| Clone Name | rbags3f23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191983.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1236 Score = 319 bits (161), Expect = 6e-84 Identities = 335/393 (85%) Strand = Plus / Minus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 |||||| |||||||| ||||||||||| || || ||||||||| |||| ||||||||||| Sbjct: 1227 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 1168 Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370 |||||||||||||| || ||||| || || || ||||||| || ||| ||||||||||| Sbjct: 1167 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 1108 Query: 371 caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430 |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| Sbjct: 1107 caactcatcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaag 1048 Query: 431 tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490 ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || Sbjct: 1047 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 988 Query: 491 gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550 |||||||||||| |||||||||| || | ||||||| | || |||| | || ||| Sbjct: 987 tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 928 Query: 551 ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610 ||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||| Sbjct: 927 ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 868 Query: 611 tcggcgtaacattgctgcgtctagttcccatgg 643 ||||| ||||||||||| || ||||||||||| Sbjct: 867 acggcgcaacattgctgcatccagttcccatgg 835
>dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035A18, full insert sequence Length = 1676 Score = 319 bits (161), Expect = 6e-84 Identities = 335/393 (85%) Strand = Plus / Minus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 |||||| |||||||| ||||||||||| || || ||||||||| |||| ||||||||||| Sbjct: 1352 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 1293 Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370 |||||||||||||| || ||||| || || || ||||||| || ||| ||||||||||| Sbjct: 1292 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 1233 Query: 371 caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430 |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| Sbjct: 1232 caactcatcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaag 1173 Query: 431 tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490 ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || Sbjct: 1172 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 1113 Query: 491 gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550 |||||||||||| |||||||||| || | ||||||| | || |||| | || ||| Sbjct: 1112 tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 1053 Query: 551 ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610 ||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||| Sbjct: 1052 ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 993 Query: 611 tcggcgtaacattgctgcgtctagttcccatgg 643 ||||| ||||||||||| || ||||||||||| Sbjct: 992 acggcgcaacattgctgcatccagttcccatgg 960
>dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F15, full insert sequence Length = 1627 Score = 319 bits (161), Expect = 6e-84 Identities = 335/393 (85%) Strand = Plus / Minus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 |||||| |||||||| ||||||||||| || || ||||||||| |||| ||||||||||| Sbjct: 1321 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 1262 Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370 |||||||||||||| || ||||| || || || ||||||| || ||| ||||||||||| Sbjct: 1261 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 1202 Query: 371 caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430 |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| Sbjct: 1201 caactcatcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaag 1142 Query: 431 tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490 ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || Sbjct: 1141 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 1082 Query: 491 gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550 |||||||||||| |||||||||| || | ||||||| | || |||| | || ||| Sbjct: 1081 tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 1022 Query: 551 ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610 ||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||| Sbjct: 1021 ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 962 Query: 611 tcggcgtaacattgctgcgtctagttcccatgg 643 ||||| ||||||||||| || ||||||||||| Sbjct: 961 acggcgcaacattgctgcatccagttcccatgg 929
>dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A09, full insert sequence Length = 837 Score = 319 bits (161), Expect = 6e-84 Identities = 335/393 (85%) Strand = Plus / Minus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 |||||| |||||||| ||||||||||| || || ||||||||| |||| ||||||||||| Sbjct: 529 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 470 Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370 |||||||||||||| || ||||| || || || ||||||| || ||| ||||||||||| Sbjct: 469 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 410 Query: 371 caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430 |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| Sbjct: 409 caactcatcctcaggcacttcttcttgccttccttcaagaaccggcattaaccttctaag 350 Query: 431 tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490 ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| || Sbjct: 349 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 290 Query: 491 gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550 |||||||||||| |||||||||| || | ||||||| | || |||| | || ||| Sbjct: 289 tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 230 Query: 551 ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610 ||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||| Sbjct: 229 ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 170 Query: 611 tcggcgtaacattgctgcgtctagttcccatgg 643 ||||| ||||||||||| || ||||||||||| Sbjct: 169 acggcgcaacattgctgcatccagttcccatgg 137
>gb|AY107250.1| Zea mays PCO068082 mRNA sequence Length = 1198 Score = 165 bits (83), Expect = 2e-37 Identities = 173/203 (85%) Strand = Plus / Minus Query: 399 ctgccttctagaactgccattaaccgtctaagtggttgcattgctgcctccttacaaaca 458 |||||||| ||||||||||||| |||||| || || ||||||||||| ||||| || || Sbjct: 1194 ctgccttcaagaactgccattacccgtcttaggggctgcattgctgcttccttgcatacc 1135 Query: 459 aggcgtatatcagagccggaatatccttcggtgttctccacaagagcatcatatggaatc 518 ||||| ||||||||||| ||||| ||||| || |||||||||||| ||||||| |||||| Sbjct: 1134 aggcgaatatcagagccagaatacccttcagttttctccacaagaacatcatagggaatc 1075 Query: 519 tccattgtgtcttgagtcaatggaaggaactcttcaaacatagcatgcctagcttccgcc 578 ||||||||| | | || |||| |||| |||||||||||||||||| ||||| |||| | Sbjct: 1074 tccattgtgccaggtgtatatggcaggagctcttcaaacatagcatgtctagcatccggc 1015 Query: 579 tctggtaagggcacaagaatacg 601 ||||| || || ||||||||||| Sbjct: 1014 tctggcaatggaacaagaatacg 992
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Plus Query: 376 catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 435 ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| |||| Sbjct: 27654270 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 27654329 Query: 436 gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 495 ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || |||| Sbjct: 27654330 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 27654389 Query: 496 ccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactcttcaa 555 |||||||| |||||||||| || | ||||||| | || |||| | || |||||||| Sbjct: 27654390 ccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctcttcaa 27654449 Query: 556 acatagcatgcctagcttccgcctctggtaagggcacaagaat 598 |||| ||||| |||||||| |||||||||||| |||||||| Sbjct: 27654450 acatggcatgtctagcttcttgctctggtaagggaacaagaat 27654492 Score = 115 bits (58), Expect = 2e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 |||||| |||||||| ||||||||||| || || ||||||||| |||| ||||||||||| Sbjct: 27653600 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 27653659 Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370 |||||||||||||| || ||||| || || || ||||||| || ||| ||||||||||| Sbjct: 27653660 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 27653719 Query: 371 caactc 376 |||||| Sbjct: 27653720 caactc 27653725 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 255 tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314 ||||| || ||||| || || ||||||||||| | ||||||||||||||| ||||||||| Sbjct: 31804275 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 31804216 Query: 315 cgtgtattcctcagagcaagttcgat 340 | ||| ||||||| ||||| |||||| Sbjct: 31804215 cttgtgttcctcaaagcaacttcgat 31804190 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 599 acgtttttccaatcggcgtaacattgctgcgtctagttcccatgg 643 |||||| ||||| ||||| ||||||||||| || ||||||||||| Sbjct: 27655214 acgtttctccaaacggcgcaacattgctgcatccagttcccatgg 27655258 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 552 tcaaacatagcatgcctagcttccgcctc 580 ||||||||||||||||| ||||| ||||| Sbjct: 31803853 tcaaacatagcatgccttgcttcagcctc 31803825
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485G01 Length = 167203 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Plus Query: 376 catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 435 ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| |||| Sbjct: 62836 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 62895 Query: 436 gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 495 ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || |||| Sbjct: 62896 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 62955 Query: 496 ccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactcttcaa 555 |||||||| |||||||||| || | ||||||| | || |||| | || |||||||| Sbjct: 62956 ccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctcttcaa 63015 Query: 556 acatagcatgcctagcttccgcctctggtaagggcacaagaat 598 |||| ||||| |||||||| |||||||||||| |||||||| Sbjct: 63016 acatggcatgtctagcttcttgctctggtaagggaacaagaat 63058 Score = 115 bits (58), Expect = 2e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 |||||| |||||||| ||||||||||| || || ||||||||| |||| ||||||||||| Sbjct: 62166 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 62225 Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370 |||||||||||||| || ||||| || || || ||||||| || ||| ||||||||||| Sbjct: 62226 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 62285 Query: 371 caactc 376 |||||| Sbjct: 62286 caactc 62291 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 599 acgtttttccaatcggcgtaacattgctgcgtctagttcccatgg 643 |||||| ||||| ||||| ||||||||||| || ||||||||||| Sbjct: 63780 acgtttctccaaacggcgcaacattgctgcatccagttcccatgg 63824
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0007F06 Length = 150817 Score = 157 bits (79), Expect = 5e-35 Identities = 187/223 (83%) Strand = Plus / Plus Query: 376 catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 435 ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| |||| Sbjct: 121564 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 121623 Query: 436 gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 495 ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || |||| Sbjct: 121624 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 121683 Query: 496 ccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactcttcaa 555 |||||||| |||||||||| || | ||||||| | || |||| | || |||||||| Sbjct: 121684 ccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctcttcaa 121743 Query: 556 acatagcatgcctagcttccgcctctggtaagggcacaagaat 598 |||| ||||| |||||||| |||||||||||| |||||||| Sbjct: 121744 acatggcatgtctagcttcttgctctggtaagggaacaagaat 121786 Score = 115 bits (58), Expect = 2e-22 Identities = 109/126 (86%) Strand = Plus / Plus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 |||||| |||||||| ||||||||||| || || ||||||||| |||| ||||||||||| Sbjct: 120894 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 120953 Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370 |||||||||||||| || ||||| || || || ||||||| || ||| ||||||||||| Sbjct: 120954 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 121013 Query: 371 caactc 376 |||||| Sbjct: 121014 caactc 121019 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 599 acgtttttccaatcggcgtaacattgctgcgtctagttcccatgg 643 |||||| ||||| ||||| ||||||||||| || ||||||||||| Sbjct: 122508 acgtttctccaaacggcgcaacattgctgcatccagttcccatgg 122552
>ref|NM_191297.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1287 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 255 tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314 ||||| || ||||| || || ||||||||||| | ||||||||||||||| ||||||||| Sbjct: 1262 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1203 Query: 315 cgtgtattcctcagagcaagttcgat 340 | ||| ||||||| ||||| |||||| Sbjct: 1202 cttgtgttcctcaaagcaacttcgat 1177 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 552 tcaaacatagcatgcctagcttccgcctc 580 ||||||||||||||||| ||||| ||||| Sbjct: 965 tcaaacatagcatgccttgcttcagcctc 937
>dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA for katanin, complete cds, clone: 13YPG038 Length = 1375 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 255 tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314 ||||| || ||||| || || ||||||||||| | ||||||||||||||| ||||||||| Sbjct: 1213 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1154 Query: 315 cgtgtattcctcagagcaagttcgat 340 | ||| ||||||| ||||| |||||| Sbjct: 1153 cttgtgttcctcaaagcaacttcgat 1128 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 552 tcaaacatagcatgcctagcttccgcctc 580 ||||||||||||||||| ||||| ||||| Sbjct: 916 tcaaacatagcatgccttgcttcagcctc 888
>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1414_E05 Length = 105222 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 255 tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314 ||||| || ||||| || || ||||||||||| | ||||||||||||||| ||||||||| Sbjct: 82313 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 82254 Query: 315 cgtgtattcctcagagcaagttcgat 340 | ||| ||||||| ||||| |||||| Sbjct: 82253 cttgtgttcctcaaagcaacttcgat 82228 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 552 tcaaacatagcatgcctagcttccgcctc 580 ||||||||||||||||| ||||| ||||| Sbjct: 81891 tcaaacatagcatgccttgcttcagcctc 81863
>dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A04, full insert sequence Length = 2096 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 255 tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314 ||||| || ||||| || || ||||||||||| | ||||||||||||||| ||||||||| Sbjct: 1250 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1191 Query: 315 cgtgtattcctcagagcaagttcgat 340 | ||| ||||||| ||||| |||||| Sbjct: 1190 cttgtgttcctcaaagcaacttcgat 1165 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 552 tcaaacatagcatgcctagcttccgcctc 580 ||||||||||||||||| ||||| ||||| Sbjct: 953 tcaaacatagcatgccttgcttcagcctc 925
>dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098E22, full insert sequence Length = 1635 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 255 tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314 ||||| || ||||| || || ||||||||||| | ||||||||||||||| ||||||||| Sbjct: 1473 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1414 Query: 315 cgtgtattcctcagagcaagttcgat 340 | ||| ||||||| ||||| |||||| Sbjct: 1413 cttgtgttcctcaaagcaacttcgat 1388 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 552 tcaaacatagcatgcctagcttccgcctc 580 ||||||||||||||||| ||||| ||||| Sbjct: 1176 tcaaacatagcatgccttgcttcagcctc 1148
>dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C03, full insert sequence Length = 1393 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 255 tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314 ||||| || ||||| || || ||||||||||| | ||||||||||||||| ||||||||| Sbjct: 1231 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1172 Query: 315 cgtgtattcctcagagcaagttcgat 340 | ||| ||||||| ||||| |||||| Sbjct: 1171 cttgtgttcctcaaagcaacttcgat 1146 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 552 tcaaacatagcatgcctagcttccgcctc 580 ||||||||||||||||| ||||| ||||| Sbjct: 934 tcaaacatagcatgccttgcttcagcctc 906
>gb|BT018813.1| Zea mays clone EL01N0530F04.d mRNA sequence Length = 1691 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Minus Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310 ||||||||| || || || || |||||||||||||| | ||| ||||||||||| || || Sbjct: 1230 gacatggctaccgtagtcctggttgaacttctcatagcgatgcgcatggagatgtgctga 1171 Query: 311 cggcc 315 ||||| Sbjct: 1170 cggcc 1166
>gb|AY104519.1| Zea mays PCO113699 mRNA sequence Length = 1696 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 273 ttgaacttctcatatctatgtgcatggagatgagcagacggcc 315 |||||||||||||| | ||| ||||||||||| || ||||||| Sbjct: 1467 ttgaacttctcatagcgatgcgcatggagatgtgctgacggcc 1425
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence Length = 355714 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 388 tttcttcttgtctgccttctag 409 |||||||||||||||||||||| Sbjct: 230910 tttcttcttgtctgccttctag 230889
>gb|BT013896.1| Lycopersicon esculentum clone 132892R, mRNA sequence Length = 1601 Score = 44.1 bits (22), Expect = 0.56 Identities = 40/46 (86%) Strand = Plus / Minus Query: 253 catggctgccataatcttgattgaacttctcatatctatgtgcatg 298 ||||||||||||||||| ||||||||| || || ||| ||||||| Sbjct: 1230 catggctgccataatctgaattgaacttatcgtacctaggtgcatg 1185
>gb|BC087973.1| Xenopus tropicalis 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta), mRNA (cDNA clone MGC:107813 IMAGE:7021336), complete cds Length = 1607 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 374 ctcatcctctgggatttcttct 395 |||||||||||||||||||||| Sbjct: 964 ctcatcctctgggatttcttct 943
>ref|NM_001011265.1| Xenopus tropicalis 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) (agpat4), mRNA Length = 1607 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 374 ctcatcctctgggatttcttct 395 |||||||||||||||||||||| Sbjct: 964 ctcatcctctgggatttcttct 943
>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5' end of the Car10 gene for carbonic anhydrase 10 and one CpG island, complete sequence Length = 203449 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 atcttgattgaacttctcata 286 ||||||||||||||||||||| Sbjct: 158607 atcttgattgaacttctcata 158627
>emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chromosome 11, complete sequence Length = 215657 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 gagctggaaatacataaatga 98 ||||||||||||||||||||| Sbjct: 214692 gagctggaaatacataaatga 214672
>emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on chromosome 11 Contains a novel gene, the Nos2 gene for inducible macrophage nitric oxide synthase 2 and the 3' end of the Lgals9 gene for soluble galactose binding lectin 9, complete sequence Length = 178443 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 gagctggaaatacataaatga 98 ||||||||||||||||||||| Sbjct: 177409 gagctggaaatacataaatga 177429
>gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation syndrome protein (FMR1) gene, alternative splice products, complete cds; and pseudogene, complete sequence Length = 185775 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 ttcttcttgtctgccttcta 408 |||||||||||||||||||| Sbjct: 124103 ttcttcttgtctgccttcta 124122
>gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, complete sequence Length = 194020 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ctatgtgcatggagatgagc 307 |||||||||||||||||||| Sbjct: 92851 ctatgtgcatggagatgagc 92870
>ref|NM_138844.1| Rattus norvegicus unc-13 homolog D (C. elegans) (Unc13d), mRNA Length = 4018 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tctgccttctagaactgcca 417 |||||||||||||||||||| Sbjct: 3726 tctgccttctagaactgcca 3745
>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the Chd3 gene for chromodomain helicase DNA binding protein 3, five novel genes, the 3' end of the gene for a novel protein similar to dynein and four CpG islands, complete sequence Length = 165212 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 ttgcattgctgcctccttac 453 |||||||||||||||||||| Sbjct: 153552 ttgcattgctgcctccttac 153533
>emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chromosome 1 Contains the Eef1b2 gene for eukaryotic translation elongation factor 1 beta 2, the Ndufs1 gene for NADH dehydrogenase (ubiquinone) Fe-S protein 1 (Ndufs1), the Gpr1 gene for G-protein coupled receptor 1, the 5' end of a novel gene, two novel genes and two CpG islands, complete sequence Length = 138564 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tcatcctctgggatttcttc 394 |||||||||||||||||||| Sbjct: 94531 tcatcctctgggatttcttc 94550
>gb|AC149872.2| Xenopus tropicalis clone CH216-115D10, complete sequence Length = 194934 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 gctttagagatatatgctttagagatat 211 |||||| |||||||||||||| |||||| Sbjct: 52815 gctttatagatatatgctttatagatat 52842
>gb|AC023511.17| Homo sapiens 12 BAC RP11-776A13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175631 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tctatgtgcatggagatgag 306 |||||||||||||||||||| Sbjct: 22155 tctatgtgcatggagatgag 22136
>emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in linkage group 19, complete sequence Length = 156150 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 acgaacactacagggtgcaa 136 |||||||||||||||||||| Sbjct: 142644 acgaacactacagggtgcaa 142625
>gb|AF547983.1| Schizosaccharomyces japonicus mitochondrial DNA, complete genome Length = 80059 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 aaatacataaatgataatta 104 |||||||||||||||||||| Sbjct: 24232 aaatacataaatgataatta 24213
>gb|AC120024.22| Homo sapiens chromosome 17, clone CTD-2526A2, complete sequence Length = 136002 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tctgccttctagaactgcca 417 |||||||||||||||||||| Sbjct: 83686 tctgccttctagaactgcca 83705
>gb|AF159356.1|AF159356 Rattus norvegicus Munc13-4 protein (Munc13-4) mRNA, complete cds Length = 4018 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tctgccttctagaactgcca 417 |||||||||||||||||||| Sbjct: 3726 tctgccttctagaactgcca 3745
>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence Length = 233829 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ctatgtgcatggagatgagc 307 |||||||||||||||||||| Sbjct: 148910 ctatgtgcatggagatgagc 148891
>emb|AL713898.9| Mouse DNA sequence from clone RP23-253D13 on chromosome X, complete sequence Length = 189001 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 atacataaatgataattatg 106 |||||||||||||||||||| Sbjct: 99072 atacataaatgataattatg 99091
>dbj|AP003778.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-384C21, complete sequences Length = 183146 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 tttcttcttgtctgccttct 407 |||||||||||||||||||| Sbjct: 124407 tttcttcttgtctgccttct 124388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,809,596 Number of Sequences: 3902068 Number of extensions: 4809596 Number of successful extensions: 84895 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84726 Number of HSP's gapped (non-prelim): 168 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)