ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3h22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL138689.22| Human DNA sequence from clone RP11-272L14 on ch... 38 2.6
2emb|AJ319580.1|OLA319580 Oryzias latipes partial mRNA for cold-s... 38 2.6
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 2.6
4dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic D... 38 2.6
5dbj|AK100710.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 2.6

>emb|AL138689.22| Human DNA sequence from clone RP11-272L14 on chromosome 13 Contains the
             EFNB2 gene for ephrin-B2 (HTKL EPLG5 LERK5)and a CpG
             island, complete sequence
          Length = 103616

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 29    ctgagggccctttgacaagtaac 51
             ||||| |||||||||||||||||
Sbjct: 73665 ctgagtgccctttgacaagtaac 73643



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>emb|AJ319580.1|OLA319580 Oryzias latipes partial mRNA for cold-shock domain protein (mfYP2
           gene)
          Length = 1506

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tagagcccactgagggccc 38
           |||||||||||||||||||
Sbjct: 621 tagagcccactgagggccc 639



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 38      ctttgacaagtaacaacta 56
               |||||||||||||||||||
Sbjct: 8108918 ctttgacaagtaacaacta 8108936



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>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_C08
          Length = 117923

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    ctttgacaagtaacaacta 56
             |||||||||||||||||||
Sbjct: 42690 ctttgacaagtaacaacta 42708



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>dbj|AK100710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115F20, full
            insert sequence
          Length = 2120

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   ctttgacaagtaacaacta 56
            |||||||||||||||||||
Sbjct: 1122 ctttgacaagtaacaacta 1140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 369,338
Number of Sequences: 3902068
Number of extensions: 369338
Number of successful extensions: 26172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26157
Number of HSP's gapped (non-prelim): 15
length of query: 67
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 46
effective length of database: 17,151,101,840
effective search space: 788950684640
effective search space used: 788950684640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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