ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags3g13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB032840.1| Hordeum vulgare HVA/68 mRNA for vacuolar proton-ATPase, complete cds Length = 2281 Score = 1009 bits (509), Expect = 0.0 Identities = 542/553 (98%), Gaps = 2/553 (0%) Strand = Plus / Minus Query: 1 atatgaatatagacattattgatgtt-aagtagatggacatcgtgcttattcn-ctatga 58 |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 2250 atatgaatatagacattattgatgttcaagtagatggacatcgtgcttattccactatga 2191 Query: 59 acatgtccaccggtgttcaatcttcttacaacaaataatggtacacatggggaaaaataa 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2190 acatgtccaccggtgttcaatcttcttacaacaaataatggtacacatggggaaaaataa 2131 Query: 119 tggcttgcatcctggcgctggagaccaaataatgtaaaatcctgaaaaaacaaggctgtc 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2130 tggcttgcatcctggcgctggagaccaaataatgtaaaatcctgaaaaaacaaggctgtc 2071 Query: 179 tgtctgtcgcnnnnnnnggggatcctgaaacgtaattcgcatctacacaaactctggtga 238 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2070 tgtctgtcgcaaaaaaaggggatcctgaaacgtaattcgcatctacacaaactctggtga 2011 Query: 239 agcaaaagcaaattgctcgcaagtcgttcacagcatttggtgctccttattgtttacacg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2010 agcaaaagcaaattgctcgcaagtcgttcacagcatttggtgctccttattgtttacacg 1951 Query: 299 gtggccatacacaacgtttcttctttcttttacctagcctcgtcttctaggttgcggaac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1950 gtggccatacacaacgtttcttctttcttttacctagcctcgtcttctaggttgcggaac 1891 Query: 359 ccggcggtaaggtcgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttct 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1890 ccggcggtaaggtcgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttct 1831 Query: 419 gcggggtcttcgaacttttgggatacaaggcggtaaaatagatcacccatgcgactcttt 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1830 gcggggtcttcgaacttttgggatacaaggcggtaaaatagatcacccatgcgactcttt 1771 Query: 479 acgacggcgtaggttatcttgtgtccatcagcattagctgctcgctccacagcctgattc 538 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1770 acgacggcgtaggttatcttgtgtccatcagcattggctgctcgctccacagcctgattc 1711 Query: 539 gctaattgattga 551 ||||||||||||| Sbjct: 1710 gctaattgattga 1698
>gb|U36939.1|HVU36939 Hordeum vulgare vacuolar ATPase catalytic subunit mRNA, partial cds Length = 2089 Score = 993 bits (501), Expect = 0.0 Identities = 540/553 (97%), Gaps = 2/553 (0%) Strand = Plus / Minus Query: 1 atatgaatatagacattattgatgtt-aagtagatggacatcgtgcttattcn-ctatga 58 |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 2073 atatgaatatagacattattgatgttcaagtagatggacatcgtgcttattccactatga 2014 Query: 59 acatgtccaccggtgttcaatcttcttacaacaaataatggtacacatggggaaaaataa 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2013 acatgtccaccggtgttcaatcttcttacaacaaataatggtacacatggggaaaaataa 1954 Query: 119 tggcttgcatcctggcgctggagaccaaataatgtaaaatcctgaaaaaacaaggctgtc 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1953 tggcttgcatcctggcgctggagaccaaataatgtaaaatcctgaaaaaacaaggctgtc 1894 Query: 179 tgtctgtcgcnnnnnnnggggatcctgaaacgtaattcgcatctacacaaactctggtga 238 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1893 tgtctgtcgcaaaaaaaggggatcctgaaacgtaattcgcatctacacaaactccggtga 1834 Query: 239 agcaaaagcaaattgctcgcaagtcgttcacagcatttggtgctccttattgtttacacg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1833 agcaaaagcaaattgctcgcaagtcgttcacagcatttggtgctccttattgtttacacg 1774 Query: 299 gtggccatacacaacgtttcttctttcttttacctagcctcgtcttctaggttgcggaac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1773 gtggccatacacaacgtttcttctttcttttacctagcctcgtcttctaggttgcggaac 1714 Query: 359 ccggcggtaaggtcgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttct 418 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1713 ccggctgtaaggtcgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttct 1654 Query: 419 gcggggtcttcgaacttttgggatacaaggcggtaaaatagatcacccatgcgactcttt 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1653 gcggggtcttcgaacttttgggatacaaggcggtaaaatagatcacccatgcgactcttt 1594 Query: 479 acgacggcgtaggttatcttgtgtccatcagcattagctgctcgctccacagcctgattc 538 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1593 acgacggcgtaggttatcttgtgtccatcagcattggctgctcgctccacagcctgattc 1534 Query: 539 gctaattgattga 551 ||||||||||||| Sbjct: 1533 gctaattgattga 1521
>gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit A mRNA, complete cds Length = 2358 Score = 553 bits (279), Expect = e-154 Identities = 336/353 (95%), Gaps = 4/353 (1%) Strand = Plus / Minus Query: 196 ggggatcctgaaacgtaattcgcatctacacaaactctggtgaagcaaaa-gcaaattgc 254 |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 2112 gggggtcctgaaacgtaattcgcatctacacaaactccggtgaagcaaaaagcaaattgc 2053 Query: 255 tcgcaagtcgttcacagcatttggtgctccttattgtttacacggtggccatacacaacg 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2052 tcgcaagtcgttcacagcatttggtgctccttattgtttacacggtggccatacacaatg 1993 Query: 315 tttcttctttc---ttttacctagcctcgtcttctaggttgcggaacccggcggtaaggt 371 |||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 1992 tttcttctctccttttttacctagcctcgtcttctaggttgcggaacccggtggtgaggt 1933 Query: 372 cgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcga 431 ||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 1932 cgtcgtacaacttctggaattttgcgattaggacgtcttcgccttctgcggggtcttcga 1873 Query: 432 acttttgggatacaaggcggtaaaatagatcacccatgcgactctttacgacggcgtagg 491 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1872 acttttgggatacaaggcggtaaaatagatcgcccatgcgactctttacgacggcgtagg 1813 Query: 492 ttatcttgtgtccatcagcattagctgctcgctccacagcctgattcgctaat 544 |||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 1812 ttatcttgtgtccatcagcattggctgctcgctccacggcctgattcgctaat 1760 Score = 216 bits (109), Expect = 6e-53 Identities = 179/196 (91%), Gaps = 10/196 (5%) Strand = Plus / Minus Query: 1 atatgaatatagacattattgatgtt-aagtagatggacatcgtgcttattcn--ctatg 57 |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 2329 atataaatatagacattattgatgttcaagtagatggacatcgtgcttattcctcctatg 2270 Query: 58 aacatgtccaccggtgttcaatcttctta--caacaaataatggtacacatggggaaaaa 115 |||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||| Sbjct: 2269 aacatgtccaccggtgctcagtcttcttatacaacaaataatggtacacatggtgaaaaa 2210 Query: 116 -taatggcttgcatcctggcgctggagaccaaataatgt-aaaatcct---gaaaaaaca 170 ||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct: 2209 ataatggcgtgcatcctggcgctggagaccaaacaatgtaaaaatcctggggaaaaaaca 2150 Query: 171 aggctgtctgtctgtc 186 |||||||||||||||| Sbjct: 2149 aggctgtctgtctgtc 2134
>dbj|AK061925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C02, full insert sequence Length = 1001 Score = 165 bits (83), Expect = 2e-37 Identities = 182/215 (84%) Strand = Plus / Minus Query: 330 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 389 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 710 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 651 Query: 390 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggc 449 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct: 650 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttgagatactaggc 591 Query: 450 ggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtccatcag 509 | ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||||||| Sbjct: 590 gataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtccatcag 531 Query: 510 cattagctgctcgctccacagcctgattcgctaat 544 |||||||||| ||||||||||||||||| |||||| Sbjct: 530 cattagctgcacgctccacagcctgatttgctaat 496 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 aagtagatggacatcgtgcttattc 51 |||||||||| |||||||||||||| Sbjct: 994 aagtagatggtcatcgtgcttattc 970
>dbj|AK069821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L13, full insert sequence Length = 2315 Score = 165 bits (83), Expect = 2e-37 Identities = 182/215 (84%) Strand = Plus / Minus Query: 330 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 389 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 2009 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 1950 Query: 390 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggc 449 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct: 1949 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttgagatactaggc 1890 Query: 450 ggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtccatcag 509 | ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||||||| Sbjct: 1889 gataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtccatcag 1830 Query: 510 cattagctgctcgctccacagcctgattcgctaat 544 |||||||||| ||||||||||||||||| |||||| Sbjct: 1829 cattagctgcacgctccacagcctgatttgctaat 1795 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 aagtagatggacatcgtgcttattc 51 |||||||||| |||||||||||||| Sbjct: 2293 aagtagatggtcatcgtgcttattc 2269
>dbj|AK067063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089J10, full insert sequence Length = 2295 Score = 121 bits (61), Expect = 3e-24 Identities = 163/197 (82%) Strand = Plus / Minus Query: 338 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgcg 397 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 1955 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgca 1896 Query: 398 acaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaat 457 | | || |||| ||| |||||||| || ||||| ||||| || || |||||||| ||| Sbjct: 1895 atcaaaacttctttgccctctgcgggatcctcgaatttttgcgacactaggcggtagaat 1836 Query: 458 agatcacccatgcgactctttacgacggcgtaggttatcttgtgtccatcagcattagct 517 ||||| ||||||||| ||||| ||| ||| || ||||| |||||||||||| |||| Sbjct: 1835 agatcgcccatgcgatgctttatgacactgtatgtaatcttctgtccatcagcaccagct 1776 Query: 518 gctcgctccacagcctg 534 || |||||||| ||||| Sbjct: 1775 gcccgctccaccgcctg 1759
>gb|AY104754.1| Zea mays PCO134411 mRNA sequence Length = 2254 Score = 101 bits (51), Expect = 2e-18 Identities = 165/203 (81%) Strand = Plus / Minus Query: 335 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 394 ||||| |||||||||||||||||||| | ||||||||||||||| | |||| || || Sbjct: 1956 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcgtacagtttcttaaacttg 1897 Query: 395 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 454 |||| | | |||||||||||||| || || ||||||||||||||||| ||||| ||| Sbjct: 1896 ccgaccaaagcttcttcgccttctgcaggatcctcgaacttttgggatactaggcgataa 1837 Query: 455 aatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtccatcagcatta 514 |||||||| |||| ||| ||||| ||| ||| |||||||| || || |||| | | Sbjct: 1836 aatagatcccccaaccgatgctttatgacactgtatgttatcttatggccgtcagtacca 1777 Query: 515 gctgctcgctccacagcctgatt 537 ||||| ||||||||||||||||| Sbjct: 1776 gctgcccgctccacagcctgatt 1754
>gb|U36436.1|ZMU36436 Zea mays vacuolar ATPase 69 kDa subunit mRNA, partial cds Length = 2000 Score = 93.7 bits (47), Expect = 6e-16 Identities = 164/203 (80%) Strand = Plus / Minus Query: 335 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 394 ||||| |||||||||||||||||||| | ||||||||||||||| | |||| || || Sbjct: 1679 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcgtacagtttcttaaacttg 1620 Query: 395 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 454 |||| | | ||||| |||||||| || || ||||||||||||||||| ||||| ||| Sbjct: 1619 ccgaccaaagcttcttcaccttctgcaggatcctcgaacttttgggatactaggcgataa 1560 Query: 455 aatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtccatcagcatta 514 |||||||| |||| ||| ||||| ||| ||| |||||||| || || |||| | | Sbjct: 1559 aatagatcccccaaccgatgctttatgacactgtatgttatcttatggccgtcagtacca 1500 Query: 515 gctgctcgctccacagcctgatt 537 ||||| ||||||||||||||||| Sbjct: 1499 gctgcccgctccacagcctgatt 1477
>gb|BT024092.1| Zea mays clone EL01N0551D01 mRNA sequence Length = 2273 Score = 85.7 bits (43), Expect = 1e-13 Identities = 163/203 (80%) Strand = Plus / Minus Query: 335 gcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttc 394 ||||| |||||||||||||||||||| | |||||||||||| || | |||| || || Sbjct: 1967 gcctcatcttctaggttgcggaacccagtggtaaggtcgtcatacagtttcttaaacttg 1908 Query: 395 gcgacaaggacgtcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaa 454 |||| | | |||||||||||||| || || || |||||||||||||| ||||| ||| Sbjct: 1907 ccgaccaaagcttcttcgccttctgcaggatcctcaaacttttgggatactaggcgataa 1848 Query: 455 aatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtccatcagcatta 514 |||||||| |||| ||| ||||| ||| ||| |||||||| || || |||| | | Sbjct: 1847 aatagatcccccaaccgatgctttatgacactgtatgttatcttatggccgtcagtacca 1788 Query: 515 gctgctcgctccacagcctgatt 537 ||||| ||||||||||||||||| Sbjct: 1787 gctgcccgctccacagcctgatt 1765
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 79.8 bits (40), Expect = 9e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 446 aggcggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtcca 505 ||||| ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||| Sbjct: 26903185 aggcgataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtcca 26903244 Query: 506 tcagcattagctgctcgctccacagcct 533 |||||||||||||| ||||||||||||| Sbjct: 26903245 tcagcattagctgcacgctccacagcct 26903272 Score = 73.8 bits (37), Expect = 5e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 330 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 389 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 26902973 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 26903032 Query: 390 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 438 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 26903033 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 26903081 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 aagtagatggacatcgtgcttattc 51 |||||||||| |||||||||||||| Sbjct: 26902689 aagtagatggtcatcgtgcttattc 26902713
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 79.8 bits (40), Expect = 9e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 446 aggcggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtcca 505 ||||| ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||| Sbjct: 26946 aggcgataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtcca 27005 Query: 506 tcagcattagctgctcgctccacagcct 533 |||||||||||||| ||||||||||||| Sbjct: 27006 tcagcattagctgcacgctccacagcct 27033 Score = 73.8 bits (37), Expect = 5e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 330 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 389 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 26734 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 26793 Query: 390 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 438 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 26794 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 26842 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 aagtagatggacatcgtgcttattc 51 |||||||||| |||||||||||||| Sbjct: 26450 aagtagatggtcatcgtgcttattc 26474
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 79.8 bits (40), Expect = 9e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 446 aggcggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtcca 505 ||||| ||||||||||||||||| ||| ||||| ||| ||| ||||| || |||||| Sbjct: 157811 aggcgataaaatagatcacccatacgatgctttatgacactgtatgttattttttgtcca 157870 Query: 506 tcagcattagctgctcgctccacagcct 533 |||||||||||||| ||||||||||||| Sbjct: 157871 tcagcattagctgcacgctccacagcct 157898 Score = 73.8 bits (37), Expect = 5e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 330 acctagcctcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctgga 389 ||||||| || ||||||||||||||||| |||| || ||||| || || || ||||||| Sbjct: 157599 acctagcttcatcttctaggttgcggaatccggttgtgaggtcatcatacaatttctgga 157658 Query: 390 atttcgcgacaaggacgtcttcgccttctgcggggtcttcgaacttttg 438 |||| ||||| ||||| ||||| || ||||| ||||| || |||||||| Sbjct: 157659 attttgcgactaggacatcttcaccctctgcagggtcctcaaacttttg 157707 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 aagtagatggacatcgtgcttattc 51 |||||||||| |||||||||||||| Sbjct: 157315 aagtagatggtcatcgtgcttattc 157339
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 338 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgc 396 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 4127190 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgc 4127132 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 446 aggcggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtcca 505 |||||||| |||||||| ||||||||| ||||| ||| ||| || ||||| |||||| Sbjct: 4126997 aggcggtagaatagatcgcccatgcgatgctttatgacactgtatgtaatcttctgtcca 4126938 Query: 506 tcagcattagctgctcgctccacagcct 533 |||||| |||||| |||||||| |||| Sbjct: 4126937 tcagcaccagctgcccgctccaccgcct 4126910
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 338 tcgtcttctaggttgcggaacccggcggtaaggtcgtcgtataacttctggaatttcgc 396 ||||||||||| ||||||||||||||||||||||| ||||| | |||||| |||||||| Sbjct: 37204 tcgtcttctagattgcggaacccggcggtaaggtcatcgtacagcttctgaaatttcgc 37146 Score = 56.0 bits (28), Expect = 1e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 446 aggcggtaaaatagatcacccatgcgactctttacgacggcgtaggttatcttgtgtcca 505 |||||||| |||||||| ||||||||| ||||| ||| ||| || ||||| |||||| Sbjct: 37011 aggcggtagaatagatcgcccatgcgatgctttatgacactgtatgtaatcttctgtcca 36952 Query: 506 tcagcattagctgctcgctccacagcct 533 |||||| |||||| |||||||| |||| Sbjct: 36951 tcagcaccagctgcccgctccaccgcct 36924
>dbj|AB189964.1| Pyrus communis PcVHA-A2 mRNA for vacuolar H+-ATPase catalytic subunit, complete cds Length = 2322 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 407 tcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaatagatcaccc 466 ||||| |||||||| || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct: 1947 tcttccccttctgccggatcctcaaacttttgggacactaggcggtaaaagagatctccc 1888 Query: 467 a 467 | Sbjct: 1887 a 1887
>gb|AC097529.2| Homo sapiens BAC clone RP11-669F3 from 4, complete sequence Length = 54264 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 147 ataatgtaaaatcctgaaaaaa 168 |||||||||||||||||||||| Sbjct: 28728 ataatgtaaaatcctgaaaaaa 28707
>emb|AL589684.7| Human DNA sequence from clone RP11-437J19 on chromosome 6 Contains a novel gene, complete sequence Length = 94555 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 89 acaaataatggtacacatggggaaaaataatgg 121 ||||||||||||| |||||| |||||||||||| Sbjct: 50582 acaaataatggta-acatggagaaaaataatgg 50613
>emb|AL121583.25|HSBA358N2 Human DNA sequence from clone RP11-358N2 on chromosome 20 Contains the 5' end of the ASXL1 gene for additional sex combs like 1 (Drosophila) and a CpG island, complete sequence Length = 84710 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 atatagacattattgatgtta 27 ||||||||||||||||||||| Sbjct: 53839 atatagacattattgatgtta 53859
>gb|AF367445.1| Prunus persica clone AtpvA1 V-ATPase catalytic subunit A (atpvA1) mRNA, complete cds Length = 2336 Score = 42.1 bits (21), Expect = 1.9 Identities = 51/61 (83%) Strand = Plus / Minus Query: 407 tcttcgccttctgcggggtcttcgaacttttgggatacaaggcggtaaaatagatcaccc 466 ||||| |||||||| || || || || ||||| || |||||||||||||| ||||| ||| Sbjct: 1929 tcttccccttctgccggatcctcaaatttttgtgacacaaggcggtaaaagagatctccc 1870 Query: 467 a 467 | Sbjct: 1869 a 1869
>emb|AJ276326.1|MCR276326 Mesembryanthemum crystallinum mRNA for putative vacuolar ATP synthase subunit A (vatA gene) Length = 2396 Score = 42.1 bits (21), Expect = 1.9 Identities = 54/65 (83%) Strand = Plus / Minus Query: 374 tcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtcttcgaac 433 ||||| |||||||||||||| ||||| || |||||| ||||| || ||||| ||||| Sbjct: 1980 tcgtacaacttctggaattttgcgacgagagtgtcttctccttcagcagggtcctcgaat 1921 Query: 434 ttttg 438 ||||| Sbjct: 1920 ttttg 1916
>gb|J03769.1|DARVHATPA Daucus carota 70kD vacuolar H+-ATPase mRNA, complete cds Length = 2397 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 514 agctgctcgctccacagcctgatt 537 |||| ||||||||||||||||||| Sbjct: 1839 agctcctcgctccacagcctgatt 1816
>gb|AC147771.1| Homo sapiens chromosome 16 clone PCR-16A03, complete sequence Length = 8715 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 aacaaataatggtacacatg 107 |||||||||||||||||||| Sbjct: 4345 aacaaataatggtacacatg 4326
>gb|AC107770.10| Mus musculus chromosome 5, clone RP23-114M24, complete sequence Length = 191762 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 acatggggaaaaataatggc 122 |||||||||||||||||||| Sbjct: 108085 acatggggaaaaataatggc 108066
>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence Length = 167559 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ggtacacatggggaaaaata 117 |||||||||||||||||||| Sbjct: 135620 ggtacacatggggaaaaata 135601
>gb|AF098501.2| Caenorhabditis elegans fosmid H28G03, complete sequence Length = 44352 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcttgcatcctggcgctgga 140 |||||||||||||||||||| Sbjct: 18371 gcttgcatcctggcgctgga 18352
>emb|X07160.1|GMHSP185 Soybean gene for heat shock protein Gmhsp18.5-C (class I) Length = 1833 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 ctctggtgaagcaaaagcaaattg 253 ||||||| |||||||||||||||| Sbjct: 1377 ctctggttaagcaaaagcaaattg 1400
>emb|AL591980.1| Listeria monocytogenes strain EGD, complete genome, segment 8/12 Length = 103050 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gttaagtagatggacatcgt 43 |||||||||||||||||||| Sbjct: 79319 gttaagtagatggacatcgt 79300
>emb|CR391627.1| Gallus gallus finished cDNA, clone ChEST893o3 Length = 1074 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 aaaacaaggctgtctgtctg 184 |||||||||||||||||||| Sbjct: 747 aaaacaaggctgtctgtctg 728
>ref|NM_171682.1| Caenorhabditis elegans H28G03.1b (H28G03.1) mRNA, complete cds Length = 948 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcttgcatcctggcgctgga 140 |||||||||||||||||||| Sbjct: 445 gcttgcatcctggcgctgga 426
>ref|NM_171950.3| Caenorhabditis elegans H28G03.1c (H28G03.1) mRNA, complete cds Length = 2116 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcttgcatcctggcgctgga 140 |||||||||||||||||||| Sbjct: 534 gcttgcatcctggcgctgga 515
>ref|NM_171681.2| Caenorhabditis elegans H28G03.1a (H28G03.1) mRNA, complete cds Length = 1046 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcttgcatcctggcgctgga 140 |||||||||||||||||||| Sbjct: 543 gcttgcatcctggcgctgga 524
>dbj|AB189963.1| Pyrus communis PcVHA-A1 mRNA for vacuolar H+-ATPase catalytic subunit, complete cds Length = 2236 Score = 40.1 bits (20), Expect = 7.5 Identities = 80/100 (80%) Strand = Plus / Minus Query: 368 aggtcgtcgtataacttctggaatttcgcgacaaggacgtcttcgccttctgcggggtct 427 ||||| ||||||| ||||| ||||| || ||||| | ||||| ||||| || || || Sbjct: 1901 aggtcctcgtatagcttcttaaattttgccacaagagcttcttccccttcagccggatcc 1842 Query: 428 tcgaacttttgggatacaaggcggtaaaatagatcaccca 467 || |||||||| || || ||||||||||| ||||| |||| Sbjct: 1841 tcaaacttttgagacactaggcggtaaaagagatctccca 1802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,203,222 Number of Sequences: 3902068 Number of extensions: 5203222 Number of successful extensions: 113109 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 112950 Number of HSP's gapped (non-prelim): 143 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
