| Clone Name | rbags3g12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1951 Score = 71.9 bits (36), Expect = 8e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 92 tggcaggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttct 151 |||||||||||||||| ||||| | ||||| ||||| |||| ||| ||||||||||||| Sbjct: 1484 tggcaggcttatcaaggtccatttcttcaccatcagcttcagctttagacttctttttct 1425 Query: 152 tacttttcttggcaga 167 || ||||||| ||||| Sbjct: 1424 tatttttcttagcaga 1409
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 8e-10 Identities = 63/72 (87%) Strand = Plus / Plus Query: 96 aggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttact 155 |||||| || || ||||| || || |||||||| |||| ||| ||||||||||||||||| Sbjct: 13197473 aggcttgtccaggtccattgcttcgccgtcagcttcagctttagacttctttttcttact 13197532 Query: 156 tttcttggcaga 167 |||||||||||| Sbjct: 13197533 tttcttggcaga 13197544
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 71.9 bits (36), Expect = 8e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 96 aggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttact 155 |||||| || || ||||| || || |||||||| |||| ||| ||||||||||||||||| Sbjct: 29165 aggcttgtccaggtccattgcttcgccgtcagcttcagctttagacttctttttcttact 29106 Query: 156 tttcttggcaga 167 |||||||||||| Sbjct: 29105 tttcttggcaga 29094
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 71.9 bits (36), Expect = 8e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 92 tggcaggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttct 151 |||||||||||||||| ||||| | ||||| ||||| |||| ||| ||||||||||||| Sbjct: 27875934 tggcaggcttatcaaggtccatttcttcaccatcagcttcagctttagacttctttttct 27875875 Query: 152 tacttttcttggcaga 167 || ||||||| ||||| Sbjct: 27875874 tatttttcttagcaga 27875859
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 8e-10 Identities = 63/72 (87%) Strand = Plus / Plus Query: 96 aggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttact 155 |||||| || || ||||| || || |||||||| |||| ||| ||||||||||||||||| Sbjct: 13194248 aggcttgtccaggtccattgcttcgccgtcagcttcagctttagacttctttttcttact 13194307 Query: 156 tttcttggcaga 167 |||||||||||| Sbjct: 13194308 tttcttggcaga 13194319
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 71.9 bits (36), Expect = 8e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 92 tggcaggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttct 151 |||||||||||||||| ||||| | ||||| ||||| |||| ||| ||||||||||||| Sbjct: 39292 tggcaggcttatcaaggtccatttcttcaccatcagcttcagctttagacttctttttct 39233 Query: 152 tacttttcttggcaga 167 || ||||||| ||||| Sbjct: 39232 tatttttcttagcaga 39217
>dbj|AK107041.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C03, full insert sequence Length = 1951 Score = 71.9 bits (36), Expect = 8e-10 Identities = 66/76 (86%) Strand = Plus / Minus Query: 92 tggcaggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttct 151 |||||||||||||||| ||||| | ||||| ||||| |||| ||| ||||||||||||| Sbjct: 1484 tggcaggcttatcaaggtccatttcttcaccatcagcttcagctttagacttctttttct 1425 Query: 152 tacttttcttggcaga 167 || ||||||| ||||| Sbjct: 1424 tatttttcttagcaga 1409
>dbj|AK069305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D01, full insert sequence Length = 1835 Score = 71.9 bits (36), Expect = 8e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 96 aggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttact 155 |||||| || || ||||| || || |||||||| |||| ||| ||||||||||||||||| Sbjct: 1500 aggcttgtccaggtccattgcttcgccgtcagcttcagctttagacttctttttcttact 1441 Query: 156 tttcttggcaga 167 |||||||||||| Sbjct: 1440 tttcttggcaga 1429
>dbj|AK059432.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F04, full insert sequence Length = 910 Score = 71.9 bits (36), Expect = 8e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 96 aggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttact 155 |||||| || || ||||| || || |||||||| |||| ||| ||||||||||||||||| Sbjct: 428 aggcttgtccaggtccattgcttcgccgtcagcttcagctttagacttctttttcttact 369 Query: 156 tttcttggcaga 167 |||||||||||| Sbjct: 368 tttcttggcaga 357
>dbj|AK059026.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B10, full insert sequence Length = 471 Score = 71.9 bits (36), Expect = 8e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 96 aggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttact 155 |||||| || || ||||| || || |||||||| |||| ||| ||||||||||||||||| Sbjct: 98 aggcttgtccaggtccattgcttcgccgtcagcttcagctttagacttctttttcttact 39 Query: 156 tttcttggcaga 167 |||||||||||| Sbjct: 38 tttcttggcaga 27
>gb|AC136284.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1739D07, from chromosome 3, complete sequence Length = 149539 Score = 71.9 bits (36), Expect = 8e-10 Identities = 63/72 (87%) Strand = Plus / Minus Query: 96 aggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttact 155 |||||| || || ||||| || || |||||||| |||| ||| ||||||||||||||||| Sbjct: 122368 aggcttgtccaggtccattgcttcgccgtcagcttcagctttagacttctttttcttact 122309 Query: 156 tttcttggcaga 167 |||||||||||| Sbjct: 122308 tttcttggcaga 122297
>gb|AY106286.1| Zea mays PCO078601 mRNA sequence Length = 913 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 97 ggcttatcaagatccatggcgtcaccgtcagcctcagatttcgacttctttttcttactt 156 |||||||| | |||||| || ||||| |||| ||| | ||| | |||||||||||| ||| Sbjct: 223 ggcttatccacatccattgcatcaccatcagtctcggtttttgtcttctttttcttgctt 164 Query: 157 ttcttggcaga 167 ||||||||||| Sbjct: 163 ttcttggcaga 153
>gb|AC135359.2| Mus musculus BAC clone RP24-209E17 from chromosome 5, complete sequence Length = 199822 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cttctttttcttacttttctt 161 ||||||||||||||||||||| Sbjct: 47846 cttctttttcttacttttctt 47866
>gb|AC124720.3| Mus musculus BAC clone RP23-387F14 from chromosome 5, complete sequence Length = 193210 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 cttctttttcttacttttctt 161 ||||||||||||||||||||| Sbjct: 11553 cttctttttcttacttttctt 11533
>emb|AL355361.39| Human DNA sequence from clone RP11-58N22 on chromosome 10 Contains a CpG island, complete sequence Length = 153070 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ttcttacttttcttggcagac 168 ||||||||||||||||||||| Sbjct: 81076 ttcttacttttcttggcagac 81096
>gb|AC159091.2| Mus musculus chromosome 15, clone RP24-283J18, complete sequence Length = 65063 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Plus Query: 179 cattgtccttctccttatcctcctc 203 |||||||||||||||| |||||||| Sbjct: 24933 cattgtccttctccttttcctcctc 24957
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acttctttttcttacttttct 160 ||||||||||||||||||||| Sbjct: 22472348 acttctttttcttacttttct 22472368
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672C09 Length = 145655 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acttctttttcttacttttct 160 ||||||||||||||||||||| Sbjct: 96486 acttctttttcttacttttct 96506
>gb|AC169189.4| Erinaceus europaeus, clone XX-29452057A6, complete sequence Length = 34494 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 tccttctccttatcctcctct 204 ||||||||||||||||||||| Sbjct: 17028 tccttctccttatcctcctct 17048
>ref|XM_653000.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0488.2), mRNA Length = 2070 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ctccttatcctcctctgaga 208 |||||||||||||||||||| Sbjct: 591 ctccttatcctcctctgaga 572
>gb|AC127371.3| Mus musculus BAC clone RP23-35D4 from 15, complete sequence Length = 210688 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 163753 ttctttttcttacttttctt 163772
>emb|AJ877916.1| Emericella nidulans xanA gene for alpha-ketoglutarate dependent xanthine dioxygenase, exons 1-3 Length = 1875 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ctccttatcctcctctgaga 208 |||||||||||||||||||| Sbjct: 1131 ctccttatcctcctctgaga 1112
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence Length = 214913 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tccttctccttatcctcctc 203 |||||||||||||||||||| Sbjct: 140615 tccttctccttatcctcctc 140596
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 1193584 ttctttttcttacttttctt 1193565
>gb|AC113378.2| Homo sapiens chromosome 5 clone RP11-278A18, complete sequence Length = 93225 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 18682 ttctttttcttacttttctt 18663
>gb|AC010345.6| Homo sapiens chromosome 5 clone CTD-2017K17, complete sequence Length = 102001 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 98764 ttctttttcttacttttctt 98745
>gb|AC044782.6| Homo sapiens chromosome 10 clone RP11-170M17, complete sequence Length = 149041 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 acacatgtacaccattgtcc 186 |||||||||||||||||||| Sbjct: 41108 acacatgtacaccattgtcc 41127
>gb|AC069543.5| Homo sapiens chromosome 10 clone RP11-393H5, complete sequence Length = 179789 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 acacatgtacaccattgtcc 186 |||||||||||||||||||| Sbjct: 166218 acacatgtacaccattgtcc 166199
>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence Length = 159145 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 129250 ttctttttcttacttttctt 129269
>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence Length = 110085 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 87891 ttctttttcttacttttctt 87872
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence Length = 141894 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 111886 ttctttttcttacttttctt 111867
>emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-716B8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175009 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 gacttctttttcttacttttcttg 162 |||||||||||||| ||||||||| Sbjct: 151040 gacttctttttcttccttttcttg 151063
>gb|AC134793.10| Mus musculus chromosome 15, clone RP23-159M8, complete sequence Length = 216860 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 200427 ttctttttcttacttttctt 200408
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 cttctttttcttacttttcttggc 164 |||||||||||| ||||||||||| Sbjct: 1708624 cttctttttcttgcttttcttggc 1708601
>gb|AC117767.13| Mus musculus chromosome 1, clone RP24-507O16, complete sequence Length = 192892 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tccttctccttatcctcctc 203 |||||||||||||||||||| Sbjct: 89572 tccttctccttatcctcctc 89553
>emb|AL359333.6|CNS05TET Human chromosome 14 DNA sequence BAC R-478J3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 151719 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 gacttctttttcttacttttcttg 162 |||||||||||||| ||||||||| Sbjct: 73810 gacttctttttcttccttttcttg 73833
>emb|AL049501.1|MMB6L1C6 Mus musculus BAC B6L1C6, complete sequence Length = 30409 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttctttttcttacttttctt 161 |||||||||||||||||||| Sbjct: 101 ttctttttcttacttttctt 82 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,141,727 Number of Sequences: 3902068 Number of extensions: 2141727 Number of successful extensions: 54138 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54026 Number of HSP's gapped (non-prelim): 112 length of query: 231 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 209 effective length of database: 17,147,199,772 effective search space: 3583764752348 effective search space used: 3583764752348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)