| Clone Name | rbags3h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY036609.1| Triticum aestivum serine/threonine protein kinase mRNA, complete cds Length = 1805 Score = 121 bits (61), Expect = 5e-25 Identities = 99/115 (86%) Strand = Plus / Minus Query: 1 tttctgcttctgtatcaaaagtattaatataannaatacatgggatttaacttctctcca 60 |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 1594 tttctgcttctgtatcaaaagtattaatatgataaatacatgggatttaacttctctcca 1535 Query: 61 aattgcnnnnnnnncttttgaattctgcctgccttagtctaaggtcatgggttgg 115 ||||| || || ||||||||||| |||||||||||||||||||||| Sbjct: 1534 gattgctttctcttctcctggattctgcctgctttagtctaaggtcatgggttgg 1480
>gb|AC129623.4| Homo sapiens 12 BAC CTD-2107C6 (Cal Tech Human BAC Library D) complete sequence Length = 133581 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tacatgggatttaacttctc 56 |||||||||||||||||||| Sbjct: 96939 tacatgggatttaacttctc 96958
>gb|AC133796.2| Homo sapiens 3 BAC RP11-10I2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125170 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tatcaaaagtattaatataa 32 |||||||||||||||||||| Sbjct: 82418 tatcaaaagtattaatataa 82399
>gb|AC074237.4| Homo sapiens chromosome 18, clone RP11-333K18, complete sequence Length = 181390 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tacatgggatttaacttctc 56 |||||||||||||||||||| Sbjct: 71251 tacatgggatttaacttctc 71270
>emb|AL391397.4|CNS06C87 Human chromosome 14 DNA sequence BAC R-625F13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165622 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 tgcttctgtatcaaaagtat 24 |||||||||||||||||||| Sbjct: 64611 tgcttctgtatcaaaagtat 64630
>gb|AC169509.1| Mus musculus BAC clone RP23-137L8 from chromosome 16, complete sequence Length = 206061 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 cttctgtatcaaaagtatt 25 ||||||||||||||||||| Sbjct: 12696 cttctgtatcaaaagtatt 12714
>gb|AF196779.2| Homo sapiens chromosome X multiple clones map p11.23, complete sequence Length = 176767 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 tttaacttctctccaaatt 64 ||||||||||||||||||| Sbjct: 14210 tttaacttctctccaaatt 14192
>gb|AC116484.12| Mus musculus chromosome 16, clone RP23-425F12, complete sequence Length = 206793 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 cttctgtatcaaaagtatt 25 ||||||||||||||||||| Sbjct: 25787 cttctgtatcaaaagtatt 25769
>gb|AC154548.3| Mus musculus BAC clone RP23-437N23 from chromosome 13, complete sequence Length = 173722 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 tctgcttctgtatcaaaag 21 ||||||||||||||||||| Sbjct: 50954 tctgcttctgtatcaaaag 50972
>emb|AL603845.11| Mouse DNA sequence from clone RP23-145C12 on chromosome 11 Contains a ribosomal protein L7a (Rpl7a) pseudogene and the 3' end of the gene for a novel protein similar to Tensin Tns, complete sequence Length = 223491 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 tgaattctgcctgccttag 97 ||||||||||||||||||| Sbjct: 192198 tgaattctgcctgccttag 192180
>gb|AC116605.1| Homo sapiens chromosome 5 clone RP11-443O6, complete sequence Length = 164774 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 tctgtatcaaaagtattaa 27 ||||||||||||||||||| Sbjct: 106336 tctgtatcaaaagtattaa 106318
>gb|AC106762.2| Homo sapiens chromosome 5 clone RP11-218A1, complete sequence Length = 72568 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 tctgtatcaaaagtattaa 27 ||||||||||||||||||| Sbjct: 69835 tctgtatcaaaagtattaa 69817
>gb|AC106811.2| Homo sapiens chromosome 5 clone RP11-551B15, complete sequence Length = 148362 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 tctgtatcaaaagtattaa 27 ||||||||||||||||||| Sbjct: 29435 tctgtatcaaaagtattaa 29417
>dbj|AK141354.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430037J11 product:unclassifiable, full insert sequence Length = 3113 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 tttaacttctctccaaatt 64 ||||||||||||||||||| Sbjct: 1397 tttaacttctctccaaatt 1379
>gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosome 16, complete sequence Length = 226870 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 tttaacttctctccaaatt 64 ||||||||||||||||||| Sbjct: 147542 tttaacttctctccaaatt 147560
>gb|AC022404.7|AC022404 Homo sapiens chromosome 14 clone CTD-2308C24 and RP11-757H14 map 14q31, complete sequence Length = 232309 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 ctgtatcaaaagtattaatataa 32 ||||||||||| ||||||||||| Sbjct: 116306 ctgtatcaaaattattaatataa 116328
>gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, complete sequence Length = 200615 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 tttaacttctctccaaatt 64 ||||||||||||||||||| Sbjct: 183172 tttaacttctctccaaatt 183190 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,208,189 Number of Sequences: 3902068 Number of extensions: 1208189 Number of successful extensions: 75461 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75434 Number of HSP's gapped (non-prelim): 27 length of query: 115 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 94 effective length of database: 17,151,101,840 effective search space: 1612203572960 effective search space used: 1612203572960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)