| Clone Name | rbags3h01 |
|---|---|
| Clone Library Name | barley_pub |
>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein) Length = 1104 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = -2 Query: 531 LKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKISRFEQKELLM 388 L A+ A+ E++ I+ ++ +V+ QMK+++ K+ FE+ E +M Sbjct: 873 LASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIM 920
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = -2 Query: 531 LKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKISRFEQKELLM 388 L A+ A+ E++ I+ ++ +V+ QMK+++ K+ FE+ E +M Sbjct: 866 LAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIM 913
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = -2 Query: 531 LKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKISRFEQKELLM 388 L A+ A+ E++ I+ ++ +V+ QMK+++ K+ FE+ E +M Sbjct: 866 LAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIM 913
>CCD50_CHICK (Q5ZM86) Coiled-coil domain-containing protein 50| Length = 301 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -2 Query: 534 LLKEASANAQVQLQKEQKDIEQSLSAIV-DVQMKEIQDKISRFEQKE 397 L +E A+ Q+QK QKD+E+ S I ++Q+K + + R Q+E Sbjct: 62 LQEEEDLKARAQIQKRQKDLERQDSEIAQEIQVKLVFEAEQRRRQEE 108
>CCD50_HUMAN (Q8IVM0) Coiled-coil domain-containing protein 50 (Protein Ymer)| Length = 306 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = -2 Query: 546 QTPDLLKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKIS 415 Q L+E AQ QLQK KD+EQ I +EIQ+K++ Sbjct: 57 QVAKQLQEEDLKAQAQLQKRYKDLEQQDCEIA----QEIQEKLA 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,061,182 Number of Sequences: 219361 Number of extensions: 1085316 Number of successful extensions: 2955 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2908 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2955 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)