>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent|
            regulator of chromatin subfamily A member 3-like 3 (EC
            3.6.1.-) (SMARCA3-like protein 3)
          Length = 1277

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 73   SWSSPAVFTCPICRCLLSNCQITS 144
            SW SP+   CPICR +L   ++ S
Sbjct: 1067 SWRSPSCGLCPICRTILKRTELIS 1090

>E310_ADE07 (P15134) Early E3B 10.4 kDa protein precursor|
          Length = 91

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 334 FNVAVCKFWSCRQA*QPLLLSVLLFGPFSLIVDAGDLACISCVCTIICSYVPIVERCVYL 155
           F + +C F  C         S    GPF+       + CI CVC+I+C  +   +   ++
Sbjct: 8   FTILICAFNVCATFTAVATASPDCIGPFASYALFAFVTCI-CVCSIVCLVINFFQLVDWI 66

Query: 154 VIR 146
            +R
Sbjct: 67  FVR 69

>E310_ADE03 (P11318) Early E3B 10.4 kDa protein precursor|
          Length = 91

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 334 FNVAVCKFWSCRQA*QPLLLSVLLFGPFSLIVDAGDLACISCVCTIICSYVPIVERCVYL 155
           F + +C F  C         S    GPF+       + CI CVC+I+C  +   +   ++
Sbjct: 8   FTILICPFNVCATFTAVATASPDCIGPFASYALFAFVTCI-CVCSIVCLVINFFQLVDWI 66

Query: 154 VIR 146
            +R
Sbjct: 67  FVR 69

>SWRI_SERLI (P52989) Autoinducer synthesis protein swrI|
          Length = 200

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 227 SRMHFMRLYHYLQLCTYCRALRLLSHPSEVI*QFDRRHLQIGQVKT 90
           S M F+ + +Y + C Y     ++SHP  +I  F R    I  VKT
Sbjct: 121 SAMLFLSMINYARNCGYEGIYAIISHPMRII--FQRSGWHISVVKT 164

>TRAC_ECOLI (P18004) Protein traC|
          Length = 875

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 340 TRFNVAVCKFWSCRQA*--QPLLLSVLLFGPFSLIVDAGD 227
           T +N+AVC      +    QPL+ SVL  G F+++ D GD
Sbjct: 478 TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGD 517

>NF1_HUMAN (P21359) Neurofibromin (Neurofibromatosis-related protein NF-1)|
           [Contains: Neurofibromin truncated]
          Length = 2839

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 198 MVQTHEMHARSPASTMRLKGPNSNTDSSSGC 290
           M   HE   R+P +++R    NS+ DS++GC
Sbjct: 643 MSMDHEELLRTPGASLRKGKGNSSMDSAAGC 673

>CHIC1_MOUSE (Q8CBW7) Cysteine-rich hydrophobic domain 1 protein (Brain X-linked|
           protein)
          Length = 227

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -3

Query: 343 PTRFNVAVCKFWSCRQA*QPLLLSVLLFGPFSLIVDAGDLACISCVCTIICSYVPIVERC 164
           P  F  ++ +  SC +   P+ +  LL G            C+ C CT+ CS  P++  C
Sbjct: 123 PEEFKTSIGRVNSCLKKALPVNVKWLLCG------------CLCCCCTLGCSLWPVI--C 168

Query: 163 VYLVIRRKL 137
           +    RR +
Sbjct: 169 LNKRTRRSI 177

>TCEA3_HUMAN (O75764) Transcription elongation factor A protein 3 (Transcription|
           elongation factor S-II protein 3) (Transcription
           elongation factor TFIIS.h)
          Length = 348

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 46  SYNRARSPGSWSSPAVFTCPICRCLLSNCQITSD 147
           S ++A SP + SSP   T     CLL+ C +T D
Sbjct: 152 SKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGD 185

>CHIC2_MOUSE (Q9D9G3) Cysteine-rich hydrophobic domain 2 protein|
          Length = 165

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -3

Query: 343 PTRFNVAVCKFWSCRQA*QPLLLSVLLFGPFSLIVDAGDLACISCVCTIICSYVPIVERC 164
           P  F  ++ +  SC +   P+ +  LL G            C+ C CT+ CS  P++  C
Sbjct: 61  PEEFKASINRVNSCLRKNLPVNVRWLLCG------------CLCCCCTLGCSMWPVI--C 106

Query: 163 VYLVIRRKL 137
           +    RR +
Sbjct: 107 LSKRTRRSI 115

>CHIC2_HUMAN (Q9UKJ5) Cysteine-rich hydrophobic domain 2 protein (BrX-like|
           translocated in leukemia)
          Length = 165

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -3

Query: 343 PTRFNVAVCKFWSCRQA*QPLLLSVLLFGPFSLIVDAGDLACISCVCTIICSYVPIVERC 164
           P  F  ++ +  SC +   P+ +  LL G            C+ C CT+ CS  P++  C
Sbjct: 61  PEEFKASINRVNSCLKKNLPVNVRWLLCG------------CLCCCCTLGCSMWPVI--C 106

Query: 163 VYLVIRRKL 137
           +    RR +
Sbjct: 107 LSKRTRRSI 115

>CRVP2_LAPHA (Q8UW11) Cysteine-rich venom protein 2 precursor (CRVP)|
          Length = 238

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 223 ACISCVCTIICSYVPIVERCVYLVIRRKLSDNSIEDTC 110
           AC++ +CT  C Y      C  LV  RK     I+  C
Sbjct: 190 ACVNGLCTNPCEYEDAYTNCNDLVKERKCQTEWIKSQC 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,025,129
Number of Sequences: 219361
Number of extensions: 924255
Number of successful extensions: 2027
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2027
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)