>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score =  142 bits (359), Expect = 4e-34
 Identities = 68/81 (83%), Positives = 74/81 (91%)
 Frame = -2

Query: 481 RGIXNFTNPGVVSHNEILEMYKEYINPDFKWTNFTLEEQAKVIVAPRSNNEMXASKLKSE 302
           +GI NFTNPGVVSHNEILEMY++YINP+FKW NFTLEEQAKVIVAPRSNNEM ASKLK E
Sbjct: 588 KGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKE 647

Query: 301 FPELLSIKESLIKNVFEPNRK 239
           FPELLSIKESLIK  + PN+K
Sbjct: 648 FPELLSIKESLIKYAYGPNKK 668

>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score =  139 bits (351), Expect = 3e-33
 Identities = 66/81 (81%), Positives = 72/81 (88%)
 Frame = -2

Query: 481 RGIXNFTNPGVVSHNEILEMYKEYINPDFKWTNFTLEEQAKVIVAPRSNNEMXASKLKSE 302
           RGI NFTNPGVVSHNEILEMYK YI PDFKW+NF LEEQAKVIVAPRSNNEM  +KL  E
Sbjct: 583 RGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKE 642

Query: 301 FPELLSIKESLIKNVFEPNRK 239
           FPE+LSIK+SLIK VFEPN++
Sbjct: 643 FPEMLSIKDSLIKYVFEPNKR 663

>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score =  136 bits (342), Expect = 3e-32
 Identities = 65/81 (80%), Positives = 71/81 (87%)
 Frame = -2

Query: 481 RGIXNFTNPGVVSHNEILEMYKEYINPDFKWTNFTLEEQAKVIVAPRSNNEMXASKLKSE 302
           RGI NFTNPGVVSHNEILEMYK YI P FKW+NFT+EEQAKVIVA RSNNEM  SKL  E
Sbjct: 586 RGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKE 645

Query: 301 FPELLSIKESLIKNVFEPNRK 239
           FPE+LSIKESL+K VFEPN++
Sbjct: 646 FPEMLSIKESLLKYVFEPNKR 666

>LPLB_BACSU (P39128) Protein lplB|
          Length = 318

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 191 FLIS*YISRWQLWPILLWYSSRHTYLRFFXTHYVSLEYYQMFYVVVDMF 45
           FLI  Y+    +W +L+ +     YL F+ + +V  +Y++ F++  D F
Sbjct: 42  FLIFKYLP---MWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFF 87

>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD|
            box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 373  EEQAKVIVAPRSNNEMXASKLKSEFPELLSIKESLIK--NVFEPNRK 239
            E + K+ +A  S NE+   K K+E   L  IKE LI+  N ++P  K
Sbjct: 982  EGERKIYLAIESANELAVQKAKAEITRL--IKEELIRLQNSYQPTNK 1026

>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD|
            box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 373  EEQAKVIVAPRSNNEMXASKLKSEFPELLSIKESLIK--NVFEPNRK 239
            E + K+ +A  S NE+   K K+E   L  IKE LI+  N ++P  K
Sbjct: 982  EGERKIYLAIESANELAVQKAKAEITRL--IKEELIRLQNSYQPTNK 1026

>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD|
            box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 373  EEQAKVIVAPRSNNEMXASKLKSEFPELLSIKESLIK--NVFEPNRK 239
            E + K+ +A  S NE+   K K+E   L  IKE LI+  N ++P  K
Sbjct: 982  EGERKIYLAIESANELAVQKAKAEITRL--IKEELIRLQNSYQPTNK 1026

>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD|
            box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 373  EEQAKVIVAPRSNNEMXASKLKSEFPELLSIKESLIK--NVFEPNRK 239
            E + K+ +A  S NE+   K K+E   L  IKE LI+  N ++P  K
Sbjct: 982  EGERKIYLAIESANELAVQKAKAEITRL--IKEELIRLQNSYQPTNK 1026

>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-) (DEAD|
            box protein 46)
          Length = 1018

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 373  EEQAKVIVAPRSNNEMXASKLKSEFPELLSIKESLIK--NVFEPNRK 239
            E + K+ +A  S NE+   K K+E   L  IKE LI+  N ++P  K
Sbjct: 968  EGERKIYLAIESANELAVQKAKAEITRL--IKEELIRLQNSYQPTSK 1012

>NU5M_MYXGL (Q9G2W8) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 601

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 203 C*KLFLIS*YISRWQLWPILLWYSSRHTYLRFFXTHYVSLEYYQMFYVVVDMFIGPGYLL 24
           C   F I+ YI+ W +    LWY   H    FF       +Y  MF + +  F+    LL
Sbjct: 84  CLTFFSIALYIT-WSIMQFSLWYMHEHNNTLFF-------KYLTMFLISMLFFLSANNLL 135

Query: 23  R 21
           +
Sbjct: 136 Q 136


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,089,842
Number of Sequences: 219361
Number of extensions: 1038810
Number of successful extensions: 2525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2524
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)