ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3f23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_191983.1| Oryza sativa (japonica cultivar-group), predic... 319 6e-84
2dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 6e-84
3dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 6e-84
4dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 6e-84
5gb|AY107250.1| Zea mays PCO068082 mRNA sequence 165 2e-37
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
7dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
8dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
9ref|NM_191297.1| Oryza sativa (japonica cultivar-group), predic... 76 2e-10
10dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA for ... 76 2e-10
11dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
12dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
13dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
14dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-10
15gb|BT018813.1| Zea mays clone EL01N0530F04.d mRNA sequence 50 0.009
16gb|AY104519.1| Zea mays PCO113699 mRNA sequence 46 0.14
17gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 44 0.56
18gb|BT013896.1| Lycopersicon esculentum clone 132892R, mRNA sequence 44 0.56
19gb|BC087973.1| Xenopus tropicalis 1-acylglycerol-3-phosphate O-a... 44 0.56
20ref|NM_001011265.1| Xenopus tropicalis 1-acylglycerol-3-phosphat... 44 0.56
21emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chr... 42 2.2
22emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chr... 42 2.2
23emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on ch... 42 2.2
24gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation s... 40 8.8
25gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, compl... 40 8.8
26ref|NM_138844.1| Rattus norvegicus unc-13 homolog D (C. elegans)... 40 8.8
27emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chro... 40 8.8
28emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chr... 40 8.8
29gb|AC149872.2| Xenopus tropicalis clone CH216-115D10, complete s... 40 8.8
30gb|AC023511.17| Homo sapiens 12 BAC RP11-776A13 (Roswell Park Ca... 40 8.8
31emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in... 40 8.8
32gb|AF547983.1| Schizosaccharomyces japonicus mitochondrial DNA, ... 40 8.8
33gb|AC120024.22| Homo sapiens chromosome 17, clone CTD-2526A2, co... 40 8.8
34gb|AF159356.1|AF159356 Rattus norvegicus Munc13-4 protein (Munc1... 40 8.8
35gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome... 40 8.8
36emb|AL713898.9| Mouse DNA sequence from clone RP23-253D13 on chr... 40 8.8
37dbj|AP003778.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.8

>ref|NM_191983.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1236

 Score =  319 bits (161), Expect = 6e-84
 Identities = 335/393 (85%)
 Strand = Plus / Minus

                                                                        
Query: 251  gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
            |||||| |||||||| ||||||||||| || || ||||||||| |||| |||||||||||
Sbjct: 1227 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 1168

                                                                        
Query: 311  cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370
             |||||||||||||| || ||||| || || || ||||||| || ||| |||||||||||
Sbjct: 1167 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 1108

                                                                        
Query: 371  caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430
            |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| ||||||
Sbjct: 1107 caactcatcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaag 1048

                                                                        
Query: 431  tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490
             ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct: 1047 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 988

                                                                        
Query: 491  gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550
             |||||||||||| |||||||||| || | ||||||| |  ||    |||| | || |||
Sbjct: 987  tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 928

                                                                        
Query: 551  ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610
            ||||||||| ||||| ||||||||   |||||||||||| |||||||||||||| |||||
Sbjct: 927  ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 868

                                             
Query: 611  tcggcgtaacattgctgcgtctagttcccatgg 643
             ||||| ||||||||||| || |||||||||||
Sbjct: 867  acggcgcaacattgctgcatccagttcccatgg 835



to top

>dbj|AK069899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035A18, full
            insert sequence
          Length = 1676

 Score =  319 bits (161), Expect = 6e-84
 Identities = 335/393 (85%)
 Strand = Plus / Minus

                                                                        
Query: 251  gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
            |||||| |||||||| ||||||||||| || || ||||||||| |||| |||||||||||
Sbjct: 1352 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 1293

                                                                        
Query: 311  cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370
             |||||||||||||| || ||||| || || || ||||||| || ||| |||||||||||
Sbjct: 1292 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 1233

                                                                        
Query: 371  caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430
            |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| ||||||
Sbjct: 1232 caactcatcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaag 1173

                                                                        
Query: 431  tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490
             ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct: 1172 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 1113

                                                                        
Query: 491  gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550
             |||||||||||| |||||||||| || | ||||||| |  ||    |||| | || |||
Sbjct: 1112 tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 1053

                                                                        
Query: 551  ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610
            ||||||||| ||||| ||||||||   |||||||||||| |||||||||||||| |||||
Sbjct: 1052 ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 993

                                             
Query: 611  tcggcgtaacattgctgcgtctagttcccatgg 643
             ||||| ||||||||||| || |||||||||||
Sbjct: 992  acggcgcaacattgctgcatccagttcccatgg 960



to top

>dbj|AK065017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F15, full
            insert sequence
          Length = 1627

 Score =  319 bits (161), Expect = 6e-84
 Identities = 335/393 (85%)
 Strand = Plus / Minus

                                                                        
Query: 251  gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
            |||||| |||||||| ||||||||||| || || ||||||||| |||| |||||||||||
Sbjct: 1321 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 1262

                                                                        
Query: 311  cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370
             |||||||||||||| || ||||| || || || ||||||| || ||| |||||||||||
Sbjct: 1261 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 1202

                                                                        
Query: 371  caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430
            |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| ||||||
Sbjct: 1201 caactcatcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaag 1142

                                                                        
Query: 431  tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490
             ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct: 1141 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 1082

                                                                        
Query: 491  gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550
             |||||||||||| |||||||||| || | ||||||| |  ||    |||| | || |||
Sbjct: 1081 tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 1022

                                                                        
Query: 551  ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610
            ||||||||| ||||| ||||||||   |||||||||||| |||||||||||||| |||||
Sbjct: 1021 ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 962

                                             
Query: 611  tcggcgtaacattgctgcgtctagttcccatgg 643
             ||||| ||||||||||| || |||||||||||
Sbjct: 961  acggcgcaacattgctgcatccagttcccatgg 929



to top

>dbj|AK062045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A09, full
           insert sequence
          Length = 837

 Score =  319 bits (161), Expect = 6e-84
 Identities = 335/393 (85%)
 Strand = Plus / Minus

                                                                       
Query: 251 gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
           |||||| |||||||| ||||||||||| || || ||||||||| |||| |||||||||||
Sbjct: 529 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 470

                                                                       
Query: 311 cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370
            |||||||||||||| || ||||| || || || ||||||| || ||| |||||||||||
Sbjct: 469 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 410

                                                                       
Query: 371 caactcatcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaag 430
           |||||||||||| || | ||||||||| || ||||| ||||| | |||||||| ||||||
Sbjct: 409 caactcatcctcaggcacttcttcttgccttccttcaagaaccggcattaaccttctaag 350

                                                                       
Query: 431 tggttgcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggt 490
            ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct: 349 gggttgcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagt 290

                                                                       
Query: 491 gttctccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactc 550
            |||||||||||| |||||||||| || | ||||||| |  ||    |||| | || |||
Sbjct: 289 tttctccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctc 230

                                                                       
Query: 551 ttcaaacatagcatgcctagcttccgcctctggtaagggcacaagaatacgtttttccaa 610
           ||||||||| ||||| ||||||||   |||||||||||| |||||||||||||| |||||
Sbjct: 229 ttcaaacatggcatgtctagcttcttgctctggtaagggaacaagaatacgtttctccaa 170

                                            
Query: 611 tcggcgtaacattgctgcgtctagttcccatgg 643
            ||||| ||||||||||| || |||||||||||
Sbjct: 169 acggcgcaacattgctgcatccagttcccatgg 137



to top

>gb|AY107250.1| Zea mays PCO068082 mRNA sequence
          Length = 1198

 Score =  165 bits (83), Expect = 2e-37
 Identities = 173/203 (85%)
 Strand = Plus / Minus

                                                                        
Query: 399  ctgccttctagaactgccattaaccgtctaagtggttgcattgctgcctccttacaaaca 458
            |||||||| ||||||||||||| |||||| || || ||||||||||| ||||| || || 
Sbjct: 1194 ctgccttcaagaactgccattacccgtcttaggggctgcattgctgcttccttgcatacc 1135

                                                                        
Query: 459  aggcgtatatcagagccggaatatccttcggtgttctccacaagagcatcatatggaatc 518
            ||||| ||||||||||| ||||| ||||| || |||||||||||| ||||||| ||||||
Sbjct: 1134 aggcgaatatcagagccagaatacccttcagttttctccacaagaacatcatagggaatc 1075

                                                                        
Query: 519  tccattgtgtcttgagtcaatggaaggaactcttcaaacatagcatgcctagcttccgcc 578
            ||||||||| |  | ||  |||| |||| |||||||||||||||||| ||||| |||| |
Sbjct: 1074 tccattgtgccaggtgtatatggcaggagctcttcaaacatagcatgtctagcatccggc 1015

                                   
Query: 579  tctggtaagggcacaagaatacg 601
            ||||| || || |||||||||||
Sbjct: 1014 tctggcaatggaacaagaatacg 992



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 5e-35
 Identities = 187/223 (83%)
 Strand = Plus / Plus

                                                                            
Query: 376      catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 435
                ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| ||||
Sbjct: 27654270 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 27654329

                                                                            
Query: 436      gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 495
                ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || ||||
Sbjct: 27654330 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 27654389

                                                                            
Query: 496      ccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactcttcaa 555
                |||||||| |||||||||| || | ||||||| |  ||    |||| | || ||||||||
Sbjct: 27654390 ccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctcttcaa 27654449

                                                           
Query: 556      acatagcatgcctagcttccgcctctggtaagggcacaagaat 598
                |||| ||||| ||||||||   |||||||||||| ||||||||
Sbjct: 27654450 acatggcatgtctagcttcttgctctggtaagggaacaagaat 27654492



 Score =  115 bits (58), Expect = 2e-22
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                            
Query: 251      gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
                |||||| |||||||| ||||||||||| || || ||||||||| |||| |||||||||||
Sbjct: 27653600 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 27653659

                                                                            
Query: 311      cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370
                 |||||||||||||| || ||||| || || || ||||||| || ||| |||||||||||
Sbjct: 27653660 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 27653719

                      
Query: 371      caactc 376
                ||||||
Sbjct: 27653720 caactc 27653725



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                            
Query: 255      tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314
                ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 31804275 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 31804216

                                          
Query: 315      cgtgtattcctcagagcaagttcgat 340
                | ||| ||||||| ||||| ||||||
Sbjct: 31804215 cttgtgttcctcaaagcaacttcgat 31804190



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 599      acgtttttccaatcggcgtaacattgctgcgtctagttcccatgg 643
                |||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct: 27655214 acgtttctccaaacggcgcaacattgctgcatccagttcccatgg 27655258



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 552      tcaaacatagcatgcctagcttccgcctc 580
                ||||||||||||||||| ||||| |||||
Sbjct: 31803853 tcaaacatagcatgccttgcttcagcctc 31803825



to top

>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485G01
          Length = 167203

 Score =  157 bits (79), Expect = 5e-35
 Identities = 187/223 (83%)
 Strand = Plus / Plus

                                                                         
Query: 376   catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 435
             ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| ||||
Sbjct: 62836 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 62895

                                                                         
Query: 436   gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 495
             ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || ||||
Sbjct: 62896 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 62955

                                                                         
Query: 496   ccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactcttcaa 555
             |||||||| |||||||||| || | ||||||| |  ||    |||| | || ||||||||
Sbjct: 62956 ccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctcttcaa 63015

                                                        
Query: 556   acatagcatgcctagcttccgcctctggtaagggcacaagaat 598
             |||| ||||| ||||||||   |||||||||||| ||||||||
Sbjct: 63016 acatggcatgtctagcttcttgctctggtaagggaacaagaat 63058



 Score =  115 bits (58), Expect = 2e-22
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                         
Query: 251   gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
             |||||| |||||||| ||||||||||| || || ||||||||| |||| |||||||||||
Sbjct: 62166 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 62225

                                                                         
Query: 311   cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370
              |||||||||||||| || ||||| || || || ||||||| || ||| |||||||||||
Sbjct: 62226 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 62285

                   
Query: 371   caactc 376
             ||||||
Sbjct: 62286 caactc 62291



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 599   acgtttttccaatcggcgtaacattgctgcgtctagttcccatgg 643
             |||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct: 63780 acgtttctccaaacggcgcaacattgctgcatccagttcccatgg 63824



to top

>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0007F06
          Length = 150817

 Score =  157 bits (79), Expect = 5e-35
 Identities = 187/223 (83%)
 Strand = Plus / Plus

                                                                          
Query: 376    catcctctgggatttcttcttgtctgccttctagaactgccattaaccgtctaagtggtt 435
              ||||||| || | ||||||||| || ||||| ||||| | |||||||| |||||| ||||
Sbjct: 121564 catcctcaggcacttcttcttgccttccttcaagaaccgacattaaccttctaaggggtt 121623

                                                                          
Query: 436    gcattgctgcctccttacaaacaaggcgtatatcagagccggaatatccttcggtgttct 495
              ||||||| |||||||| || |||||||||||||||||||| ||||||||||| || ||||
Sbjct: 121624 gcattgccgcctccttgcacacaaggcgtatatcagagcctgaatatccttcagttttct 121683

                                                                          
Query: 496    ccacaagagcatcatatggaatctccattgtgtcttgagtcaatggaaggaactcttcaa 555
              |||||||| |||||||||| || | ||||||| |  ||    |||| | || ||||||||
Sbjct: 121684 ccacaagaacatcatatgggatattcattgtgccaggaacagatggcaagagctcttcaa 121743

                                                         
Query: 556    acatagcatgcctagcttccgcctctggtaagggcacaagaat 598
              |||| ||||| ||||||||   |||||||||||| ||||||||
Sbjct: 121744 acatggcatgtctagcttcttgctctggtaagggaacaagaat 121786



 Score =  115 bits (58), Expect = 2e-22
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                          
Query: 251    gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
              |||||| |||||||| ||||||||||| || || ||||||||| |||| |||||||||||
Sbjct: 120894 gacatgactgccatagtcttgattgaatttttcgtatctatgtacatgaagatgagcaga 120953

                                                                          
Query: 311    cggccgtgtattcctcagagcaagttcgatatcctctgtcgctattgggccaacttcagg 370
               |||||||||||||| || ||||| || || || ||||||| || ||| |||||||||||
Sbjct: 120954 tggccgtgtattccttagtgcaagctcaatgtcttctgtcgttactggaccaacttcagg 121013

                    
Query: 371    caactc 376
              ||||||
Sbjct: 121014 caactc 121019



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 599    acgtttttccaatcggcgtaacattgctgcgtctagttcccatgg 643
              |||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct: 122508 acgtttctccaaacggcgcaacattgctgcatccagttcccatgg 122552



to top

>ref|NM_191297.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1287

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1262 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1203

                                      
Query: 315  cgtgtattcctcagagcaagttcgat 340
            | ||| ||||||| ||||| ||||||
Sbjct: 1202 cttgtgttcctcaaagcaacttcgat 1177



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 552 tcaaacatagcatgcctagcttccgcctc 580
           ||||||||||||||||| ||||| |||||
Sbjct: 965 tcaaacatagcatgccttgcttcagcctc 937



to top

>dbj|AB110177.1| Oryza sativa (japonica cultivar-group) mRNA for katanin, complete
            cds, clone: 13YPG038
          Length = 1375

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1213 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1154

                                      
Query: 315  cgtgtattcctcagagcaagttcgat 340
            | ||| ||||||| ||||| ||||||
Sbjct: 1153 cttgtgttcctcaaagcaacttcgat 1128



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 552 tcaaacatagcatgcctagcttccgcctc 580
           ||||||||||||||||| ||||| |||||
Sbjct: 916 tcaaacatagcatgccttgcttcagcctc 888



to top

>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1414_E05
          Length = 105222

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                         
Query: 255   tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314
             ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 82313 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 82254

                                       
Query: 315   cgtgtattcctcagagcaagttcgat 340
             | ||| ||||||| ||||| ||||||
Sbjct: 82253 cttgtgttcctcaaagcaacttcgat 82228



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 552   tcaaacatagcatgcctagcttccgcctc 580
             ||||||||||||||||| ||||| |||||
Sbjct: 81891 tcaaacatagcatgccttgcttcagcctc 81863



to top

>dbj|AK105474.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A04, full
            insert sequence
          Length = 2096

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1250 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1191

                                      
Query: 315  cgtgtattcctcagagcaagttcgat 340
            | ||| ||||||| ||||| ||||||
Sbjct: 1190 cttgtgttcctcaaagcaacttcgat 1165



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 552 tcaaacatagcatgcctagcttccgcctc 580
           ||||||||||||||||| ||||| |||||
Sbjct: 953 tcaaacatagcatgccttgcttcagcctc 925



to top

>dbj|AK102585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098E22, full
            insert sequence
          Length = 1635

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1473 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1414

                                      
Query: 315  cgtgtattcctcagagcaagttcgat 340
            | ||| ||||||| ||||| ||||||
Sbjct: 1413 cttgtgttcctcaaagcaacttcgat 1388



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 552  tcaaacatagcatgcctagcttccgcctc 580
            ||||||||||||||||| ||||| |||||
Sbjct: 1176 tcaaacatagcatgccttgcttcagcctc 1148



to top

>dbj|AK058626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C03, full
            insert sequence
          Length = 1393

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                        
Query: 255  tggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcagacggc 314
            ||||| || ||||| || || ||||||||||| | ||||||||||||||| |||||||||
Sbjct: 1231 tggcttccgtaatcctggttaaacttctcatagcgatgtgcatggagatgcgcagacggc 1172

                                      
Query: 315  cgtgtattcctcagagcaagttcgat 340
            | ||| ||||||| ||||| ||||||
Sbjct: 1171 cttgtgttcctcaaagcaacttcgat 1146



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 552 tcaaacatagcatgcctagcttccgcctc 580
           ||||||||||||||||| ||||| |||||
Sbjct: 934 tcaaacatagcatgccttgcttcagcctc 906



to top

>gb|BT018813.1| Zea mays clone EL01N0530F04.d mRNA sequence
          Length = 1691

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 251  gacatggctgccataatcttgattgaacttctcatatctatgtgcatggagatgagcaga 310
            ||||||||| || || || || |||||||||||||| | ||| ||||||||||| || ||
Sbjct: 1230 gacatggctaccgtagtcctggttgaacttctcatagcgatgcgcatggagatgtgctga 1171

                 
Query: 311  cggcc 315
            |||||
Sbjct: 1170 cggcc 1166



to top

>gb|AY104519.1| Zea mays PCO113699 mRNA sequence
          Length = 1696

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 273  ttgaacttctcatatctatgtgcatggagatgagcagacggcc 315
            |||||||||||||| | ||| ||||||||||| || |||||||
Sbjct: 1467 ttgaacttctcatagcgatgcgcatggagatgtgctgacggcc 1425



to top

>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 388    tttcttcttgtctgccttctag 409
              ||||||||||||||||||||||
Sbjct: 230910 tttcttcttgtctgccttctag 230889



to top

>gb|BT013896.1| Lycopersicon esculentum clone 132892R, mRNA sequence
          Length = 1601

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 253  catggctgccataatcttgattgaacttctcatatctatgtgcatg 298
            |||||||||||||||||  ||||||||| || || ||| |||||||
Sbjct: 1230 catggctgccataatctgaattgaacttatcgtacctaggtgcatg 1185



to top

>gb|BC087973.1| Xenopus tropicalis 1-acylglycerol-3-phosphate O-acyltransferase 4
           (lysophosphatidic acid acyltransferase, delta), mRNA
           (cDNA clone MGC:107813 IMAGE:7021336), complete cds
          Length = 1607

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 374 ctcatcctctgggatttcttct 395
           ||||||||||||||||||||||
Sbjct: 964 ctcatcctctgggatttcttct 943



to top

>ref|NM_001011265.1| Xenopus tropicalis 1-acylglycerol-3-phosphate O-acyltransferase 4
           (lysophosphatidic acid acyltransferase, delta) (agpat4),
           mRNA
          Length = 1607

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 374 ctcatcctctgggatttcttct 395
           ||||||||||||||||||||||
Sbjct: 964 ctcatcctctgggatttcttct 943



to top

>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5'
              end of the Car10 gene for carbonic anhydrase 10 and one CpG
              island, complete sequence
          Length = 203449

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 266    atcttgattgaacttctcata 286
              |||||||||||||||||||||
Sbjct: 158607 atcttgattgaacttctcata 158627



to top

>emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chromosome 11, complete
              sequence
          Length = 215657

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 78     gagctggaaatacataaatga 98
              |||||||||||||||||||||
Sbjct: 214692 gagctggaaatacataaatga 214672



to top

>emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on chromosome 11 Contains a
              novel gene, the Nos2 gene for inducible macrophage nitric
              oxide synthase 2 and the 3' end of the Lgals9 gene for
              soluble galactose binding lectin 9, complete sequence
          Length = 178443

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 78     gagctggaaatacataaatga 98
              |||||||||||||||||||||
Sbjct: 177409 gagctggaaatacataaatga 177429



to top

>gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation syndrome protein (FMR1) gene,
              alternative splice products, complete cds; and  pseudogene,
              complete sequence
          Length = 185775

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    ttcttcttgtctgccttcta 408
              ||||||||||||||||||||
Sbjct: 124103 ttcttcttgtctgccttcta 124122



to top

>gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, complete sequence
          Length = 194020

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   ctatgtgcatggagatgagc 307
             ||||||||||||||||||||
Sbjct: 92851 ctatgtgcatggagatgagc 92870



to top

>ref|NM_138844.1| Rattus norvegicus unc-13 homolog D (C. elegans) (Unc13d), mRNA
          Length = 4018

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  tctgccttctagaactgcca 417
            ||||||||||||||||||||
Sbjct: 3726 tctgccttctagaactgcca 3745



to top

>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the
              Chd3 gene for chromodomain helicase DNA binding protein 3,
              five novel genes, the 3' end of the gene for a novel
              protein similar to dynein and four CpG islands, complete
              sequence
          Length = 165212

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 434    ttgcattgctgcctccttac 453
              ||||||||||||||||||||
Sbjct: 153552 ttgcattgctgcctccttac 153533



to top

>emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chromosome 1 Contains the
             Eef1b2 gene for eukaryotic translation elongation factor 1
             beta 2, the Ndufs1 gene for NADH dehydrogenase
             (ubiquinone) Fe-S protein 1 (Ndufs1), the Gpr1 gene for
             G-protein coupled receptor 1, the 5' end of a novel gene,
             two novel genes and two CpG islands, complete sequence
          Length = 138564

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tcatcctctgggatttcttc 394
             ||||||||||||||||||||
Sbjct: 94531 tcatcctctgggatttcttc 94550



to top

>gb|AC149872.2| Xenopus tropicalis clone CH216-115D10, complete sequence
          Length = 194934

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 184   gctttagagatatatgctttagagatat 211
             |||||| |||||||||||||| ||||||
Sbjct: 52815 gctttatagatatatgctttatagatat 52842



to top

>gb|AC023511.17| Homo sapiens 12 BAC RP11-776A13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 175631

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   tctatgtgcatggagatgag 306
             ||||||||||||||||||||
Sbjct: 22155 tctatgtgcatggagatgag 22136



to top

>emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in linkage group 19,
              complete sequence
          Length = 156150

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    acgaacactacagggtgcaa 136
              ||||||||||||||||||||
Sbjct: 142644 acgaacactacagggtgcaa 142625



to top

>gb|AF547983.1| Schizosaccharomyces japonicus mitochondrial DNA, complete genome
          Length = 80059

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    aaatacataaatgataatta 104
             ||||||||||||||||||||
Sbjct: 24232 aaatacataaatgataatta 24213



to top

>gb|AC120024.22| Homo sapiens chromosome 17, clone CTD-2526A2, complete sequence
          Length = 136002

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tctgccttctagaactgcca 417
             ||||||||||||||||||||
Sbjct: 83686 tctgccttctagaactgcca 83705



to top

>gb|AF159356.1|AF159356 Rattus norvegicus Munc13-4 protein (Munc13-4) mRNA, complete cds
          Length = 4018

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  tctgccttctagaactgcca 417
            ||||||||||||||||||||
Sbjct: 3726 tctgccttctagaactgcca 3745



to top

>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence
          Length = 233829

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    ctatgtgcatggagatgagc 307
              ||||||||||||||||||||
Sbjct: 148910 ctatgtgcatggagatgagc 148891



to top

>emb|AL713898.9| Mouse DNA sequence from clone RP23-253D13 on chromosome X, complete
             sequence
          Length = 189001

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    atacataaatgataattatg 106
             ||||||||||||||||||||
Sbjct: 99072 atacataaatgataattatg 99091



to top

>dbj|AP003778.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-384C21, complete
              sequences
          Length = 183146

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    tttcttcttgtctgccttct 407
              ||||||||||||||||||||
Sbjct: 124407 tttcttcttgtctgccttct 124388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,809,596
Number of Sequences: 3902068
Number of extensions: 4809596
Number of successful extensions: 84895
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84726
Number of HSP's gapped (non-prelim): 168
length of query: 643
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 620
effective length of database: 17,143,297,704
effective search space: 10628844576480
effective search space used: 10628844576480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top