ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 pr... 66 4e-11
2SYI_BUCAP (Q8K9Z2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 30 3.1
3SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 4.1
4SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 4.1
5SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 4.1
6PEPA1_RABIT (P28712) Pepsin II-1 precursor (EC 3.4.23.1) (Pepsin A) 29 5.3
7SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 5.3
8EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2... 29 6.9
9CLC14_MOUSE (Q8VCP9) C-type lectin domain family 14 member A pre... 29 6.9
10UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 6.9
11RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... 28 9.1
12PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A) 28 9.1
13PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Peps... 28 9.1
14SYL_MYCTU (P67510) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 9.1
15SYL_MYCBO (P67511) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 9.1

>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = -2

Query: 471 NVGSSIGDGLRSLEEEIGPASPQENLYLQHNF 376
           NVGSSIGDGLRSLEEEI PASPQENLYLQHNF
Sbjct: 870 NVGSSIGDGLRSLEEEIAPASPQENLYLQHNF 901



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>SYI_BUCAP (Q8K9Z2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 938

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 1   LAKYYASLQAKHTPQSEKML-NTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHS 177
           L K   S++A  + +  K+L N  D N+  + R+    K    LH    Y  G I+ GH+
Sbjct: 10  LPKTQFSMRANLSQKEPKILKNWYDNNLYKLIRQKKEGKKIFFLHDGPPYANGNIHIGHA 69

Query: 178 TYK 186
             K
Sbjct: 70  VNK 72



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>SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 375 RSCAASTGSPVETPAQSLPPVTADHLL 455
           R  AA TG+P+  PA    PVT DH L
Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203



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>SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 375 RSCAASTGSPVETPAQSLPPVTADHLL 455
           R  AA TG+P+  PA    PVT DH L
Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203



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>SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 375 RSCAASTGSPVETPAQSLPPVTADHLL 455
           R  AA TG+P+  PA    PVT DH L
Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203



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>PEPA1_RABIT (P28712) Pepsin II-1 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = +1

Query: 13  YASLQAKH-TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHS 177
           Y S+ A   TP  + M N   V E++  +   +N  K +  +   + +SY TG +N    
Sbjct: 186 YPSISASDATPVFDNMWNEGLVSEDLFSVYLSSNGEKGSMVMFGGIDSSYYTGSLNWVPV 245

Query: 178 TYKYKWQL*DDRINLQRNASRC*KSFQYVLYIARSSL 288
           +++  WQ+  D I +      C  S Q V+    S L
Sbjct: 246 SHEGYWQITMDSITINGETIACADSCQAVVDTGTSLL 282



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>SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 935

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 28  AKHTPQSEKMLNTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 186
           AK  P   K  N  D+N+    R+T+  K T  LH    Y  G ++ GH+  K
Sbjct: 22  AKREPAMLK--NWYDKNLYQQIRQTSKGKKTFILHDGPPYANGNLHLGHAVNK 72



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>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)|
           (Exo-1,3-beta-glucanase)
          Length = 429

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 49  EKMLNTVDENIMLICRETNNRKTTTHLHVSASYRTGLINC 168
           E++  T+DE+I ++C +     T  H +V   +   L +C
Sbjct: 285 EEVGRTIDEHISVVCEQGKETLTEAHWNVVGEWSAALTDC 324



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>CLC14_MOUSE (Q8VCP9) C-type lectin domain family 14 member A precursor|
          Length = 459

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 155 PVL*LADTCKCVVVFLLLVSLQISIIFSSTVLSIFSLC 42
           PV    DT   VV  L+ +++ + ++ + TVL +F LC
Sbjct: 376 PVSLTFDTSSTVVFILVSIAVIVLVVLTITVLGLFKLC 413



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>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 262

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 362 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 207
           +  E+++ V R   + R+ + LLW     +L    TYW DF  ++  L R IRS
Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252



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>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
           (Helicase-like protein NHL)
          Length = 1400

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 242 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 126
           HL+  LCR   +S +CH Y  VE      +L SP+L + D  K
Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199



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>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
 Frame = +1

Query: 37  TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 204
           TP  + M N   V +++  +   +++ K +  +   + +SY TG +N    +Y+  WQ+ 
Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254

Query: 205 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 357
            D +++      C  S Q +       L    S++ N QS    S NL  + V   SA
Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312



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>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
 Frame = +1

Query: 37  TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 204
           TP  + M N   V +++  +   +++ K +  +   + +SY TG +N    +Y+  WQ+ 
Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254

Query: 205 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 357
            D +++      C  S Q +       L    S++ N QS    S NL  + V   SA
Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312



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>SYL_MYCTU (P67510) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 969

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 433 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 308
           GGRDWA ++ GE   V+    L+   D L  W P    VL+++ VT
Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256



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>SYL_MYCBO (P67511) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 969

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 433 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 308
           GGRDWA ++ GE   V+    L+   D L  W P    VL+++ VT
Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,423,681
Number of Sequences: 219361
Number of extensions: 1416464
Number of successful extensions: 3926
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3926
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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