ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dep... 31 2.1
2SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep... 31 2.8
3SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dep... 31 2.8
4CCD50_CHICK (Q5ZM86) Coiled-coil domain-containing protein 50 30 3.6
5CCD50_HUMAN (Q8IVM0) Coiled-coil domain-containing protein 50 (P... 30 3.6

>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 1 (SWI/SNF complex 155
            kDa subunit) (BRG1-associated factor 155) (SWI3-related
            protein)
          Length = 1104

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -2

Query: 531  LKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKISRFEQKELLM 388
            L  A+  A+     E++ I+  ++ +V+ QMK+++ K+  FE+ E +M
Sbjct: 873  LASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIM 920



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>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -2

Query: 531  LKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKISRFEQKELLM 388
            L  A+  A+     E++ I+  ++ +V+ QMK+++ K+  FE+ E +M
Sbjct: 866  LAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIM 913



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>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/48 (29%), Positives = 29/48 (60%)
 Frame = -2

Query: 531  LKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKISRFEQKELLM 388
            L  A+  A+     E++ I+  ++ +V+ QMK+++ K+  FE+ E +M
Sbjct: 866  LAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIM 913



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>CCD50_CHICK (Q5ZM86) Coiled-coil domain-containing protein 50|
          Length = 301

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 534 LLKEASANAQVQLQKEQKDIEQSLSAIV-DVQMKEIQDKISRFEQKE 397
           L +E    A+ Q+QK QKD+E+  S I  ++Q+K + +   R  Q+E
Sbjct: 62  LQEEEDLKARAQIQKRQKDLERQDSEIAQEIQVKLVFEAEQRRRQEE 108



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>CCD50_HUMAN (Q8IVM0) Coiled-coil domain-containing protein 50 (Protein Ymer)|
          Length = 306

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -2

Query: 546 QTPDLLKEASANAQVQLQKEQKDIEQSLSAIVDVQMKEIQDKIS 415
           Q    L+E    AQ QLQK  KD+EQ    I     +EIQ+K++
Sbjct: 57  QVAKQLQEEDLKAQAQLQKRYKDLEQQDCEIA----QEIQEKLA 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,061,182
Number of Sequences: 219361
Number of extensions: 1085316
Number of successful extensions: 2955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2955
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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