatt 1406

                                                                        
Query: 434  ctccaaacgatcaggagcatactgttggagaacaaaaggtgagacggcttggacctgatg 493
            ||| |||   |||||||||||||| || ||||||||||||||||| ||||| || |||||
Sbjct: 1405 ctctaaattttcaggagcatactgctgcagaacaaaaggtgagacagcttgcacttgatg 1346

                                                                        
Query: 494  ctgtagagatgatgtatcagcatttctcatctccgctaggcgtagggtcaaaaatgattt 553
            |||||||||||||||||||||||| ||||||||| ||| |||| |||||||||||| | |
Sbjct: 1345 ctgtagagatgatgtatcagcattcctcatctcccctaagcgttgggtcaaaaatgctct 1286

                                                                        
Query: 554  cacctcaagtaaatcatccagaatattatttctatattccttctccagcaactgacttct 613
             ||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct: 1285 tacctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttct 1226

                                               
Query: 614  ttcttcagttgaacattcatattgtcctgattcag 648
            |||||||| | ||| || | | |||||||||||||
Sbjct: 1225 ttcttcagctaaactttgagactgtcctgattcag 1191

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  222 bits (112), Expect = 1e-54
 Identities = 175/196 (89%)
 Strand = Plus / Minus

                                                                            
Query: 354      gagttgaggatcattataaggtcaagagttttctggttagtgagcagagagattgctgag 413
                |||||||| |||||||||||||||||||||||||||||| |||||| ||| || ||||| 
Sbjct: 12279284 gagttgagaatcattataaggtcaagagttttctggttactgagcaaagatatagctgat 12279225

                                                                            
Query: 414      gaaacctctacaagcatattctccaaacgatcaggagcatactgttggagaacaaaaggt 473
                || |||||| ||||||||||||| |||   |||||||||||||| || ||||||||||||
Sbjct: 12279224 gagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaacaaaaggt 12279165

                                                                            
Query: 474      gagacggcttggacctgatgctgtagagatgatgtatcagcatttctcatctccgctagg 533
                ||||| ||||| || ||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct: 12279164 gagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatctcccctaag 12279105

                                
Query: 534      cgtagggtcaaaaatg 549
                ||| ||||||||||||
Sbjct: 12279104 cgttgggtcaaaaatg 12279089



 Score =  137 bits (69), Expect = 5e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                            
Query: 74       tcatccagctaattgactaccacttgaactcagtaaattattaatctctccaattatatg 133
                ||||||||||||||||||| |||| ||||| |||||| |||| |||||||||||||||||
Sbjct: 12279954 tcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaattatatg 12279895

                                                                            
Query: 134      cactggcctgctatcgaacatagatgaaagtgttgcctcacagagcttctttagttccct 193
                ||| ||||||| ||| || | || ||| || |||| ||| ||||||||||| ||||||||
Sbjct: 12279894 caccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagttccct 12279835

                                     
Query: 194      cgtttttgtaatcgctgcctc 214
                 ||||||||||| ||||||||
Sbjct: 12279834 ggtttttgtaattgctgcctc 12279814



 Score =  125 bits (63), Expect = 2e-25
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                            
Query: 214      cttgcttcggccaggatgactttngtgcattttgcagctccatgcgcttcactgacaaat 273
                ||||||| ||||||||||||    ||||||||||||||||||| ||||| ||||||||||
Sbjct: 12279545 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 12279486

                                                                            
Query: 274      nacctaagccttctcgtnccnncacctcatgatgtttcttttcttctaaggttgacacca 333
                 ||||||||||||||||     |||||||||||| ||||| |||||||| ||||| || |
Sbjct: 12279485 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 12279426

                                  
Query: 334      atctgtccaaaaatcttt 351
                ||||||| ||||| ||||
Sbjct: 12279425 atctgtctaaaaaccttt 12279408



 Score =  107 bits (54), Expect = 5e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                            
Query: 555      acctcaagtaaatcatccagaatattatttctatattccttctccagcaactgacttctt 614
                ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 12278834 acctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttctt 12278775

                                                  
Query: 615      tcttcagttgaacattcatattgtcctgattcag 648
                ||||||| | ||| || | | |||||||||||||
Sbjct: 12278774 tcttcagctaaactttgagactgtcctgattcag 12278741

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>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0592B08
          Length = 131096

 Score =  222 bits (112), Expect = 1e-54
 Identities = 175/196 (89%)
 Strand = Plus / Minus

                                                                          
Query: 354    gagttgaggatcattataaggtcaagagttttctggttagtgagcagagagattgctgag 413
              |||||||| |||||||||||||||||||||||||||||| |||||| ||| || ||||| 
Sbjct: 116306 gagttgagaatcattataaggtcaagagttttctggttactgagcaaagatatagctgat 116247

                                                                          
Query: 414    gaaacctctacaagcatattctccaaacgatcaggagcatactgttggagaacaaaaggt 473
              || |||||| ||||||||||||| |||   |||||||||||||| || ||||||||||||
Sbjct: 116246 gagacctctgcaagcatattctctaaattttcaggagcatactgctgcagaacaaaaggt 116187

                                                                          
Query: 474    gagacggcttggacctgatgctgtagagatgatgtatcagcatttctcatctccgctagg 533
              ||||| ||||| || ||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct: 116186 gagacagcttgcacttgatgctgtagagatgatgtatcagcattcctcatctcccctaag 116127

                              
Query: 534    cgtagggtcaaaaatg 549
              ||| ||||||||||||
Sbjct: 116126 cgttgggtcaaaaatg 116111



 Score =  137 bits (69), Expect = 5e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                          
Query: 74     tcatccagctaattgactaccacttgaactcagtaaattattaatctctccaattatatg 133
              ||||||||||||||||||| |||| ||||| |||||| |||| |||||||||||||||||
Sbjct: 116976 tcatccagctaattgactaacactcgaacttagtaaagtattgatctctccaattatatg 116917

                                                                          
Query: 134    cactggcctgctatcgaacatagatgaaagtgttgcctcacagagcttctttagttccct 193
              ||| ||||||| ||| || | || ||| || |||| ||| ||||||||||| ||||||||
Sbjct: 116916 caccggcctgccatcaaatacagttgatagcgttgtctcgcagagcttcttgagttccct 116857

                                   
Query: 194    cgtttttgtaatcgctgcctc 214
               ||||||||||| ||||||||
Sbjct: 116856 ggtttttgtaattgctgcctc 116836



 Score =  125 bits (63), Expect = 2e-25
 Identities = 118/138 (85%)
 Strand = Plus / Minus

                                                                          
Query: 214    cttgcttcggccaggatgactttngtgcattttgcagctccatgcgcttcactgacaaat 273
              ||||||| ||||||||||||    ||||||||||||||||||| ||||| ||||||||||
Sbjct: 116567 cttgcttaggccaggatgacgaaagtgcattttgcagctccattcgcttaactgacaaat 116508

                                                                          
Query: 274    nacctaagccttctcgtnccnncacctcatgatgtttcttttcttctaaggttgacacca 333
               ||||||||||||||||     |||||||||||| ||||| |||||||| ||||| || |
Sbjct: 116507 cacctaagccttctcgtagtttcacctcatgatgcttcttgtcttctaatgttgatacta 116448

                                
Query: 334    atctgtccaaaaatcttt 351
              ||||||| ||||| ||||
Sbjct: 116447 atctgtctaaaaaccttt 116430



 Score =  107 bits (54), Expect = 5e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                          
Query: 555    acctcaagtaaatcatccagaatattatttctatattccttctccagcaactgacttctt 614
              ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 115856 acctcaagtaaatcatcaagaatattatttctatattccttctctagtaactggcttctt 115797

                                                
Query: 615    tcttcagttgaacattcatattgtcctgattcag 648
              ||||||| | ||| || | | |||||||||||||
Sbjct: 115796 tcttcagctaaactttgagactgtcctgattcag 115763

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>gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosome 16, complete
             sequence
          Length = 170842

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 27    ttacatattatttattttggtt 48
             ||||||||||||||||||||||
Sbjct: 57881 ttacatattatttattttggtt 57902

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>gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome 16, complete sequence
          Length = 213324

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 27    ttacatattatttattttggtt 48
             ||||||||||||||||||||||
Sbjct: 73423 ttacatattatttattttggtt 73402

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>gb|AC005868.1| Homo sapiens 12q24.2 PAC RPCI5-944M2 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 96180

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 573   agaatattatttctatattcct 594
             ||||||||||||||||||||||
Sbjct: 77945 agaatattatttctatattcct 77924

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>gb|AC110883.12| Mus musculus chromosome 8, clone RP23-200N24, complete sequence
          Length = 293104

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 575   aatattatttctatattcctt 595
             |||||||||||||||||||||
Sbjct: 24795 aatattatttctatattcctt 24815

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>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216194

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 452    atactgttggagaacaaaagg 472
              |||||||||||||||||||||
Sbjct: 156170 atactgttggagaacaaaagg 156150

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>emb|AL627283.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 19/20
          Length = 249050

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 590   ttccttctccagcaactgact 610
             |||||||||||||||||||||
Sbjct: 35651 ttccttctccagcaactgact 35631

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>emb|BX546452.9| Zebrafish DNA sequence from clone DKEYP-8B11 in linkage group 25,
            complete sequence
          Length = 170113

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 606  tgacttctttcttcagttgaacatt 630
            |||||| ||||||||||||||||||
Sbjct: 8000 tgacttttttcttcagttgaacatt 7976

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>gb|AF404306.1| Rhizophydium sp. 136 mitochondrion, complete genome
          Length = 68834

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 575  aatattatttctatattcctt 595
            |||||||||||||||||||||
Sbjct: 2754 aatattatttctatattcctt 2734

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>gb|AC100795.2| Homo sapiens chromosome 18, clone RP11-956K8, complete sequence
          Length = 193569

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     ttatttattttggttcaggga 54
              |||||||||||||||||||||
Sbjct: 193450 ttatttattttggttcaggga 193470

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>ref|XM_628278.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_920),
            partial mRNA
          Length = 3204

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 568  catccagaatattatttctatattc 592
            ||||||| |||||||||||||||||
Sbjct: 2665 catccagtatattatttctatattc 2641

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>gb|AC023263.4|AC023263 Homo sapiens, clone RP11-590E14, complete sequence
          Length = 174176

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    ttatttattttggttcaggga 54
             |||||||||||||||||||||
Sbjct: 40951 ttatttattttggttcaggga 40971

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>emb|BX072576.4| Zebrafish DNA sequence from clone DKEY-242E21 in linkage group 16,
              complete sequence
          Length = 161771

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 608    acttctttcttcagttgaaca 628
              |||||||||||||||||||||
Sbjct: 107100 acttctttcttcagttgaaca 107120

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>emb|BX004869.13| Zebrafish DNA sequence from clone CH211-69E21 in linkage group 17,
             complete sequence
          Length = 182325

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    caatcaatcatccagctaatt 87
             |||||||||||||||||||||
Sbjct: 80519 caatcaatcatccagctaatt 80539



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    caatcaatcatccagctaatt 87
             |||||||||||||||||||||
Sbjct: 80022 caatcaatcatccagctaatt 80042



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    caatcaatcatccagctaat 86
             ||||||||||||||||||||
Sbjct: 79786 caatcaatcatccagctaat 79805

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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 590     ttccttctccagcaactgact 610
               |||||||||||||||||||||
Sbjct: 4491237 ttccttctccagcaactgact 4491217

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>gb|AC099975.11| Mus musculus chromosome 5, clone RP23-23A2, complete sequence
          Length = 213359

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    tacatattatttattttggttcag 51
             ||||||||||||||||| ||||||
Sbjct: 52755 tacatattatttattttagttcag 52732

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>gb|AC166332.7| Mus musculus chromosome 1, clone RP24-266F18, complete sequence
          Length = 167566

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 597   tccagcaactgacttctttcttca 620
             ||||||||||| ||||||||||||
Sbjct: 22929 tccagcaactgccttctttcttca 22906

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>ref|XM_865548.1| PREDICTED: Bos taurus hypothetical protein LOC614166 (LOC614166),
            mRNA
          Length = 2924

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tgatgtttcttttcttctaa 322
            ||||||||||||||||||||
Sbjct: 1419 tgatgtttcttttcttctaa 1438

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>ref|XM_712407.1| Candida albicans SC5314 fumarate hydratase (CaO19_8178), mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 ggtcaagagttttctggtta 392
           ||||||||||||||||||||
Sbjct: 586 ggtcaagagttttctggtta 605

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>ref|XM_712313.1| Candida albicans SC5314 fumarate hydratase (CaO19_543), mRNA
          Length = 1389

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 ggtcaagagttttctggtta 392
           ||||||||||||||||||||
Sbjct: 586 ggtcaagagttttctggtta 605

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>gb|AC155230.2| Mus musculus BAC clone RP24-335J14 from chromosome 12, complete sequence
          Length = 135049

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     tattatttattttggttcag 51
              ||||||||||||||||||||
Sbjct: 110809 tattatttattttggttcag 110828

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>gb|BC059959.1| Xenopus laevis hypothetical protein MGC68494, mRNA (cDNA clone
            MGC:68494 IMAGE:4030479), complete cds
          Length = 4809

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 557  ctcaagtaaatcatccagaa 576
            ||||||||||||||||||||
Sbjct: 1059 ctcaagtaaatcatccagaa 1040

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>gb|AC004016.1| Homo sapiens BAC clone CTA-424N5 from 7, complete sequence
          Length = 111942

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  cctcatgatgtttcttttct 317
            ||||||||||||||||||||
Sbjct: 3345 cctcatgatgtttcttttct 3326

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>gb|AF266972.1| Coelia triptera isolate MWC324 chloroplast tRNA-Leu (trnL) gene and
           trnL-trnF intergenic spacer, partial sequence
          Length = 1128

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 agaatattatttctatattc 592
           ||||||||||||||||||||
Sbjct: 366 agaatattatttctatattc 385

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>ref|XM_754717.1| Ustilago maydis 521 hypothetical protein (UM03663.1) partial mRNA
          Length = 1749

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  gttgacaccaatctgtccaa 343
            ||||||||||||||||||||
Sbjct: 1047 gttgacaccaatctgtccaa 1028

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>gb|AC124405.4| Mus musculus BAC clone RP24-372I6 from chromosome 6, complete sequence
          Length = 153417

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   catgatgtttcttttcttct 320
             ||||||||||||||||||||
Sbjct: 10541 catgatgtttcttttcttct 10522

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>gb|AC127245.5| Mus musculus BAC clone RP24-422M4 from chromosome 6, complete sequence
          Length = 181475

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    caatcaatcatccagctaat 86
             ||||||||||||||||||||
Sbjct: 17054 caatcaatcatccagctaat 17035

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>gb|AC122251.4| Mus musculus BAC clone RP23-167J15 from chromosome 14, complete sequence
          Length = 204588

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 614    ttcttcagttgaacattcat 633
              ||||||||||||||||||||
Sbjct: 138753 ttcttcagttgaacattcat 138772

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>emb|CR762488.16| Zebrafish DNA sequence from clone DKEY-266J7 in linkage group 18,
             complete sequence
          Length = 154489

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 610   ttctttcttcagttgaacat 629
             ||||||||||||||||||||
Sbjct: 43849 ttctttcttcagttgaacat 43868

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>gb|AC146026.2| Pan troglodytes BAC clone RP43-120F17 from 7, complete sequence
          Length = 169511

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   cctcatgatgtttcttttct 317
             ||||||||||||||||||||
Sbjct: 42555 cctcatgatgtttcttttct 42574

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>emb|AL365190.16| Human DNA sequence from clone RP11-512H14 on chromosome 9 Contains the
             5' end of the TLE1 gene for transducin-like enhancer of
             split 1 (E(sp1) homolog, Drosophila) (ESG, GRG1), the 5'
             end of a novel gene and two CpG isalnds, complete sequence
          Length = 89468

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   atttctatattccttctcca 600
             ||||||||||||||||||||
Sbjct: 20566 atttctatattccttctcca 20547

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>emb|BX571866.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              8/17
          Length = 349652

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     atcaatcatccagctaattg 88
              ||||||||||||||||||||
Sbjct: 212958 atcaatcatccagctaattg 212977

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>emb|CR376845.7| Zebrafish DNA sequence from clone CH211-244C8 in linkage group 10,
              complete sequence
          Length = 166564

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 610    ttctttcttcagttgaacat 629
              ||||||||||||||||||||
Sbjct: 149075 ttctttcttcagttgaacat 149056

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>emb|BX927129.10| Zebrafish DNA sequence from clone DKEY-158N21 in linkage group 13,
             complete sequence
          Length = 154491

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   acttctttcttcagttgaac 627
             ||||||||||||||||||||
Sbjct: 52722 acttctttcttcagttgaac 52703

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>emb|BX928754.9| Zebrafish DNA sequence from clone DKEY-169I10 in linkage group 13,
              complete sequence
          Length = 263849

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    acttctttcttcagttgaac 627
              ||||||||||||||||||||
Sbjct: 231305 acttctttcttcagttgaac 231286

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>gb|AC112513.1| Oryza sativa chromosome 10 clone OSJNAa0029P06, complete sequence
          Length = 122319

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 31    atattatttattttggttcagggacgaa 58
             |||||| |||||| ||||||||||||||
Sbjct: 54896 atattagttatttcggttcagggacgaa 54869

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>gb|AC083803.8| Homo sapiens 3q BAC RP11-142C12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 142719

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    ttacatattatttattttgg 46
             ||||||||||||||||||||
Sbjct: 91512 ttacatattatttattttgg 91531

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>gb|AC090873.4| Oryza sativa chromosome 10 clone OSJNBa0029P06, complete sequence
          Length = 151533

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 31     atattatttattttggttcagggacgaa 58
              |||||| |||||| ||||||||||||||
Sbjct: 146429 atattagttatttcggttcagggacgaa 146402

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>emb|BX323878.10| Zebrafish DNA sequence from clone CH211-57E23 in linkage group 12,
             complete sequence
          Length = 190541

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 609   cttctttcttcagttgaaca 628
             ||||||||||||||||||||
Sbjct: 93468 cttctttcttcagttgaaca 93487

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>emb|BX119930.5| Zebrafish DNA sequence from clone DKEY-18G4 in linkage group 3, complete
              sequence
          Length = 186318

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     caatcaatcatccagctaat 86
              ||||||||||||||||||||
Sbjct: 134507 caatcaatcatccagctaat 134526

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>gb|AC156542.9| Mus musculus chromosome 1, clone RP23-370J16, complete sequence
          Length = 168193

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 597    tccagcaactgacttctttcttca 620
              ||||||||||| ||||||||||||
Sbjct: 162010 tccagcaactgccttctttcttca 161987

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>gb|AC159623.3| Mus musculus BAC clone RP24-308O7 from chromosome 12, complete sequence
          Length = 165043

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     tattatttattttggttcag 51
              ||||||||||||||||||||
Sbjct: 157745 tattatttattttggttcag 157726

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>gb|AC112679.15| Mus musculus chromosome 1, clone RP23-199H14, complete sequence
          Length = 185805

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 597    tccagcaactgacttctttcttca 620
              ||||||||||| ||||||||||||
Sbjct: 107672 tccagcaactgccttctttcttca 107649

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 31      atattatttattttggttcagggacgaa 58
               |||||| |||||| ||||||||||||||
Sbjct: 2489697 atattagttatttcggttcagggacgaa 2489670

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>gb|AC106011.3| Homo sapiens chromosome 8, clone RP11-466A10, complete sequence
          Length = 162791

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     tttacatattatttattttggttc 49
              |||| |||||||||||||||||||
Sbjct: 113786 tttaaatattatttattttggttc 113809

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>gb|AY939844.1| Cyanophage P-SSM2, complete genome
          Length = 252401

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 550    atttcacctcaagtaaatcatccagaat 577
              |||||| ||||||||||| |||||||||
Sbjct: 225458 atttcaactcaagtaaatgatccagaat 225485

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>ref|NM_001004923.1| Xenopus tropicalis MGC89101 protein (MGC89101), mRNA
          Length = 1781

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 557  ctcaagtaaatcatccagaa 576
            ||||||||||||||||||||
Sbjct: 1011 ctcaagtaaatcatccagaa 992

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>gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete sequence
          Length = 152747

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   gagcagagagattgctgagg 414
             ||||||||||||||||||||
Sbjct: 82173 gagcagagagattgctgagg 82192

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>emb|AL671889.6| Mouse DNA sequence from clone RP23-390M19 on chromosome X, complete
              sequence
          Length = 195748

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 582    tttctatattccttctccag 601
              ||||||||||||||||||||
Sbjct: 128107 tttctatattccttctccag 128126

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>gb|BC075380.1| Xenopus tropicalis MGC89101 protein, mRNA (cDNA clone MGC:89101
            IMAGE:7006487), complete cds
          Length = 1781

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 557  ctcaagtaaatcatccagaa 576
            ||||||||||||||||||||
Sbjct: 1011 ctcaagtaaatcatccagaa 992

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>emb|BX248090.11| Zebrafish DNA sequence from clone DKEY-156K12 in linkage group 20,
              complete sequence
          Length = 212314

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 610    ttctttcttcagttgaacat 629
              ||||||||||||||||||||
Sbjct: 147171 ttctttcttcagttgaacat 147152

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>emb|AL929171.9| Zebrafish DNA sequence from clone CH211-132P20 in linkage group 4,
              complete sequence
          Length = 176577

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    cttctttcttcagttgaaca 628
              ||||||||||||||||||||
Sbjct: 107358 cttctttcttcagttgaaca 107377

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>emb|CR381623.33| Zebrafish DNA sequence from clone DKEY-276G15 in linkage group 1,
             complete sequence
          Length = 159400

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 609   cttctttcttcagttgaaca 628
             ||||||||||||||||||||
Sbjct: 23749 cttctttcttcagttgaaca 23730

to top

>emb|AL133501.6|CNS01DV9 Human chromosome 14 DNA sequence BAC R-35B20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181838

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   gttagtgagcagagagattg 408
             ||||||||||||||||||||
Sbjct: 74452 gttagtgagcagagagattg 74471

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>emb|CR761377.2| Xenopus tropicalis finished cDNA, clone TEgg038p23
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 557 ctcaagtaaatcatccagaa 576
           ||||||||||||||||||||
Sbjct: 940 ctcaagtaaatcatccagaa 921

to top

>gb|AC116841.11| Mus musculus chromosome 18, clone RP24-390I10, complete sequence
          Length = 155933

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 572   cagaatattatttctatattcctt 595
             ||||||||||||||||| ||||||
Sbjct: 63488 cagaatattatttctatgttcctt 63511



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 572   cagaatattatttctatattcctt 595
             ||||||||||||||||| ||||||
Sbjct: 37815 cagaatattatttctatgttcctt 37838

to top

>emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in linkage group 7,
             complete sequence
          Length = 147943

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 610   ttctttcttcagttgaacat 629
             ||||||||||||||||||||
Sbjct: 99260 ttctttcttcagttgaacat 99241

to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 31      atattatttattttggttcagggacgaa 58
               |||||| |||||| ||||||||||||||
Sbjct: 2489648 atattagttatttcggttcagggacgaa 2489621

to top

>emb|AL929114.8| Zebrafish DNA sequence from clone CH211-133L11 in linkage group 1,
              complete sequence
          Length = 180158

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    cttctttcttcagttgaaca 628
              ||||||||||||||||||||
Sbjct: 120972 cttctttcttcagttgaaca 120991

to top

>emb|BX000429.7| Zebrafish DNA sequence from clone DKEY-77G18, complete sequence
          Length = 58683

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 610   ttctttcttcagttgaacat 629
             ||||||||||||||||||||
Sbjct: 36768 ttctttcttcagttgaacat 36749

to top

>gb|AC164122.5| Mus musculus BAC clone RP24-409O23 from chromosome 6, complete sequence
          Length = 165015

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    caatcaatcatccagctaat 86
             ||||||||||||||||||||
Sbjct: 69921 caatcaatcatccagctaat 69902

to top

>dbj|AP004910.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT12O09, TM0067b,
             complete sequence
          Length = 37710

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   cacctcatgatgtttctttt 315
             ||||||||||||||||||||
Sbjct: 27994 cacctcatgatgtttctttt 27975


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,276,943
Number of Sequences: 3902068
Number of extensions: 8276943
Number of successful extensions: 163631
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163286
Number of HSP's gapped (non-prelim): 341
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result