>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 3e-20
 Identities = 168/202 (83%), Gaps = 8/202 (3%)
 Strand = Plus / Minus

                                                                           
Query: 28      actataacaattttacaatcttacaacagggcgaggtctccaggttcctggt-----ctt 82
               |||||| |||||||||||| |||||| |||| | || |||||||||||||||     |||
Sbjct: 6252261 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtctggtctt 6252202

                                                                           
Query: 83      caccggctgtctttacttgcccaatttgcaggtgtcttctatcgaattgtcagataactt 142
               |||||| ||||||   |  |||||| ||||||| ||||||||| || ||| |||||| ||
Sbjct: 6252201 caccggttgtcttgcttcccccaatgtgcaggtttcttctatccaa-tgttagataattt 6252143

                                                                           
Query: 143     cc-gacggatgactaag-taaacgcagcgctctacaataggtacataactgcaaataatg 200
               || |    |||| || | |||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 6252142 ccagctcaatgattagggtaaacgcagcactctacaataagtacataactgcaaacaatg 6252083

                                     
Query: 201     gtacagacgcatgaaatgcatg 222
               ||||||||||||||||||||||
Sbjct: 6252082 gtacagacgcatgaaatgcatg 6252061

>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0038J17
          Length = 180186

 Score =  107 bits (54), Expect = 3e-20
 Identities = 168/202 (83%), Gaps = 8/202 (3%)
 Strand = Plus / Minus

                                                                          
Query: 28     actataacaattttacaatcttacaacagggcgaggtctccaggttcctg-----gtctt 82
              |||||| |||||||||||| |||||| |||| | || |||||||||||||     |||||
Sbjct: 114459 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtctggtctt 114400

                                                                          
Query: 83     caccggctgtctttacttgcccaatttgcaggtgtcttctatcgaattgtcagataactt 142
              |||||| ||||||   |  |||||| ||||||| ||||||||| || ||| |||||| ||
Sbjct: 114399 caccggttgtcttgcttcccccaatgtgcaggtttcttctatccaa-tgttagataattt 114341

                                                                          
Query: 143    cc-gacggatgactaag-taaacgcagcgctctacaataggtacataactgcaaataatg 200
              || |    |||| || | |||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 114340 ccagctcaatgattagggtaaacgcagcactctacaataagtacataactgcaaacaatg 114281

                                    
Query: 201    gtacagacgcatgaaatgcatg 222
              ||||||||||||||||||||||
Sbjct: 114280 gtacagacgcatgaaatgcatg 114259

>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0515G01
          Length = 175072

 Score =  107 bits (54), Expect = 3e-20
 Identities = 168/202 (83%), Gaps = 8/202 (3%)
 Strand = Plus / Minus

                                                                         
Query: 28    actataacaattttacaatcttacaacagggcgaggtctccaggttcctg-----gtctt 82
             |||||| |||||||||||| |||||| |||| | || |||||||||||||     |||||
Sbjct: 23327 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtctggtctt 23268

                                                                         
Query: 83    caccggctgtctttacttgcccaatttgcaggtgtcttctatcgaattgtcagataactt 142
             |||||| ||||||   |  |||||| ||||||| ||||||||| || ||| |||||| ||
Sbjct: 23267 caccggttgtcttgcttcccccaatgtgcaggtttcttctatccaa-tgttagataattt 23209

                                                                         
Query: 143   cc-gacggatgactaag-taaacgcagcgctctacaataggtacataactgcaaataatg 200
             || |    |||| || | |||||||||| |||||||||| ||||||||||||||| ||||
Sbjct: 23208 ccagctcaatgattagggtaaacgcagcactctacaataagtacataactgcaaacaatg 23149

                                   
Query: 201   gtacagacgcatgaaatgcatg 222
             ||||||||||||||||||||||
Sbjct: 23148 gtacagacgcatgaaatgcatg 23127

>dbj|AK060604.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B01, full
           insert sequence
          Length = 987

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 158 gtaaacgcagcgctctacaataggtacataactgcaaataatggtacagacgcatgaaat 217
           ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 739 gtaaacgcagcactctacaataagtacataactgcaaacaatggtacagacgcatgaaat 680

                
Query: 218 gcatg 222
           |||||
Sbjct: 679 gcatg 675



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 28  actataacaattttacaatcttacaacagggcgaggtctccaggttcctggtct 81
           |||||| |||||||||||| |||||| |||| | || |||||||||||||||||
Sbjct: 875 actatagcaattttacaatattacaatagggtggggcctccaggttcctggtct 822

>gb|AY111267.1| Zea mays CL44621_1 mRNA sequence
          Length = 634

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                    
Query: 29 ctataacaattttacaatcttacaacagggcgaggtctccaggttcctggtcttcacc 86
          ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 29 ctatagcaattgtacaatcttacaacagggcgaggcctccaggttcctggtcttcacc 86

>emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chromosome 13, complete
             sequence
          Length = 191856

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aaaataaacaaaagaaattaa 24
             |||||||||||||||||||||
Sbjct: 46261 aaaataaacaaaagaaattaa 46241

>emb|AL139282.10| Human DNA sequence from clone RP1-144B6 on chromosome 1 Contains part
             of the PLAC3 gene for placenta-specific 3 (PLAC3),
             complete sequence
          Length = 90882

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     aaaataaacaaaagaaattaa 24
             |||||||||||||||||||||
Sbjct: 75773 aaaataaacaaaagaaattaa 75793

>gb|AC149416.1| Phakopsora pachyrhizi clone JGIAFNA-77J12, complete sequence
          Length = 34472

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    aaataaacaaaagaaattaa 24
            ||||||||||||||||||||
Sbjct: 2646 aaataaacaaaagaaattaa 2665

>gb|AC146788.13| Medicago truncatula clone mth2-11a6, complete sequence
          Length = 116349

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      aaaataaacaaaagaaatta 23
              ||||||||||||||||||||
Sbjct: 111673 aaaataaacaaaagaaatta 111654

>gb|AC139525.3| Medicago truncatula clone mth2-26o22, complete sequence
          Length = 103039

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    aaaataaacaaaagaaatta 23
            ||||||||||||||||||||
Sbjct: 8072 aaaataaacaaaagaaatta 8091

>emb|AL356789.16| Human DNA sequence from clone RP5-1076L12 on chromosome 1p32.1-33
             Contains the 3' end of a variant of the gene for a novel
             protein, complete sequence
          Length = 99102

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     ataaacaaaagaaattaaccaact 30
             |||||||||||||||| |||||||
Sbjct: 42400 ataaacaaaagaaatttaccaact 42423

>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ccaaaataaacaaaagaaat 21
              ||||||||||||||||||||
Sbjct: 118150 ccaaaataaacaaaagaaat 118131

>gb|AF283107.1|AF283107 Blumeria graminis protein kinase C-like protein gene, complete cds
          Length = 3898

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    caaaataaacaaaagaaatt 22
            ||||||||||||||||||||
Sbjct: 2959 caaaataaacaaaagaaatt 2940

>gb|AC079273.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-373N04, complete
             sequence
          Length = 175987

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tccaaaataaacaaaagaaa 20
             ||||||||||||||||||||
Sbjct: 66428 tccaaaataaacaaaagaaa 66447

>gb|AF262574.1|AF262574 Stolotermes sp. 'Atherton' 16S ribosomal RNA gene, partial
           sequence; mitochondrial gene for mitochondrial product
          Length = 818

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   aaataaacaaaagaaattaa 24
           ||||||||||||||||||||
Sbjct: 718 aaataaacaaaagaaattaa 699

>gb|AC108066.3| Homo sapiens BAC clone RP11-521H5 from 2, complete sequence
          Length = 158599

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     aaaataaacaaaagaaatta 23
             ||||||||||||||||||||
Sbjct: 97531 aaaataaacaaaagaaatta 97512

>gb|AC073928.5| Homo sapiens BAC clone RP11-745P9 from 2, complete sequence
          Length = 138943

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     aaaagaaattaaccaactataaca 36
              ||||||||||||||||||| ||||
Sbjct: 121386 aaaagaaattaaccaactagaaca 121409

>gb|AC152942.2| Ornithorhynchus anatinus chromosome UNK clone OABb-193A1, complete
              sequence
          Length = 139887

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     caattttacaatcttacaac 54
              ||||||||||||||||||||
Sbjct: 114428 caattttacaatcttacaac 114447

>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      aaaagaaattaaccaactat 32
               ||||||||||||||||||||
Sbjct: 1563976 aaaagaaattaaccaactat 1563957

>gb|AC121513.15| Mus musculus chromosome 18, clone RP24-391B9, complete sequence
          Length = 160247

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     caaaataaacaaaagaaatt 22
             ||||||||||||||||||||
Sbjct: 74151 caaaataaacaaaagaaatt 74132

>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       tccaaaataaacaaaagaaa 20
               ||||||||||||||||||||
Sbjct: 2191392 tccaaaataaacaaaagaaa 2191373

>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      aaaagaaattaaccaactat 32
               ||||||||||||||||||||
Sbjct: 1695419 aaaagaaattaaccaactat 1695400

>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
              variable region, strain 129/Sv
          Length = 1382053

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tccaaaataaacaaaagaaa 20
              ||||||||||||||||||||
Sbjct: 405135 tccaaaataaacaaaagaaa 405116


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,535,795
Number of Sequences: 3902068
Number of extensions: 3535795
Number of successful extensions: 74434
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74302
Number of HSP's gapped (non-prelim): 132
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)