ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3h13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB032840.1| Hordeum vulgare HVA/68 mRNA for vacuolar proton-ATPase, complete cds Length = 2281 Score = 793 bits (400), Expect = 0.0 Identities = 430/440 (97%), Gaps = 2/440 (0%) Strand = Plus / Minus Query: 1 gacatcgtgcttattcn-ctatgaacatgtcc-ccggtgttcaatcttcttacaacaaat 58 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2214 gacatcgtgcttattccactatgaacatgtccaccggtgttcaatcttcttacaacaaat 2155 Query: 59 aatggtacacatggggaaaaataatggcttgcatcctggcgctggagaccaaataatgta 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2154 aatggtacacatggggaaaaataatggcttgcatcctggcgctggagaccaaataatgta 2095 Query: 119 aaatcctgaaaaaacaaggctgtctgtctgtcgcnnnnnnnggggatcctgaaacgtaat 178 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2094 aaatcctgaaaaaacaaggctgtctgtctgtcgcaaaaaaaggggatcctgaaacgtaat 2035 Query: 179 tcgcatctacacaaactctggtgaagcaaaagcaaattgctcgcaagtcgttcacagcat 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2034 tcgcatctacacaaactctggtgaagcaaaagcaaattgctcgcaagtcgttcacagcat 1975 Query: 239 ttggtgctccttattgtttacacggtggccatacacaacgtttcttctttcttttaccta 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1974 ttggtgctccttattgtttacacggtggccatacacaacgtttcttctttcttttaccta 1915 Query: 299 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1914 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 1855 Query: 359 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1854 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 1795 Query: 419 aatagatcacccatgcgact 438 |||||||||||||||||||| Sbjct: 1794 aatagatcacccatgcgact 1775
>gb|U36939.1|HVU36939 Hordeum vulgare vacuolar ATPase catalytic subunit mRNA, partial cds Length = 2089 Score = 777 bits (392), Expect = 0.0 Identities = 428/440 (97%), Gaps = 2/440 (0%) Strand = Plus / Minus Query: 1 gacatcgtgcttattcn-ctatgaacatgtcc-ccggtgttcaatcttcttacaacaaat 58 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2037 gacatcgtgcttattccactatgaacatgtccaccggtgttcaatcttcttacaacaaat 1978 Query: 59 aatggtacacatggggaaaaataatggcttgcatcctggcgctggagaccaaataatgta 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1977 aatggtacacatggggaaaaataatggcttgcatcctggcgctggagaccaaataatgta 1918 Query: 119 aaatcctgaaaaaacaaggctgtctgtctgtcgcnnnnnnnggggatcctgaaacgtaat 178 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1917 aaatcctgaaaaaacaaggctgtctgtctgtcgcaaaaaaaggggatcctgaaacgtaat 1858 Query: 179 tcgcatctacacaaactctggtgaagcaaaagcaaattgctcgcaagtcgttcacagcat 238 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1857 tcgcatctacacaaactccggtgaagcaaaagcaaattgctcgcaagtcgttcacagcat 1798 Query: 239 ttggtgctccttattgtttacacggtggccatacacaacgtttcttctttcttttaccta 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1797 ttggtgctccttattgtttacacggtggccatacacaacgtttcttctttcttttaccta 1738 Query: 299 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 358 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1737 gcctcgtcttctaggttgcggaacccggctgtaaggtcgtcgtataacttctggaatttc 1678 Query: 359 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1677 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 1618 Query: 419 aatagatcacccatgcgact 438 |||||||||||||||||||| Sbjct: 1617 aatagatcacccatgcgact 1598
>gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit A mRNA, complete cds Length = 2358 Score = 430 bits (217), Expect = e-117 Identities = 268/283 (94%), Gaps = 4/283 (1%) Strand = Plus / Minus Query: 160 ggggatcctgaaacgtaattcgcatctacacaaactctggtgaagcaaaa-gcaaattgc 218 |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 2112 gggggtcctgaaacgtaattcgcatctacacaaactccggtgaagcaaaaagcaaattgc 2053 Query: 219 tcgcaagtcgttcacagcatttggtgctccttattgtttacacggtggccatacacaacg 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2052 tcgcaagtcgttcacagcatttggtgctccttattgtttacacggtggccatacacaatg 1993 Query: 279 tttcttctttc---ttttacctagcctcgtcttctaggttgcggaacccggcggtaaggt 335 |||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 1992 tttcttctctccttttttacctagcctcgtcttctaggttgcggaacccggtggtgaggt 1933 Query: 336 cgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcga 395 ||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 1932 cgtcgtacaacttctggaattttgcgattaggacgtcttcgccttctgcggggtcttcga 1873 Query: 396 acttttgggatacaaggcggtaaaatagatcacccatgcgact 438 ||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1872 acttttgggatacaaggcggtaaaatagatcgcccatgcgact 1830 Score = 153 bits (77), Expect = 6e-34 Identities = 144/160 (90%), Gaps = 10/160 (6%) Strand = Plus / Minus Query: 1 gacatcgtgcttattcn--ctatgaacatgtcc-ccggtgttcaatcttctta--caaca 55 |||||||||||||||| |||||||||||||| |||||| ||| |||||||| ||||| Sbjct: 2293 gacatcgtgcttattcctcctatgaacatgtccaccggtgctcagtcttcttatacaaca 2234 Query: 56 aataatggtacacatggggaaaaa-taatggcttgcatcctggcgctggagaccaaataa 114 ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| || Sbjct: 2233 aataatggtacacatggtgaaaaaataatggcgtgcatcctggcgctggagaccaaacaa 2174 Query: 115 tgt-aaaatcct---gaaaaaacaaggctgtctgtctgtc 150 ||| |||||||| ||||||||||||||||||||||||| Sbjct: 2173 tgtaaaaatcctggggaaaaaacaaggctgtctgtctgtc 2134
>dbj|AK061925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C02, full insert sequence Length = 1001 Score = 109 bits (55), Expect = 8e-21 Identities = 118/139 (84%) Strand = Plus / Minus Query: 294 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 353 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 710 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 651 Query: 354 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggc 413 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct: 650 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttgagatactaggc 591 Query: 414 ggtaaaatagatcacccat 432 | ||||||||||||||||| Sbjct: 590 gataaaatagatcacccat 572
>dbj|AK069821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L13, full insert sequence Length = 2315 Score = 109 bits (55), Expect = 8e-21 Identities = 118/139 (84%) Strand = Plus / Minus Query: 294 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 353 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 2009 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 1950 Query: 354 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggc 413 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct: 1949 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttgagatactaggc 1890 Query: 414 ggtaaaatagatcacccat 432 | ||||||||||||||||| Sbjct: 1889 gataaaatagatcacccat 1871
>dbj|AK067063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089J10, full insert sequence Length = 2295 Score = 101 bits (51), Expect = 2e-18 Identities = 114/135 (84%) Strand = Plus / Minus Query: 302 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgcg 361 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 1955 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgca 1896 Query: 362 acaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaat 421 | | || |||| ||| |||||||| || ||||| ||||| || || |||||||| ||| Sbjct: 1895 atcaaaacttctttgccctctgcgggatcctcgaatttttgcgacactaggcggtagaat 1836 Query: 422 agatcacccatgcga 436 ||||| ||||||||| Sbjct: 1835 agatcgcccatgcga 1821
>gb|AY104754.1| Zea mays PCO134411 mRNA sequence Length = 2254 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 299 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 358 ||||| |||||||||||||||||||| | ||||||||||||||| | |||| || || Sbjct: 1956 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcgtacagtttcttaaacttg 1897 Query: 359 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 418 |||| | | |||||||||||||| || || ||||||||||||||||| ||||| ||| Sbjct: 1896 ccgaccaaagcttcttcgccttctgcaggatcctcgaacttttgggatactaggcgataa 1837 Query: 419 aatagatcaccca 431 |||||||| |||| Sbjct: 1836 aatagatccccca 1824
>gb|U36436.1|ZMU36436 Zea mays vacuolar ATPase 69 kDa subunit mRNA, partial cds Length = 2000 Score = 81.8 bits (41), Expect = 2e-12 Identities = 110/133 (82%) Strand = Plus / Minus Query: 299 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 358 ||||| |||||||||||||||||||| | ||||||||||||||| | |||| || || Sbjct: 1679 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcgtacagtttcttaaacttg 1620 Query: 359 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 418 |||| | | ||||| |||||||| || || ||||||||||||||||| ||||| ||| Sbjct: 1619 ccgaccaaagcttcttcaccttctgcaggatcctcgaacttttgggatactaggcgataa 1560 Query: 419 aatagatcaccca 431 |||||||| |||| Sbjct: 1559 aatagatccccca 1547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 302 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgc 360 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 4127190 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgc 4127132
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 302 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgc 360 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 37204 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgc 37146
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 294 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 353 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 26902973 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 26903032 Query: 354 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 402 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 26903033 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 26903081
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 294 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 353 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 26734 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 26793 Query: 354 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 402 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 26794 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 26842
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 73.8 bits (37), Expect = 4e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 294 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 353 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 157599 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 157658 Query: 354 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 402 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 157659 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 157707
>gb|BT024092.1| Zea mays clone EL01N0551D01 mRNA sequence Length = 2273 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Minus Query: 299 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 358 ||||| |||||||||||||||||||| | |||||||||||| || | |||| || || Sbjct: 1967 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcatacagtttcttaaacttg 1908 Query: 359 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 418 |||| | | |||||||||||||| || || || |||||||||||||| ||||| ||| Sbjct: 1907 ccgaccaaagcttcttcgccttctgcaggatcctcaaacttttgggatactaggcgataa 1848 Query: 419 aatagatcaccca 431 |||||||| |||| Sbjct: 1847 aatagatccccca 1835
>dbj|AB189964.1| Pyrus communis PcVHA-A2 mRNA for vacuolar H+-ATPase catalytic subunit, complete cds Length = 2322 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 371 tcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaatagatcaccc 430 ||||| |||||||| || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct: 1947 tcttccccttctgccggatcctcaaacttttgggacactaggcggtaaaagagatctccc 1888 Query: 431 a 431 | Sbjct: 1887 a 1887
>gb|AC097529.2| Homo sapiens BAC clone RP11-669F3 from 4, complete sequence Length = 54264 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 111 ataatgtaaaatcctgaaaaaa 132 |||||||||||||||||||||| Sbjct: 28728 ataatgtaaaatcctgaaaaaa 28707
>emb|AL589684.7| Human DNA sequence from clone RP11-437J19 on chromosome 6 Contains a novel gene, complete sequence Length = 94555 Score = 42.1 bits (21), Expect = 1.5 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 53 acaaataatggtacacatggggaaaaataatgg 85 ||||||||||||| |||||| |||||||||||| Sbjct: 50582 acaaataatggta-acatggagaaaaataatgg 50613
>gb|AF367445.1| Prunus persica clone AtpvA1 V-ATPase catalytic subunit A (atpvA1) mRNA, complete cds Length = 2336 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 371 tcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaatagatcaccc 430 ||||| |||||||| || || || || ||||| || |||||||||||||| ||||| ||| Sbjct: 1929 tcttccccttctgccggatcctcaaatttttgtgacacaaggcggtaaaagagatctccc 1870 Query: 431 a 431 | Sbjct: 1869 a 1869
>emb|AJ276326.1|MCR276326 Mesembryanthemum crystallinum mRNA for putative vacuolar ATP synthase subunit A (vatA gene) Length = 2396 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 338 tcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcgaac 397 ||||| |||||||||||||| ||||| || |||||| ||||| || ||||| ||||| Sbjct: 1980 tcgtacaacttctggaattttgcgacgagagtgtcttctccttcagcagggtcctcgaat 1921 Query: 398 ttttg 402 ||||| Sbjct: 1920 ttttg 1916
>gb|AC147771.1| Homo sapiens chromosome 16 clone PCR-16A03, complete sequence Length = 8715 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aacaaataatggtacacatg 71 |||||||||||||||||||| Sbjct: 4345 aacaaataatggtacacatg 4326
>gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, complete sequence Length = 191762 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 acatggggaaaaataatggc 86 |||||||||||||||||||| Sbjct: 108085 acatggggaaaaataatggc 108066
>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence Length = 167559 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ggtacacatggggaaaaata 81 |||||||||||||||||||| Sbjct: 135620 ggtacacatggggaaaaata 135601
>gb|AF098501.2| Caenorhabditis elegans fosmid H28G03, complete sequence Length = 44352 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gcttgcatcctggcgctgga 104 |||||||||||||||||||| Sbjct: 18371 gcttgcatcctggcgctgga 18352
>emb|X07160.1|GMHSP185 Soybean gene for heat shock protein Gmhsp18.5-C (class I) Length = 1833 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ctctggtgaagcaaaagcaaattg 217 ||||||| |||||||||||||||| Sbjct: 1377 ctctggttaagcaaaagcaaattg 1400
>emb|CR391627.1| Gallus gallus finished cDNA, clone ChEST893o3 Length = 1074 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 aaaacaaggctgtctgtctg 148 |||||||||||||||||||| Sbjct: 747 aaaacaaggctgtctgtctg 728
>ref|NM_171682.1| Caenorhabditis elegans H28G03.1b (H28G03.1) mRNA, complete cds Length = 948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gcttgcatcctggcgctgga 104 |||||||||||||||||||| Sbjct: 445 gcttgcatcctggcgctgga 426
>ref|NM_171950.3| Caenorhabditis elegans H28G03.1c (H28G03.1) mRNA, complete cds Length = 2116 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gcttgcatcctggcgctgga 104 |||||||||||||||||||| Sbjct: 534 gcttgcatcctggcgctgga 515
>ref|NM_171681.2| Caenorhabditis elegans H28G03.1a (H28G03.1) mRNA, complete cds Length = 1046 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gcttgcatcctggcgctgga 104 |||||||||||||||||||| Sbjct: 543 gcttgcatcctggcgctgga 524
>dbj|AB189963.1| Pyrus communis PcVHA-A1 mRNA for vacuolar H+-ATPase catalytic subunit, complete cds Length = 2236 Score = 40.1 bits (20), Expect = 5.9 Identities = 80/100 (80%) Strand = Plus / Minus Query: 332 aggtcgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtct 391 ||||| ||||||| ||||| ||||| || ||||| | ||||| ||||| || || || Sbjct: 1901 aggtcctcgtatagcttcttaaattttgccacaagagcttcttccccttcagccggatcc 1842 Query: 392 tcgaacttttgggatacaaggcggtaaaatagatcaccca 431 || |||||||| || || ||||||||||| ||||| |||| Sbjct: 1841 tcaaacttttgagacactaggcggtaaaagagatctccca 1802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,381,754 Number of Sequences: 3902068 Number of extensions: 4381754 Number of successful extensions: 99122 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 98992 Number of HSP's gapped (non-prelim): 119 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
