ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3g08 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | ref|XM_467648.1| Oryza sativa (japonica cultivar-group), mRNA | 131 | 2e-27 | 2 | dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... | 131 | 2e-27 | 3 | dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic D... | 131 | 2e-27 | 4 | dbj|AK121645.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 131 | 2e-27 | 5 | emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chro... | 40 | 6.0 | 6 | gb|AC154304.1| Mus musculus BAC clone RP24-491H15 from 16, compl... | 40 | 6.0 |
|---|
>ref|XM_467648.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1649 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 75 tcttgattctccgactaagattctgcattatgtcgacgagcatcagcttcttctgcaatc 134 |||||||||| |||||||||||||| || | || | ||| | ||||||||||||||||| Sbjct: 1529 tcttgattctgcgactaagattctgtatcacatccaggagaagcagcttcttctgcaatc 1470 Query: 135 taaactggacggccagttcagtagtaagagggggttctccctttaggatggcctggtcat 194 ||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| | Sbjct: 1469 taaactgcacggctagttcagtagtaagaggtggttctccttttagtatggcctcgtctt 1410 Query: 195 ccattatctt 204 |||||||||| Sbjct: 1409 ccattatctt 1400 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 380 aagcgcccatctactatgtccggacctcctaagctgacctttagaatggcaccctctcc 438 ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||| Sbjct: 1227 aagcgcccatctactatttctggacctcctatgctgacctttagaatagcaccctctcc 1169
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 75 tcttgattctccgactaagattctgcattatgtcgacgagcatcagcttcttctgcaatc 134 |||||||||| |||||||||||||| || | || | ||| | ||||||||||||||||| Sbjct: 30614519 tcttgattctgcgactaagattctgtatcacatccaggagaagcagcttcttctgcaatc 30614460 Query: 135 taaactggacggccagttcagtagtaagagggggttctccctttaggatggcctggtcat 194 ||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| | Sbjct: 30614459 taaactgcacggctagttcagtagtaagaggtggttctccttttagtatggcctcgtctt 30614400 Query: 195 ccattatctt 204 |||||||||| Sbjct: 30614399 ccattatctt 30614390 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 380 aagcgcccatctactatgtccggacctcctaagctgacct 419 ||||||||||||||||| || |||||||||| |||||||| Sbjct: 30614217 aagcgcccatctactatttctggacctcctatgctgacct 30614178
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 75 tcttgattctccgactaagattctgcattatgtcgacgagcatcagcttcttctgcaatc 134 |||||||||| |||||||||||||| || | || | ||| | ||||||||||||||||| Sbjct: 126527 tcttgattctgcgactaagattctgtatcacatccaggagaagcagcttcttctgcaatc 126468 Query: 135 taaactggacggccagttcagtagtaagagggggttctccctttaggatggcctggtcat 194 ||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| | Sbjct: 126467 taaactgcacggctagttcagtagtaagaggtggttctccttttagtatggcctcgtctt 126408 Query: 195 ccattatctt 204 |||||||||| Sbjct: 126407 ccattatctt 126398 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 380 aagcgcccatctactatgtccggacctcctaagctgacct 419 ||||||||||||||||| || |||||||||| |||||||| Sbjct: 126225 aagcgcccatctactatttctggacctcctatgctgacct 126186
>dbj|AK121645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058C09, full insert sequence Length = 1649 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 75 tcttgattctccgactaagattctgcattatgtcgacgagcatcagcttcttctgcaatc 134 |||||||||| |||||||||||||| || | || | ||| | ||||||||||||||||| Sbjct: 1529 tcttgattctgcgactaagattctgtatcacatccaggagaagcagcttcttctgcaatc 1470 Query: 135 taaactggacggccagttcagtagtaagagggggttctccctttaggatggcctggtcat 194 ||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| | Sbjct: 1469 taaactgcacggctagttcagtagtaagaggtggttctccttttagtatggcctcgtctt 1410 Query: 195 ccattatctt 204 |||||||||| Sbjct: 1409 ccattatctt 1400 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 380 aagcgcccatctactatgtccggacctcctaagctgacctttagaatggcaccctctcc 438 ||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||| Sbjct: 1227 aagcgcccatctactatttctggacctcctatgctgacctttagaatagcaccctctcc 1169
>emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chromosome 2, complete sequence Length = 118767 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 atcagcttcttctgcaatct 135 |||||||||||||||||||| Sbjct: 80807 atcagcttcttctgcaatct 80826
>gb|AC154304.1| Mus musculus BAC clone RP24-491H15 from 16, complete sequence Length = 169500 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ttctccctttaggatggcct 188 |||||||||||||||||||| Sbjct: 61351 ttctccctttaggatggcct 61332 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,551,184 Number of Sequences: 3902068 Number of extensions: 2551184 Number of successful extensions: 53204 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53173 Number of HSP's gapped (non-prelim): 27 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
