ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464442.1| Oryza sativa (japonica cultivar-group), mRNA 174 2e-40
2dbj|AK064096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
4dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
5gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.51
6gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.51
7gb|AY545011.1| Burkholderia pseudomallei clone BPtf0023 putative... 44 0.51
8emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.51
9dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds 44 0.51
10gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.51
11gb|AC154340.3| Mus musculus BAC clone RP23-238B22 from chromosom... 44 0.51
12gb|AC138585.14| Mus musculus chromosome 3, clone RP23-174P13, co... 44 0.51
13gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.51
14gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, com... 42 2.0
15emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chr... 42 2.0
16gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, com... 42 2.0
17emb|AL935058.12| Mouse DNA sequence from clone RP23-409M4 on chr... 42 2.0
18dbj|AP004290.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.0
19gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, comp... 40 8.0
20gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 8.0
21gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C... 40 8.0
22gb|AC128859.4| Rattus norvegicus 10 BAC CH230-436I22 (Children's... 40 8.0
23gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
24gb|AC120974.7| Rattus norvegicus 11 BAC CH230-358O2 (Children's ... 40 8.0
25gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromo... 40 8.0
26gb|AC068066.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.0
27gb|AE009077.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 8.0
28gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 8.0
29gb|AC109151.9| Mus musculus chromosome 1, clone RP24-530O9, comp... 40 8.0
30gb|DQ483803.1| Gymnogyps californianus clone 226F microsatellite... 40 8.0
31ref|XM_820517.1| Trypanosoma brucei TREU927 clone RPCI93-27C5 hy... 40 8.0
32gb|AC132362.3| Mus musculus BAC clone RP23-455B5 from chromosome... 40 8.0
33gb|AC129211.3| Mus musculus BAC clone RP24-348E18 from chromosom... 40 8.0
34gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome... 40 8.0
35gb|AC129082.6| Mus musculus BAC clone RP24-324M11 from chromosom... 40 8.0
36gb|AC073422.8| Homo sapiens BAC clone RP11-535F1 from 7, complet... 40 8.0
37gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, co... 40 8.0
38gb|AC130731.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
39gb|AC183337.3| Oryctolagus cuniculus clone LB1-162M15, complete ... 40 8.0
40emb|AL672040.10| Human DNA sequence from clone RP11-449L4 on chr... 40 8.0
41emb|AL354897.11| Human DNA sequence from clone RP11-323N23 on ch... 40 8.0
42emb|AL353753.6| Human DNA sequence from clone RP11-477G9 on chro... 40 8.0
43gb|AC158931.4| Mus musculus chromosome 1, clone RP23-3H19, compl... 40 8.0
44emb|AL021330.1|HS244F1 Human DNA sequence from clone RP1-244F1 o... 40 8.0
45gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell ... 40 8.0
46ref|NM_166897.1| Drosophila melanogaster broad CG11491-RC, trans... 40 8.0
47ref|NM_166896.1| Drosophila melanogaster broad CG11491-RB, trans... 40 8.0
48gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 8.0
49gb|AY069756.1| Drosophila melanogaster LP12157 full length cDNA 40 8.0
50gb|DQ295222.1| Spironucleus barkhanus cytosolic heat shock prote... 40 8.0
51gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141... 40 8.0
52emb|AJ550757.1|LGR550757 Lopezia grandiflora partial pgiC gene f... 40 8.0
53dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
54dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
55gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, com... 40 8.0
56dbj|AB112577.1| Pseudomonas syringae pv. pisi hrpS, hrpA, hrpZ, ... 40 8.0
57dbj|AB112576.1| Pseudomonas syringae pv. aceris hrpS, hrpA, hrpZ... 40 8.0
58dbj|AB112573.1| Pseudomonas syringae pv. lapsa hrpS, hrpA, hrpZ,... 40 8.0
59emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a... 40 8.0
60gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 o... 40 8.0
61gb|AC121114.10| Mus musculus chromosome 15, clone RP23-63M19, co... 40 8.0
62dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.0
63dbj|AP006288.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.0
64gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
65emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.0
66gb|U51585.1|DMU51585 Drosophila melanogaster Broad-Complex prote... 40 8.0
67emb|AL009146.1|DMC17A9 Drosophila melanogaster cosmid 17A9 40 8.0
68gb|L14775.1|PSEHRPZ Pseudomonas syringae pv. syringae harpinPss ... 40 8.0 
>ref|XM_464442.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1404

 Score =  174 bits (88), Expect = 2e-40
 Identities = 185/216 (85%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                        
Query: 366  tggagctgctccctctctttctccatcagcagctctttctgctcaaagcgacttatctta 425
            ||||| |||| |||||||||||||||||||||||| |||||||| || |||| ||| |||
Sbjct: 1091 tggagttgcttcctctctttctccatcagcagctccttctgctcgaaacgacgtatttta 1032

                                                                        
Query: 426  tcttggatttccttcatctggacatccactatggccgataaagattgctctatatctttt 485
            || ||||||||||||||||| ||| |||||||| | |||||||| ||||||||| |  ||
Sbjct: 1031 tcctggatttccttcatctgaacacccactatgtcagataaagactgctctatagc-ctt 973

                                                                        
Query: 486  ttgctccttttgaagttgtacttgtgcatttgcggatgcctctttgagtaaatcggtgtc 545
              | ||||||| ||||||||||||||| || || || ||||||||||| |||||  || |
Sbjct: 972  ccgttccttttcaagttgtacttgtgcgttggcagacgcctctttgagcaaatcattggc 913

                                                
Query: 546  tgaaagcccattggtgtaagaagattcttcttcctt 581
            |||||| ||||| ||| |||||||||||||||||||
Sbjct: 912  tgaaagaccatttgtgcaagaagattcttcttcctt 877
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>dbj|AK064096.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F11, full
            insert sequence
          Length = 1404

 Score =  174 bits (88), Expect = 2e-40
 Identities = 185/216 (85%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                        
Query: 366  tggagctgctccctctctttctccatcagcagctctttctgctcaaagcgacttatctta 425
            ||||| |||| |||||||||||||||||||||||| |||||||| || |||| ||| |||
Sbjct: 1091 tggagttgcttcctctctttctccatcagcagctccttctgctcgaaacgacgtatttta 1032

                                                                        
Query: 426  tcttggatttccttcatctggacatccactatggccgataaagattgctctatatctttt 485
            || ||||||||||||||||| ||| |||||||| | |||||||| ||||||||| |  ||
Sbjct: 1031 tcctggatttccttcatctgaacacccactatgtcagataaagactgctctatagc-ctt 973

                                                                        
Query: 486  ttgctccttttgaagttgtacttgtgcatttgcggatgcctctttgagtaaatcggtgtc 545
              | ||||||| ||||||||||||||| || || || ||||||||||| |||||  || |
Sbjct: 972  ccgttccttttcaagttgtacttgtgcgttggcagacgcctctttgagcaaatcattggc 913

                                                
Query: 546  tgaaagcccattggtgtaagaagattcttcttcctt 581
            |||||| ||||| ||| |||||||||||||||||||
Sbjct: 912  tgaaagaccatttgtgcaagaagattcttcttcctt 877
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                           
Query: 366     tggagctgctccctctctttctccatcagcagctctttctgctcaaagcgacttatctta 425
               ||||| |||| |||||||||||||||||||||||| |||||||| || |||| ||| |||
Sbjct: 5241790 tggagttgcttcctctctttctccatcagcagctccttctgctcgaaacgacgtatttta 5241731

                                   
Query: 426     tcttggatttccttcatctg 445
               || |||||||||||||||||
Sbjct: 5241730 tcctggatttccttcatctg 5241711



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                           
Query: 490     tccttttgaagttgtacttgtgcatttgcggatgcctctttgagtaaatcggtgtctgaa 549
               ||||||| ||||||||||||||| || || || ||||||||||| |||||  || |||||
Sbjct: 5241576 tccttttcaagttgtacttgtgcgttggcagacgcctctttgagcaaatcattggctgaa 5241517

                                       
Query: 550     agcccattggtgtaagaagattct 573
               || ||||| ||| |||||||||||
Sbjct: 5241516 agaccatttgtgcaagaagattct 5241493
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>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0437H03
          Length = 170173

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                          
Query: 366    tggagctgctccctctctttctccatcagcagctctttctgctcaaagcgacttatctta 425
              ||||| |||| |||||||||||||||||||||||| |||||||| || |||| ||| |||
Sbjct: 135243 tggagttgcttcctctctttctccatcagcagctccttctgctcgaaacgacgtatttta 135184

                                  
Query: 426    tcttggatttccttcatctg 445
              || |||||||||||||||||
Sbjct: 135183 tcctggatttccttcatctg 135164



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                          
Query: 490    tccttttgaagttgtacttgtgcatttgcggatgcctctttgagtaaatcggtgtctgaa 549
              ||||||| ||||||||||||||| || || || ||||||||||| |||||  || |||||
Sbjct: 135029 tccttttcaagttgtacttgtgcgttggcagacgcctctttgagcaaatcattggctgaa 134970

                                      
Query: 550    agcccattggtgtaagaagattct 573
              || ||||| ||| |||||||||||
Sbjct: 134969 agaccatttgtgcaagaagattct 134946
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 321    tgcacaaccgcaagctgatcca 342
              ||||||||||||||||||||||
Sbjct: 673552 tgcacaaccgcaagctgatcca 673531
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 321     tgcacaaccgcaagctgatcca 342
               ||||||||||||||||||||||
Sbjct: 2591999 tgcacaaccgcaagctgatcca 2591978
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>gb|AY545011.1| Burkholderia pseudomallei clone BPtf0023 putative AraC/XylS family
           transcription factor gene, complete cds
          Length = 945

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 321 tgcacaaccgcaagctgatcca 342
           ||||||||||||||||||||||
Sbjct: 623 tgcacaaccgcaagctgatcca 644
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 321    tgcacaaccgcaagctgatcca 342
              ||||||||||||||||||||||
Sbjct: 772041 tgcacaaccgcaagctgatcca 772020
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>dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds
          Length = 153079

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 267   ggtttctcctcctccttgttct 288
             ||||||||||||||||||||||
Sbjct: 13408 ggtttctcctcctccttgttct 13429
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 321    tgcacaaccgcaagctgatcca 342
              ||||||||||||||||||||||
Sbjct: 502824 tgcacaaccgcaagctgatcca 502803
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>gb|AC154340.3| Mus musculus BAC clone RP23-238B22 from chromosome 14, complete
             sequence
          Length = 210115

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 5     gtgtttttaagaacaccatttc 26
             ||||||||||||||||||||||
Sbjct: 76274 gtgtttttaagaacaccatttc 76295
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>gb|AC138585.14| Mus musculus chromosome 3, clone RP23-174P13, complete sequence
          Length = 209896

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 560   tgtaagaagattcttcttcctt 581
             ||||||||||||||||||||||
Sbjct: 92915 tgtaagaagattcttcttcctt 92894
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 321     tgcacaaccgcaagctgatcca 342
               ||||||||||||||||||||||
Sbjct: 2239514 tgcacaaccgcaagctgatcca 2239535
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>gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, complete sequence
          Length = 275731

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 269   tttctcctcctccttgttctc 289
             |||||||||||||||||||||
Sbjct: 85101 tttctcctcctccttgttctc 85081
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>emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chromosome 9q13-21.2
             Contains a novel gene (FLJ20559), the OSTF1 gene for
             osteoclast stimulating factor 1 (OSF, SH3P2) and a CpG
             island, complete sequence
          Length = 153392

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   gcctgcaaaagaagattaaat 129
             |||||||||||||||||||||
Sbjct: 42811 gcctgcaaaagaagattaaat 42791
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>gb|AC104980.5| Homo sapiens chromosome 8, clone RP11-281D17, complete sequence
          Length = 187226

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 570    ttcttcttccttagtgctgct 590
              |||||||||||||||||||||
Sbjct: 101433 ttcttcttccttagtgctgct 101413
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>emb|AL935058.12| Mouse DNA sequence from clone RP23-409M4 on chromosome 2, complete
              sequence
          Length = 143502

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 269    tttctcctcctccttgttctc 289
              |||||||||||||||||||||
Sbjct: 121116 tttctcctcctccttgttctc 121136
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>dbj|AP004290.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB261B8
          Length = 113201

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 570   ttcttcttccttagtgctgct 590
             |||||||||||||||||||||
Sbjct: 72554 ttcttcttccttagtgctgct 72574
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>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence
          Length = 218755

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  gaggaacagagttccaatcc 202
            ||||||||||||||||||||
Sbjct: 6708 gaggaacagagttccaatcc 6689
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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    atgcggtctgcgctgatgct 321
              ||||||||||||||||||||
Sbjct: 731145 atgcggtctgcgctgatgct 731126
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>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
          Length = 126762

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   atgcggtctgcgctgatgct 321
             ||||||||||||||||||||
Sbjct: 40093 atgcggtctgcgctgatgct 40074
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>gb|AC128859.4| Rattus norvegicus 10 BAC CH230-436I22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 156078

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   ttctcctcctccttgttctc 289
             ||||||||||||||||||||
Sbjct: 99424 ttctcctcctccttgttctc 99443
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>gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0018H09, complete sequence
          Length = 155329

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 396    agctctttctgctcaaagcg 415
              ||||||||||||||||||||
Sbjct: 151403 agctctttctgctcaaagcg 151422
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>gb|AC120974.7| Rattus norvegicus 11 BAC CH230-358O2 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 198650

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    gtttctcctcctccttgttc 287
              ||||||||||||||||||||
Sbjct: 141630 gtttctcctcctccttgttc 141611
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>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete
              sequence
          Length = 185010

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    ctcctccttgttctcagctg 294
              ||||||||||||||||||||
Sbjct: 155426 ctcctccttgttctcagctg 155445
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>gb|AC068066.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-414I9, complete
             sequence
          Length = 184879

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    gaagcagccacatacaaaca 91
             ||||||||||||||||||||
Sbjct: 23994 gaagcagccacatacaaaca 24013
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>gb|AE009077.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 103
            of 256 of the complete sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  catcagcagctctttctgct 408
            ||||||||||||||||||||
Sbjct: 9884 catcagcagctctttctgct 9865
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     caagctgatccatgaaaagc 350
               ||||||||||||||||||||
Sbjct: 1353924 caagctgatccatgaaaagc 1353943
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>gb|AC109151.9| Mus musculus chromosome 1, clone RP24-530O9, complete sequence
          Length = 130025

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   ccctctctttctccatcagc 395
             ||||||||||||||||||||
Sbjct: 83095 ccctctctttctccatcagc 83076
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>gb|DQ483803.1| Gymnogyps californianus clone 226F microsatellite sequence
          Length = 496

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 ttctcctcctccttgttctc 289
           ||||||||||||||||||||
Sbjct: 158 ttctcctcctccttgttctc 139
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>ref|XM_820517.1| Trypanosoma brucei TREU927 clone RPCI93-27C5 hypothetical protein
           (Tb927.3.2810) partial mRNA
          Length = 5028

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 atgcggtctgcgctgatgct 321
           ||||||||||||||||||||
Sbjct: 422 atgcggtctgcgctgatgct 441
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>gb|AC132362.3| Mus musculus BAC clone RP23-455B5 from chromosome 3, complete sequence
          Length = 164762

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     agcagccacatacaaacaga 93
              ||||||||||||||||||||
Sbjct: 133861 agcagccacatacaaacaga 133842
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>gb|AC129211.3| Mus musculus BAC clone RP24-348E18 from chromosome 8, complete sequence
          Length = 167455

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 570    ttcttcttccttagtgctgc 589
              ||||||||||||||||||||
Sbjct: 167020 ttcttcttccttagtgctgc 167001
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>gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome 3, complete sequence
          Length = 175133

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     agcagccacatacaaacaga 93
              ||||||||||||||||||||
Sbjct: 101118 agcagccacatacaaacaga 101137
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>gb|AC129082.6| Mus musculus BAC clone RP24-324M11 from chromosome 8, complete sequence
          Length = 141671

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 570    ttcttcttccttagtgctgc 589
              ||||||||||||||||||||
Sbjct: 126271 ttcttcttccttagtgctgc 126290
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>gb|AC073422.8| Homo sapiens BAC clone RP11-535F1 from 7, complete sequence
          Length = 80743

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   cctcctccttgttctcagct 293
             ||||||||||||||||||||
Sbjct: 44827 cctcctccttgttctcagct 44846
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>gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, complete sequence
          Length = 189545

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    gaggaacagagttccaatcc 202
              ||||||||||||||||||||
Sbjct: 131495 gaggaacagagttccaatcc 131514
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>gb|AC130731.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692E03,
             complete sequence
          Length = 74462

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   agctctttctgctcaaagcg 415
             ||||||||||||||||||||
Sbjct: 22396 agctctttctgctcaaagcg 22415
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>gb|AC183337.3| Oryctolagus cuniculus clone LB1-162M15, complete sequence
          Length = 92063

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   gctgctccctctctttctcc 389
             ||||||||||||||||||||
Sbjct: 55578 gctgctccctctctttctcc 55559
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>emb|AL672040.10| Human DNA sequence from clone RP11-449L4 on chromosome X, complete
             sequence
          Length = 117297

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 378   ctctctttctccatcagcagctctttct 405
             |||||||||||| ||||||| |||||||
Sbjct: 92548 ctctctttctccttcagcagatctttct 92521
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>emb|AL354897.11| Human DNA sequence from clone RP11-323N23 on chromosome 9 Contains a
             pseudogene similar to part of ubiquitin-conjugating enzyme
             E2, complete sequence
          Length = 129992

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 560   tgtaagaagattcttcttccttag 583
             |||||||||||| |||||||||||
Sbjct: 72901 tgtaagaagattattcttccttag 72878
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>emb|AL353753.6| Human DNA sequence from clone RP11-477G9 on chromosome 9, complete
           sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 tccttgttctcagctgctac 298
           ||||||||||||||||||||
Sbjct: 467 tccttgttctcagctgctac 448
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>gb|AC158931.4| Mus musculus chromosome 1, clone RP23-3H19, complete sequence
          Length = 212994

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 376    ccctctctttctccatcagc 395
              ||||||||||||||||||||
Sbjct: 189767 ccctctctttctccatcagc 189748
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>emb|AL021330.1|HS244F1 Human DNA sequence from clone RP1-244F1 on chromosome 6q16.1-16.3
             Contains a nucleophosmin (nucleolar phosphoprotein B23,
             numatrin) (NPM1) (B23, NPM) pseudogene and a novel
             pseudogene, complete sequence
          Length = 84621

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   gctgctccctctctttctcc 389
             ||||||||||||||||||||
Sbjct: 24683 gctgctccctctctttctcc 24702
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>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177096

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    ttctcctcctccttgttctc 289
              ||||||||||||||||||||
Sbjct: 125605 ttctcctcctccttgttctc 125586
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>ref|NM_166897.1| Drosophila melanogaster broad CG11491-RC, transcript variant C (br),
            mRNA
          Length = 3886

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  ttctcctcctccttgttctc 289
            ||||||||||||||||||||
Sbjct: 3749 ttctcctcctccttgttctc 3730
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>ref|NM_166896.1| Drosophila melanogaster broad CG11491-RB, transcript variant B (br),
            mRNA
          Length = 4174

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  ttctcctcctccttgttctc 289
            ||||||||||||||||||||
Sbjct: 4037 ttctcctcctccttgttctc 4018
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 389     catcagcagctctttctgct 408
               ||||||||||||||||||||
Sbjct: 1137458 catcagcagctctttctgct 1137439
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>gb|AY069756.1| Drosophila melanogaster LP12157 full length cDNA
          Length = 4174

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  ttctcctcctccttgttctc 289
            ||||||||||||||||||||
Sbjct: 4037 ttctcctcctccttgttctc 4018
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>gb|DQ295222.1| Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90)
           mRNA, complete cds
          Length = 2278

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 ttctcctcctccttgttctc 289
           ||||||||||||||||||||
Sbjct: 890 ttctcctcctccttgttctc 871
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>gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141J21 containing NRXN2 (NRXN2)
             gene, partial cds; and RST and OAT4 genes, complete cds,
             complete sequence
          Length = 170114

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   ctcctccttgttctcagctg 294
             ||||||||||||||||||||
Sbjct: 70026 ctcctccttgttctcagctg 70045
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>emb|AJ550757.1|LGR550757 Lopezia grandiflora partial pgiC gene for cytosolic phosphoglucose
            isomerase, exons 17-21
          Length = 2533

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 493  ttttgaagttgtacttgtgcattt 516
            ||||||| ||||||||||||||||
Sbjct: 1940 ttttgaacttgtacttgtgcattt 1963
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 396      agctctttctgctcaaagcg 415
                ||||||||||||||||||||
Sbjct: 17299091 agctctttctgctcaaagcg 17299110
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 396      agctctttctgctcaaagcg 415
                ||||||||||||||||||||
Sbjct: 11249149 agctctttctgctcaaagcg 11249168
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>gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, complete sequence
          Length = 215079

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    tttctcctcctccttgttct 288
              ||||||||||||||||||||
Sbjct: 211188 tttctcctcctccttgttct 211169
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>dbj|AB112577.1| Pseudomonas syringae pv. pisi hrpS, hrpA, hrpZ, hrpB genes, complete
            and partial cds, strain: Pisum-1
          Length = 2356

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  caagctgatccatgaaaagc 350
            ||||||||||||||||||||
Sbjct: 1207 caagctgatccatgaaaagc 1226
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>dbj|AB112576.1| Pseudomonas syringae pv. aceris hrpS, hrpA, hrpZ, hrpB genes,
            complete and partial cds, strain: kaede1-1
          Length = 2356

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  caagctgatccatgaaaagc 350
            ||||||||||||||||||||
Sbjct: 1207 caagctgatccatgaaaagc 1226
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>dbj|AB112573.1| Pseudomonas syringae pv. lapsa hrpS, hrpA, hrpZ, hrpB genes, complete
            and partial cds, strain: NCPPB2096
          Length = 2359

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  caagctgatccatgaaaagc 350
            ||||||||||||||||||||
Sbjct: 1210 caagctgatccatgaaaagc 1229
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>emb|CR962123.2| Medicago truncatula chromosome 5 clone mth2-167a19, COMPLETE SEQUENCE
          Length = 128818

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tacaaacagaatacactaat 103
             ||||||||||||||||||||
Sbjct: 99719 tacaaacagaatacactaat 99738
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>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete
              sequence
          Length = 304204

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    ttctcctcctccttgttctc 289
              ||||||||||||||||||||
Sbjct: 187915 ttctcctcctccttgttctc 187896
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>gb|AC121114.10| Mus musculus chromosome 15, clone RP23-63M19, complete sequence
          Length = 337658

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tttctcctcctccttgttct 288
             ||||||||||||||||||||
Sbjct: 27187 tttctcctcctccttgttct 27168
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>dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-727K3, complete
             sequence
          Length = 160739

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   ctcctccttgttctcagctg 294
             ||||||||||||||||||||
Sbjct: 90903 ctcctccttgttctcagctg 90884
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>dbj|AP006288.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-128H22, complete
              sequence
          Length = 169259

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    ctcctccttgttctcagctg 294
              ||||||||||||||||||||
Sbjct: 130058 ctcctccttgttctcagctg 130039
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 396      agctctttctgctcaaagcg 415
                ||||||||||||||||||||
Sbjct: 17253462 agctctttctgctcaaagcg 17253481
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>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 154826

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    agctctttctgctcaaagcg 415
              ||||||||||||||||||||
Sbjct: 104278 agctctttctgctcaaagcg 104259
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>gb|U51585.1|DMU51585 Drosophila melanogaster Broad-Complex protein isoform Z4 (BR-C) mRNA,
            complete cds
          Length = 3869

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  ttctcctcctccttgttctc 289
            ||||||||||||||||||||
Sbjct: 3731 ttctcctcctccttgttctc 3712
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>emb|AL009146.1|DMC17A9 Drosophila melanogaster cosmid 17A9
          Length = 39582

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   ttctcctcctccttgttctc 289
             ||||||||||||||||||||
Sbjct: 26179 ttctcctcctccttgttctc 26160
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>gb|L14775.1|PSEHRPZ Pseudomonas syringae pv. syringae harpinPss (hrpZ) gene, complete
           cds
          Length = 1400

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 caagctgatccatgaaaagc 350
           ||||||||||||||||||||
Sbjct: 335 caagctgatccatgaaaagc 354


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,419,367
Number of Sequences: 3902068
Number of extensions: 6419367
Number of successful extensions: 130177
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129764
Number of HSP's gapped (non-prelim): 413
length of query: 591
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 568
effective length of database: 17,143,297,704
effective search space: 9737393095872
effective search space used: 9737393095872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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