ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107457.1| Zea mays PCO103582 mRNA sequence 339 6e-90
2ref|XM_468939.1| Oryza sativa (japonica cultivar-group), mRNA 333 4e-88
3dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 4e-88
4dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 4e-88
5dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 4e-88
6gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence 256 7e-65
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 244 3e-61
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 244 3e-61
9gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genom... 244 3e-61
10gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genom... 244 3e-61
11ref|NM_128939.3| Arabidopsis thaliana structural constituent of ... 68 4e-08
12gb|AY093289.1| Arabidopsis thaliana 30S ribosomal protein S5 (At... 68 4e-08
13gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TE... 68 4e-08
14gb|AY054523.1| Arabidopsis thaliana 30S ribosomal protein S5 (At... 68 4e-08
15emb|BX819190.1|CNS0A84J Arabidopsis thaliana Full-length cDNA Co... 68 4e-08
16gb|AY087734.1| Arabidopsis thaliana clone 38063 mRNA, complete s... 68 4e-08
17dbj|AK220909.1| Arabidopsis thaliana mRNA for 30S ribosomal prot... 54 5e-04
18emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in ... 48 0.034
19ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.53
20gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence 42 2.1
21emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chro... 42 2.1
22gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence 40 8.2
23gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map... 40 8.2
24gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence 40 8.2
25emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in ... 40 8.2
26emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, comple... 40 8.2
27ref|XM_948126.1| Theileria annulata strain Ankara hypothetical p... 40 8.2
28emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chr... 40 8.2
29gb|AC117444.6| Homo sapiens 3 BAC RP11-215L17 (Roswell Park Canc... 40 8.2
30gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, co... 40 8.2
31gb|AC113223.3| Homo sapiens X BAC RP13-597O16 (Roswell Park Canc... 40 8.2
32gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park ... 40 8.2
33emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 i... 40 8.2
34gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, c... 40 8.2
35emb|AL928727.8| Zebrafish DNA sequence from clone CH211-130P8 in... 40 8.2
36emb|CT737307.2| CH251-89L9, complete sequence 40 8.2
37gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, comple... 40 8.2
38gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complet... 40 8.2
39emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, com... 40 8.2
40emb|AL929141.7| Zebrafish DNA sequence from clone CH211-149P5 in... 40 8.2 
>gb|AY107457.1| Zea mays PCO103582 mRNA sequence
          Length = 840

 Score =  339 bits (171), Expect = 6e-90
 Identities = 322/373 (86%)
 Strand = Plus / Minus

                                                                       
Query: 232 atcatttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtc 291
           |||||||||| | ||||||||| ||||   |||||||  |||| |||||   ||||||  
Sbjct: 576 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 517

                                                                       
Query: 292 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 351
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 516 tcatcatctgcgtcgccttgatagtggctcgagcgttgttcagggggttcttgctgcgca 457

                                                                       
Query: 352 gctgcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccac 411
           ||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 456 gctgcttgcccagagcattttcaacaccagccatctccagcacaaccctcacggctccac 397

                                                                       
Query: 412 ctgcagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 471
           | ||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 396 cagcaatgacaccagatccagggcaagcaggcctcagcatcaccttggctgctccatagt 337

                                                                       
Query: 472 tcgcctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgc 531
            ||| ||||||||||||||||| ||| ||||||| ||||| |||||||| || || ||||
Sbjct: 336 ccgcatcagctctgtgcgggaatgtggagtacttagttagcggcactgtgacaaggttgc 277

                                                                       
Query: 532 ggcggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgc 591
           | |||||||||||||| ||||||||||||||||| | ||| || |||||||| || ||||
Sbjct: 276 gccggccgttcatggcggccttggtgatggcctccgtgacctcgttggcctttcccacgc 217

                        
Query: 592 caacaccaacgtg 604
           | |||||||||||
Sbjct: 216 cgacaccaacgtg 204
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>ref|XM_468939.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 981

 Score =  333 bits (168), Expect = 4e-88
 Identities = 319/370 (86%)
 Strand = Plus / Minus

                                                                       
Query: 235 atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
           ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 979 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 920

                                                                       
Query: 295 tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
           |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 919 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 860

                                                                       
Query: 355 gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
           | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 859 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 800

                                                                       
Query: 415 cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 474
           || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 799 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 740

                                                                       
Query: 475 cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 534
           | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 739 catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 680

                                                                       
Query: 535 ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 594
           ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 679 ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 620

                     
Query: 595 caccaacgtg 604
           |||| |||||
Sbjct: 619 caccgacgtg 610
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>dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-G07, full
            insert sequence
          Length = 1281

 Score =  333 bits (168), Expect = 4e-88
 Identities = 319/370 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
            ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 1028 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 969

                                                                        
Query: 295  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 968  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 909

                                                                        
Query: 355  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 908  gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 849

                                                                        
Query: 415  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 474
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 848  caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 789

                                                                        
Query: 475  cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 534
            | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 788  catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 729

                                                                        
Query: 535  ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 594
            ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 728  ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 669

                      
Query: 595  caccaacgtg 604
            |||| |||||
Sbjct: 668  caccgacgtg 659
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>dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042D13, full
            insert sequence
          Length = 1296

 Score =  333 bits (168), Expect = 4e-88
 Identities = 319/370 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
            ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 1034 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 975

                                                                        
Query: 295  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 974  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 915

                                                                        
Query: 355  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 914  gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 855

                                                                        
Query: 415  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 474
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 854  caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 795

                                                                        
Query: 475  cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 534
            | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 794  catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 735

                                                                        
Query: 535  ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 594
            ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 734  ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 675

                      
Query: 595  caccaacgtg 604
            |||| |||||
Sbjct: 674  caccgacgtg 665
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>dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H10, full
            insert sequence
          Length = 1201

 Score =  333 bits (168), Expect = 4e-88
 Identities = 319/370 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
            ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 1038 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 979

                                                                        
Query: 295  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 978  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 919

                                                                        
Query: 355  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 918  gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 859

                                                                        
Query: 415  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagttcg 474
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||  |
Sbjct: 858  caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagtctg 799

                                                                        
Query: 475  cctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgcggc 534
            | || ||||| |||||||| ||  | |||||||| || ||||| || ||||||||||| |
Sbjct: 798  catctgctctatgcgggaaggtcgaatacttggtgagcggcacggtgacgagattgcgac 739

                                                                        
Query: 535  ggccgttcatggcagccttggtgatggcctctgagacttctttggccttgccgacgccaa 594
            ||||||||||||| ||||||||||||||||| | ||| || ||||||||||| ||||| |
Sbjct: 738  ggccgttcatggcggccttggtgatggcctcggtgacctccttggccttgccaacgccca 679

                      
Query: 595  caccaacgtg 604
            |||| |||||
Sbjct: 678  caccgacgtg 669
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>gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence
          Length = 584

 Score =  256 bits (129), Expect = 7e-65
 Identities = 262/307 (85%)
 Strand = Plus / Plus

                                                                       
Query: 232 atcatttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtc 291
           |||||||||| | ||||||||| ||||   |||||||  |||| |||||   ||||||  
Sbjct: 272 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 331

                                                                       
Query: 292 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 351
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 332 tcatcatctgcgtcgccttgatagtggctcgggcgttgttcagggggttcttgctgcgca 391

                                                                       
Query: 352 gctgcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccac 411
           ||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 392 gctgcttgcccagagcattttcaacaccagccatctccaacacaaccctcacagctccac 451

                                                                       
Query: 412 ctgcagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 471
           | ||| | |||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct: 452 cagcaataacaccagatccagggcaagcaggcctcaacatcaccttggctgctccatagt 511

                                                                       
Query: 472 tcgcctcagctctgtgcgggaaagtgcagtacttggttagtggcactgtaacgagattgc 531
            ||| ||||||||||||||||| ||| ||||||| ||||| |||||||| || || ||||
Sbjct: 512 ccgcatcagctctgtgcgggaatgtggagtacttagttagcggcactgtgacaaggttgc 571

                  
Query: 532 ggcggcc 538
           | |||||
Sbjct: 572 gccggcc 578
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  244 bits (123), Expect = 3e-61
 Identities = 208/237 (87%)
 Strand = Plus / Plus

                                                                            
Query: 235      atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
                ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 19225001 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19225060

                                                                            
Query: 295      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19225061 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19225120

                                                                            
Query: 355      gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
                | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 19225121 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 19225180

                                                                         
Query: 415      cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 471
                || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 19225181 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 19225237



 Score =  103 bits (52), Expect = 7e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                            
Query: 501      tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 560
                |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 19228045 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 19228104

                                                            
Query: 561      gcctctgagacttctttggccttgccgacgccaacaccaacgtg 604
                ||||| | ||| || ||||||||||| ||||| ||||| |||||
Sbjct: 19228105 gcctcggtgacctccttggccttgccaacgcccacaccgacgtg 19228148
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  244 bits (123), Expect = 3e-61
 Identities = 208/237 (87%)
 Strand = Plus / Plus

                                                                            
Query: 235      atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
                ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 19219042 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19219101

                                                                            
Query: 295      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19219102 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19219161

                                                                            
Query: 355      gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
                | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 19219162 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 19219221

                                                                         
Query: 415      cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 471
                || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 19219222 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 19219278



 Score =  103 bits (52), Expect = 7e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                            
Query: 501      tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 560
                |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 19222086 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 19222145

                                                            
Query: 561      gcctctgagacttctttggccttgccgacgccaacaccaacgtg 604
                ||||| | ||| || ||||||||||| ||||| ||||| |||||
Sbjct: 19222146 gcctcggtgacctccttggccttgccaacgcccacaccgacgtg 19222189
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>gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence,
            complete sequence
          Length = 140507

 Score =  244 bits (123), Expect = 3e-61
 Identities = 208/237 (87%)
 Strand = Plus / Plus

                                                                        
Query: 235  atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
            ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 9162 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 9221

                                                                        
Query: 295  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 9222 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 9281

                                                                        
Query: 355  gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
            | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 9282 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 9341

                                                                     
Query: 415  cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 471
            || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 9342 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 9398



 Score =  103 bits (52), Expect = 7e-19
 Identities = 91/104 (87%)
 Strand = Plus / Plus

                                                                         
Query: 501   tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 560
             |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 12206 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 12265

                                                         
Query: 561   gcctctgagacttctttggccttgccgacgccaacaccaacgtg 604
             ||||| | ||| || ||||||||||| ||||| ||||| |||||
Sbjct: 12266 gcctcggtgacctccttggccttgccaacgcccacaccgacgtg 12309
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>gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genomic sequence, complete
             sequence
          Length = 150137

 Score =  244 bits (123), Expect = 3e-61
 Identities = 208/237 (87%)
 Strand = Plus / Minus

                                                                         
Query: 235   atttccataactcctccatcggaantncacgctctgcagccacatctgagaactgtctca 294
             ||||||||| || |||||| ||||   | ||||||||||| |||||   |||||| ||||
Sbjct: 18461 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 18402

                                                                         
Query: 295   tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 354
             |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 18401 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 18342

                                                                         
Query: 355   gcttcccaagagcattttcaactccagccatctccagcacaaccctcacagctccacctg 414
             | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 18341 gtttccccagagcattttcaaccccagccatctccagcacgaccctcacagctccacctg 18282

                                                                      
Query: 415   cagtgacaccagatccagggcaagcaggcctcagcatgaccttcgctgctccatagt 471
             || | |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 18281 caattacaccagatccagggcaagcaggcctcaacatgaccctggctgctccatagt 18225



 Score =  103 bits (52), Expect = 7e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                         
Query: 501   tacttggttagtggcactgtaacgagattgcggcggccgttcatggcagccttggtgatg 560
             |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct: 15417 tacttggtgagcggcacggtgacgagattgcgacggccgttcatggcggccttggtgatg 15358

                                                         
Query: 561   gcctctgagacttctttggccttgccgacgccaacaccaacgtg 604
             ||||| | ||| || ||||||||||| ||||| ||||| |||||
Sbjct: 15357 gcctcggtgacctccttggccttgccaacgcccacaccgacgtg 15314
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>ref|NM_128939.3| Arabidopsis thaliana structural constituent of ribosome AT2G33800
           mRNA, complete cds
          Length = 1143

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 324 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 383
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 899 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 840

                                                                       
Query: 384 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 443
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 839 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 780

                                     
Query: 444 ctcagcatgaccttcgctgctccata 469
           || ||||| ||||| |||||||||||
Sbjct: 779 ctaagcatcaccttggctgctccata 754
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>gb|AY093289.1| Arabidopsis thaliana 30S ribosomal protein S5 (At2g33800) mRNA,
           complete cds
          Length = 941

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 324 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 383
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 821 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 762

                                                                       
Query: 384 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 443
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 761 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 702

                                     
Query: 444 ctcagcatgaccttcgctgctccata 469
           || ||||| ||||| |||||||||||
Sbjct: 701 ctaagcatcaccttggctgctccata 676
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>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete
             sequence
          Length = 114144

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Plus

                                                                         
Query: 324   gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 383
             ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 54068 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 54127

                                                                         
Query: 384   atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 443
             ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 54128 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 54187

                                       
Query: 444   ctcagcatgaccttcgctgctccata 469
             || ||||| ||||| |||||||||||
Sbjct: 54188 ctaagcatcaccttggctgctccata 54213
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>gb|AY054523.1| Arabidopsis thaliana 30S ribosomal protein S5 (At2g33800; T1B8.10)
           mRNA, complete cds
          Length = 1096

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 324 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 383
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 894 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 835

                                                                       
Query: 384 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 443
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 834 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 775

                                     
Query: 444 ctcagcatgaccttcgctgctccata 469
           || ||||| ||||| |||||||||||
Sbjct: 774 ctaagcatcaccttggctgctccata 749
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>emb|BX819190.1|CNS0A84J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB55ZA10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1078

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 324 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 383
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 836 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 777

                                                                       
Query: 384 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 443
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 776 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 717

                                     
Query: 444 ctcagcatgaccttcgctgctccata 469
           || ||||| ||||| |||||||||||
Sbjct: 716 ctaagcatcaccttggctgctccata 691
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>gb|AY087734.1| Arabidopsis thaliana clone 38063 mRNA, complete sequence
          Length = 1082

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                       
Query: 324 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 383
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 899 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 840

                                                                       
Query: 384 atctccagcacaaccctcacagctccacctgcagtgacaccagatccagggcaagcaggc 443
           ||||| ||||||| ||| || ||||| || ||| | |||||||  || ||  ||||||| 
Sbjct: 839 atctctagcacaatcctaaccgctcctccagcaatcacaccagtacctggtgaagcaggt 780

                                     
Query: 444 ctcagcatgaccttcgctgctccata 469
           || ||||| ||||| |||||||||||
Sbjct: 779 ctaagcatcaccttggctgctccata 754
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>dbj|AK220909.1| Arabidopsis thaliana mRNA for 30S ribosomal protein S5, complete
           cds, clone: RAFL22-47-G14
          Length = 326

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                       
Query: 324 gcattgttgagaggattcttgcttcgcagctgcttcccaagagcattttcaactccagcc 383
           ||||||||||||| ||| |||||||  ||||| ||||| |  ||||| || ||||| |||
Sbjct: 115 gcattgttgagagcattgttgcttccaagctgtttccccaatgcattctcgactcctgcc 56

                                                      
Query: 384 atctccagcacaaccctcacagctccacctgcagtgacaccag 426
           ||||| ||||||| ||| || ||||| || ||| | |||||||
Sbjct: 55  atctctagcacaatcctaaccgctcctccagcaatcacaccag 13
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>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5,
             complete sequence
          Length = 190731

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 235   atttccataactcctccatcggaa 258
             ||||||||||||||||||||||||
Sbjct: 57705 atttccataactcctccatcggaa 57682
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>ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000305.01.0)
            partial mRNA
          Length = 2391

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 220  tgattttgtttcatcatttcca 241
            ||||||||||||||||||||||
Sbjct: 1296 tgattttgtttcatcatttcca 1275
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>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence
          Length = 175949

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 267   tctgcagccacatctgagaac 287
             |||||||||||||||||||||
Sbjct: 66674 tctgcagccacatctgagaac 66694
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>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete
             sequence
          Length = 201549

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   aatgattttgtttcatcattt 238
             |||||||||||||||||||||
Sbjct: 34394 aatgattttgtttcatcattt 34374
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>gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 aatatatagatacaacagga 163
           ||||||||||||||||||||
Sbjct: 543 aatatatagatacaacagga 524
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>gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map human ortholog p21.3,
             complete sequence
          Length = 194447

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   gcttcccaagagcattttca 374
             ||||||||||||||||||||
Sbjct: 51984 gcttcccaagagcattttca 52003
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>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence
          Length = 165269

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 212   cagtttaatgattttgtttcatcatttc 239
             ||||||| |||||||| |||||||||||
Sbjct: 88282 cagtttagtgattttgcttcatcatttc 88309
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>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3,
             complete sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 212   cagtttaatgattttgtttcatcatttc 239
             ||||||| |||||||| |||||||||||
Sbjct: 99499 cagtttagtgattttgcttcatcatttc 99472
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>emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, complete sequence
          Length = 38779

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agtttaatgattttgtttca 232
             ||||||||||||||||||||
Sbjct: 15035 agtttaatgattttgtttca 15054
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>ref|XM_948126.1| Theileria annulata strain Ankara hypothetical protein (TA09090)
            partial mRNA
          Length = 1365

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 219  atgattttgtttcatcatttccat 242
            |||| |||||||||||||||||||
Sbjct: 1115 atgaatttgtttcatcatttccat 1138
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>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete
             sequence
          Length = 108373

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   tgcttcgcagctgcttccca 362
             ||||||||||||||||||||
Sbjct: 22518 tgcttcgcagctgcttccca 22537
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>gb|AC117444.6| Homo sapiens 3 BAC RP11-215L17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104853

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   gcattttcaactccagccat 385
             ||||||||||||||||||||
Sbjct: 17575 gcattttcaactccagccat 17594
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>gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, complete sequence
          Length = 143552

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ggcaagcaggcctcagcatg 452
              ||||||||||||||||||||
Sbjct: 141797 ggcaagcaggcctcagcatg 141778
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>gb|AC113223.3| Homo sapiens X BAC RP13-597O16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165785

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    gcttcccaagagcattttca 374
              ||||||||||||||||||||
Sbjct: 130967 gcttcccaagagcattttca 130986
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>gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park PAC library) complete
              sequence
          Length = 148600

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    gcttcccaagagcattttca 374
              ||||||||||||||||||||
Sbjct: 139679 gcttcccaagagcattttca 139660
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>emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 in linkage group 3,
              complete sequence
          Length = 184845

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 212    cagtttaatgattttgtttcatcatttc 239
              ||||||| |||||||| |||||||||||
Sbjct: 168995 cagtttagtgattttgcttcatcatttc 168968
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>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ggcaagcaggcctcagcatg 452
             ||||||||||||||||||||
Sbjct: 44716 ggcaagcaggcctcagcatg 44697
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>emb|AL928727.8| Zebrafish DNA sequence from clone CH211-130P8 in linkage group 5,
              complete sequence
          Length = 172861

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 235    atttccataactcctccatcggaa 258
              ||||||||| ||||||||||||||
Sbjct: 129015 atttccatatctcctccatcggaa 129038
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>emb|CT737307.2| CH251-89L9, complete sequence
          Length = 180080

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   gcttcccaagagcattttca 374
             ||||||||||||||||||||
Sbjct: 56465 gcttcccaagagcattttca 56446
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>gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, complete sequence
          Length = 160574

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 220   tgattttgtttcatcatttccata 243
             |||||||||||||| |||||||||
Sbjct: 67725 tgattttgtttcataatttccata 67702
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>gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complete sequence
          Length = 148392

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 220    tgattttgtttcatcatttccata 243
              |||||||||||||| |||||||||
Sbjct: 143508 tgattttgtttcataatttccata 143485
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>emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, complete sequence
          Length = 210900

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   aatgattttgtttcatcatt 237
             ||||||||||||||||||||
Sbjct: 54435 aatgattttgtttcatcatt 54454
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>emb|AL929141.7| Zebrafish DNA sequence from clone CH211-149P5 in linkage group 18,
             complete sequence
          Length = 182116

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   tccagccatctccagcacaa 396
             ||||||||||||||||||||
Sbjct: 87295 tccagccatctccagcacaa 87314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,316,835
Number of Sequences: 3902068
Number of extensions: 5316835
Number of successful extensions: 101191
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101075
Number of HSP's gapped (non-prelim): 114
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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