ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3f02 |
|---|---|
| Clone Library Name | barley_pub |
>HMT1_MAIZE (Q9FUN0) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (ZmHMT-1) Length = 323 Score = 166 bits (421), Expect = 3e-41 Identities = 75/89 (84%), Positives = 82/89 (92%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NCTPPQF+EGII +F+KQT+KAIAVYPNSGEVW GRAKRWLPVEC G KSFDA+A+RWQE Sbjct: 234 NCTPPQFIEGIICEFRKQTKKAIAVYPNSGEVWDGRAKRWLPVECLGHKSFDALAKRWQE 293 Query: 350 AGASLVGGCCRTTPSTIRAVSKALKSRNG 264 AGASL+GGCCRTTPSTIRAVSK LK R G Sbjct: 294 AGASLIGGCCRTTPSTIRAVSKILKGRTG 322
>HMT1_ARATH (Q9SDL7) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (AtHMT-1) Length = 326 Score = 130 bits (327), Expect = 2e-30 Identities = 55/87 (63%), Positives = 68/87 (78%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NC PPQF+E +IR F K T+KAI VYPNSGEVW G+AK+WLP +CFG F+ A +W++ Sbjct: 240 NCAPPQFIENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATKWRD 299 Query: 350 AGASLVGGCCRTTPSTIRAVSKALKSR 270 GA L+GGCCRTTPSTI A+S+ LK R Sbjct: 300 LGAKLIGGCCRTTPSTINAISRDLKRR 326
>HMT2_ARATH (Q9M1W4) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (AtHMT-2) Length = 333 Score = 100 bits (250), Expect = 2e-21 Identities = 44/90 (48%), Positives = 60/90 (66%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NCTPP+F+EG++ + +K T K I VYPNSGE + K W+ G + F + +W + Sbjct: 244 NCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDEDFVSYVEKWMD 303 Query: 350 AGASLVGGCCRTTPSTIRAVSKALKSRNGL 261 AG SL+GGCCRTTP+TIRA+ K L +R L Sbjct: 304 AGVSLLGGCCRTTPTTIRAIHKRLVNRRSL 333
>HMT3_ARATH (Q8LAX0) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (AtHMT-3) Length = 347 Score = 96.3 bits (238), Expect = 5e-20 Identities = 41/84 (48%), Positives = 58/84 (69%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NCT P+++ +I ++ T K I VYPNSGEV+ G K+W+ E + F + +W++ Sbjct: 250 NCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSKWRD 309 Query: 350 AGASLVGGCCRTTPSTIRAVSKAL 279 AGASL GGCCRTTP+TIRA++K L Sbjct: 310 AGASLFGGCCRTTPNTIRAIAKVL 333
>HMT3_MAIZE (Q9FUM8) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (ZmHMT-3) Length = 338 Score = 91.7 bits (226), Expect = 1e-18 Identities = 39/84 (46%), Positives = 54/84 (64%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NCTPP+F+ G+I +K T+K I +YPNSGE + G K W+ F + W + Sbjct: 243 NCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCK 302 Query: 350 AGASLVGGCCRTTPSTIRAVSKAL 279 GA+L+GGCCRTTP+TIRA+ + L Sbjct: 303 DGAALIGGCCRTTPNTIRAIHRTL 326
>HMT2_MAIZE (Q9FUM9) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (ZmHMT-2) Length = 339 Score = 90.9 bits (224), Expect = 2e-18 Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NCTPP+F+ G+I +K T+K I +YPNSGE + G K W+ F + W + Sbjct: 243 NCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDGEKKEWVESTGVSDGDFVSYVNEWCK 302 Query: 350 AGASLVGGCCRTTPSTIRAVSKAL-KSRN 267 GA L+GGCCRTTP+TIRA+ + L KS N Sbjct: 303 DGAVLIGGCCRTTPNTIRAIHRTLNKSPN 331
>HMT4_MAIZE (Q9FUM7) Homocysteine S-methyltransferase 4 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S-methyltransferase 4) (ZmHMT-4) Length = 342 Score = 90.1 bits (222), Expect = 3e-18 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVE-CFGRKSFDAMARRWQ 354 NCT P+F+ G+I KK T K I VYPNSGE + W+ + G F + W+ Sbjct: 244 NCTAPRFIHGLILSIKKVTSKPIVVYPNSGETYVAETNEWVDSDGATGTDDFVSRVGEWR 303 Query: 353 EAGASLVGGCCRTTPSTIRAVSKALK 276 AGA+L+GGCCRT+P+T+RA+++A++ Sbjct: 304 RAGAALIGGCCRTSPATVRAIARAVR 329
>SMTA_ASTBI (P56707) Selenocysteine methyltransferase (EC 2.1.1.-)| (SECYS-methyltransferase) (SECYS-MT) Length = 338 Score = 88.2 bits (217), Expect = 1e-17 Identities = 42/86 (48%), Positives = 52/86 (60%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NCTPP+F+ +I KK T K I +YPNSGE + K W + F + +W E Sbjct: 244 NCTPPRFIHDLILLLKKVTAKPIVIYPNSGETYDAIRKEWGQNSGVTDEDFVSYVDKWCE 303 Query: 350 AGASLVGGCCRTTPSTIRAVSKALKS 273 +GASLVGGCCRTTP TIR + K L S Sbjct: 304 SGASLVGGCCRTTPDTIRGIYKILSS 329
>SAM4_YEAST (Q08985) Homocysteine S-methyltransferase 2 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S-methyltransferase 2) (S-adenosylmethionine metabolism protein 4) Length = 325 Score = 59.3 bits (142), Expect = 6e-09 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = -3 Query: 467 AIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQEAGASLVGGCCRTTPSTIRAVS 288 A+ YPNSGEV+ K WLP S+D + +++ +GA ++GGCCRT+P I+ +S Sbjct: 260 ALLAYPNSGEVYDTEKKIWLP-NSDKLNSWDTVVKQYISSGARIIGGCCRTSPKDIQEIS 318 Query: 287 KALK 276 A+K Sbjct: 319 AAVK 322
>YM99_YEAST (Q04898) Hypothetical protein YMR321c| Length = 105 Score = 59.3 bits (142), Expect = 6e-09 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = -3 Query: 467 AIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQEAGASLVGGCCRTTPSTIRAVS 288 A+ YPNSGEV+ K WLP S+D + +++ +GA ++GGCCRT+P I+ +S Sbjct: 40 ALLAYPNSGEVYDTEKKIWLP-NSDKLNSWDTVVKQYISSGARIIGGCCRTSPKDIQEIS 98 Query: 287 KALK 276 A+K Sbjct: 99 AAVK 102
>MMUM_ECOLI (Q47690) Homocysteine S-methyltransferase (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase) Length = 310 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/80 (36%), Positives = 41/80 (51%) Frame = -3 Query: 530 NCTPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQE 351 NC + ++ T + VYPNSGE + +K W + D + + WQ Sbjct: 228 NCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCAQLADYLPQ-WQA 286 Query: 350 AGASLVGGCCRTTPSTIRAV 291 AGA L+GGCCRTTP+ I A+ Sbjct: 287 AGARLIGGCCRTTPADIAAL 306
>MHT1_YEAST (Q12525) Homocysteine S-methyltransferase 1 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) Length = 324 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = -3 Query: 464 IAVYPNSGEVWXGRAKRW-LPVECFGRKSFDAMARRWQEAGASLVGGCCRTTPSTIRAVS 288 + VYPNSGE++ + K W P ++ +++ + GA ++GGCCRT+P I ++ Sbjct: 260 LLVYPNSGEIYNPKEKTWHRPTNKLD--DWETTVKKFVDNGARIIGGCCRTSPKDIAEIA 317 Query: 287 KAL 279 A+ Sbjct: 318 SAV 320
>METH_MYCLE (Q49775) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1206 Score = 43.5 bits (101), Expect = 4e-04 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 1/89 (1%) Frame = -3 Query: 530 NC-TPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQ 354 NC T P + +R K ++V PN+G G P++ + +A+A Sbjct: 232 NCATGPAEMSEHLRHLSKHARIPVSVMPNAGLPVLGAKGAEYPLQ--PDELAEALAGFIA 289 Query: 353 EAGASLVGGCCRTTPSTIRAVSKALKSRN 267 E G SLVGGCC TTP IR V+ A+ N Sbjct: 290 EFGLSLVGGCCGTTPDHIREVAAAVARCN 318
>METH_SALTY (P37586) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 43.1 bits (100), Expect = 5e-04 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 7/91 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDA-----M 369 NC P + +++ + E + +PN+G LP FG DA Sbjct: 245 NCALGPDELRQYVQELSRIAECYVTAHPNAG----------LP-NAFGEYDLDADTMAKQ 293 Query: 368 ARRWQEAG-ASLVGGCCRTTPSTIRAVSKAL 279 R W EAG ++VGGCC TTP I A+S+A+ Sbjct: 294 IREWAEAGFLNIVGGCCGTTPEHIAAMSRAV 324
>METH_ECOLI (P13009) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12-dependent isozyme) (MS) Length = 1226 Score = 42.4 bits (98), Expect = 8e-04 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDA-----M 369 NC P + +++ + E + +PN+G LP FG DA Sbjct: 245 NCALGPDELRQYVQELSRIAECYVTAHPNAG----------LP-NAFGEYDLDADTMAKQ 293 Query: 368 ARRWQEAG-ASLVGGCCRTTPSTIRAVSKALK 276 R W +AG ++VGGCC TTP I A+S+A++ Sbjct: 294 IREWAQAGFLNIVGGCCGTTPQHIAAMSRAVE 325
>METH_MYCTU (O33259) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1192 Score = 41.6 bits (96), Expect = 0.001 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = -3 Query: 530 NC-TPPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQ 354 NC T P + +R + ++V PN+G G P+ + +A+A Sbjct: 230 NCATGPAEMSEHLRHLSRHARIPVSVMPNAGLPVLGAKGAEYPL--LPDELAEALAGFIA 287 Query: 353 EAGASLVGGCCRTTPSTIRAVSKAL 279 E G SLVGGCC TTP+ IR V+ A+ Sbjct: 288 EFGLSLVGGCCGTTPAHIREVAAAV 312
>METH_VIBCH (Q9KUW9) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 39.7 bits (91), Expect = 0.005 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 7/92 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDA--MARR 360 NC P + + + + +E ++ +PN+G LP FG A MA Sbjct: 247 NCALGPDELRQYVEELSRISECYVSAHPNAG----------LP-NAFGEYDLSAEEMAEH 295 Query: 359 ---WQEAG-ASLVGGCCRTTPSTIRAVSKALK 276 W +AG +LVGGCC TTP I A++KA++ Sbjct: 296 IAEWAQAGFLNLVGGCCGTTPEHIAAIAKAVE 327
>METH_VIBVY (Q7MHB1) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 35.8 bits (81), Expect = 0.075 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSF--DAMA-- 366 NC P + + + + +E ++ +PN+G LP FG + MA Sbjct: 247 NCALGPDELRPYVEELSRISETFVSTHPNAG----------LP-NAFGEYDLSPEEMAEH 295 Query: 365 -RRWQEAG-ASLVGGCCRTTPSTIRAVSKALKSRN 267 + W ++G +L+GGCC TTP IR ++ A++ + Sbjct: 296 VKEWAQSGFLNLIGGCCGTTPEHIRHMAMAVEGES 330
>METH_VIBPA (Q87L95) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 35.8 bits (81), Expect = 0.075 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSF--DAMA-- 366 NC P + + + + +E ++ +PN+G LP FG + MA Sbjct: 247 NCALGPDELRPYVEELSRISESFVSAHPNAG----------LP-NAFGEYDLSPEDMAEH 295 Query: 365 -RRWQEAG-ASLVGGCCRTTPSTIRAVSKALK 276 + W +G +L+GGCC TTP IR +++A++ Sbjct: 296 VKEWASSGFLNLIGGCCGTTPEHIRQMAQAVE 327
>METH_VIBVU (Q8DCJ7) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 35.4 bits (80), Expect = 0.098 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSF--DAMA-- 366 NC P + + + + +E ++ +PN+G LP FG + MA Sbjct: 247 NCALGPDELRPYVEELSRISETFVSTHPNAG----------LP-NAFGEYDLSPEEMAEH 295 Query: 365 -RRWQEAG-ASLVGGCCRTTPSTIRAVSKALK 276 + W ++G +L+GGCC TTP IR ++ A++ Sbjct: 296 VKEWAQSGFLNLIGGCCGTTPEHIRHMAMAVE 327
>EXO84_KLULA (Q6CNM8) Exocyst complex component EXO84| Length = 720 Score = 33.9 bits (76), Expect = 0.29 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = +3 Query: 78 NDIVIFLST--STYTRIHDDWITSAQFLSVHVSSTHHQTFYXSSGQHTLIRNRDSELLKK 251 ND+V+ + S T + + + ++V V S H +F S+ QHTL R+RD ++ K Sbjct: 341 NDVVLIAAPKPSKQTELTVSRFSPLRDVTVEVQSEHELSFNFSNKQHTLYRHRDPQVFSK 400
>METH_CAEEL (Q09582) Probable methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1249 Score = 32.7 bits (73), Expect = 0.64 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Frame = -3 Query: 515 QFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFG-----RKSFDAMARRWQE 351 QFV+ + K ++ I YPN+G LP G + D + ++ Sbjct: 258 QFVDNM----SKWSDSFIICYPNAG----------LPNALGGYDETPEEMADVLREFARD 303 Query: 350 AGASLVGGCCRTTPSTIRAVSKALK 276 +++GGCC TTP I A+ KA++ Sbjct: 304 GLVNIIGGCCGTTPDHINAMYKAVQ 328
>METH_VIBF1 (Q5E814) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 32.3 bits (72), Expect = 0.83 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSF--DAMARR 360 NC P + + D + +E ++ +PN+G LP FG + MA Sbjct: 248 NCALGPDELREYVSDLSRISECYVSAHPNAG----------LP-NAFGEYDLSPEDMAEH 296 Query: 359 ---WQEAG-ASLVGGCCRTTPSTIRAVS 288 W +G +L+GGCC TTP IR ++ Sbjct: 297 VAEWASSGFLNLIGGCCGTTPEHIRQMA 324
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 32.3 bits (72), Expect = 0.83 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = -2 Query: 408 AGGVLRPQELRRDGEEVAGGRRQPGGRMLPHDAVDHPGGV 289 AGG RP+ R G AGG +PGG P PGG+ Sbjct: 392 AGGAPRPEGQREGGYRPAGGPPRPGGAPRPGGFGGAPGGM 431
>METH_HUMAN (Q99707) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent) (MS) Length = 1265 Score = 31.6 bits (70), Expect = 1.4 Identities = 11/23 (47%), Positives = 19/23 (82%) Frame = -3 Query: 341 SLVGGCCRTTPSTIRAVSKALKS 273 ++VGGCC +TP IR +++A+K+ Sbjct: 318 NIVGGCCGSTPDHIREIAEAVKN 340
>NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS)| Length = 1349 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -2 Query: 360 VAGGRRQPGGRMLPHDAVDHPGGVQGAQ 277 ++G GG P VDHPGG QGAQ Sbjct: 70 LSGNPNGGGGDSSPSHEVDHPGGAQGAQ 97
>METH_VIBFI (Q9AJQ8) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1226 Score = 30.8 bits (68), Expect = 2.4 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%) Frame = -3 Query: 530 NCT-PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSF--DAMARR 360 NC P + + + + +E ++ +PN+G LP FG + MA Sbjct: 248 NCALGPDELREYVSELSRISECYVSAHPNAG----------LP-NAFGEYDLSPEDMAEH 296 Query: 359 ---WQEAG-ASLVGGCCRTTPSTIRAVS 288 W +G +L+GGCC TTP IR ++ Sbjct: 297 VAEWASSGFLNLIGGCCGTTPEHIRQMA 324
>SCPA1_STRPY (P15926) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1167 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 146 PISIGARQQHTSSDVLQXLRTTHAHTKPRL*TSEEEITTA 265 PIS GA++QHT DV+ T T T + +T A Sbjct: 911 PISSGAKEQHTDFDVIVDNTTPEVATSATFSTEDRRLTLA 950
>ZO3_HUMAN (O95049) Tight junction protein ZO-3 (Zonula occludens 3 protein)| (Zona occludens 3 protein) (Tight junction protein 3) Length = 933 Score = 30.0 bits (66), Expect = 4.1 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = -2 Query: 369 GEEVAGGRRQPGGRMLPHDAVDHPGG-VQG-AQEQERAVVISSSEVQSRGFV*ACVVLRX 196 G ++GGR +PGG M+ D V PGG +G Q + V+++ +++ A +L+ Sbjct: 23 GIAISGGRDRPGGSMVVSDVV--PGGPAEGRLQTGDHIVMVNGVSMENATSAFAIQILKT 80 Query: 195 C 193 C Sbjct: 81 C 81
>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1195 Score = 30.0 bits (66), Expect = 4.1 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Frame = -3 Query: 530 NC-TPPQFVEGIIRDFKKQTEKAIAVYPNSG--EVWXGRA-KRWLPVECFGRKSFDAMAR 363 NC T P ++ ++ + + ++ PN+G E G+A R P+E ++ Sbjct: 227 NCATGPDLMKEHVKYLSEHSPFVVSCIPNAGLPENVGGQAFYRLTPMELQM-----SLMH 281 Query: 362 RWQEAGASLVGGCCRTTPSTIRAVSKALK 276 ++ G ++GGCC T P I+A++ K Sbjct: 282 FIEDLGVQVIGGCCGTRPDHIKALADIAK 310
>C5AP_STRP8 (Q8NZ80) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1150 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 146 PISIGARQQHTSSDVLQXLRTTHAHTKPRL*TSEEEITTA 265 PIS GA++QHT DV+ T T T + +T A Sbjct: 911 PISSGAKEQHTDFDVIVDNTTLEVATSATFSTEDRRLTLA 950
>C5AP_STRP1 (P58099) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1181 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 146 PISIGARQQHTSSDVLQXLRTTHAHTKPRL*TSEEEITTA 265 PIS GA++QHT DV+ T T T + +T A Sbjct: 911 PISSGAKEQHTDFDVIVDNTTPEVATSATFSTEDRRLTLA 950
>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1184 Score = 30.0 bits (66), Expect = 4.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 146 PISIGARQQHTSSDVLQXLRTTHAHTKPRL*TSEEEITTA 265 PIS GA++QHT DV+ T T T + +T A Sbjct: 911 PISSGAKEQHTDFDVIVDNTTPEVATSATFSTEDRRLTLA 950
>C5AP_STRP3 (Q8K5Q0) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1169 Score = 29.6 bits (65), Expect = 5.4 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 146 PISIGARQQHTSSDVLQXLRTTHAHTKPRL*TSEEEITTA 265 PIS GA++QHT DV+ T A T + +T A Sbjct: 913 PISSGAKEQHTDFDVIVDNTTPEAATSATFSAEDRRLTLA 952
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 29.6 bits (65), Expect = 5.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 357 PPPRHRVEALAAEALHRQPPLGSPVPD 437 PPP HR +AE+L R+P PVP+ Sbjct: 288 PPPPHRPRLPSAESLSRRPLPALPVPE 314
>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 550 Score = 29.3 bits (64), Expect = 7.1 Identities = 20/67 (29%), Positives = 25/67 (37%) Frame = -2 Query: 483 EANGEGDRGVPEQRRGLXRESQAVAAGGVLRPQELRRDGEEVAGGRRQPGGRMLPHDAVD 304 ++ G+G R P G + A P R +GGR PGG P A Sbjct: 449 QSQGQGQRKHPYGHPGNAPSFPSDHANPGFNPYGAARPAGRPSGGRPGPGGNRGPASANR 508 Query: 303 HPGGVQG 283 PGG G Sbjct: 509 GPGGPGG 515
>BHMT_RAT (O09171) Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)| Length = 407 Score = 29.3 bits (64), Expect = 7.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 368 ARRWQEAGASLVGGCCRTTPSTIRAVSKALKSRNG 264 AR G +GGCC P IRA+++ L G Sbjct: 285 AREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERG 319
>BHMT_MOUSE (O35490) Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)| Length = 407 Score = 29.3 bits (64), Expect = 7.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 368 ARRWQEAGASLVGGCCRTTPSTIRAVSKALKSRNG 264 AR G +GGCC P IRA+++ L G Sbjct: 285 AREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERG 319
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -2 Query: 363 EVAGGRRQPGGRMLPHDAVDHPGGVQGAQEQERAVVISSSEVQSRG 226 + A GRR G LP P G +G ER VV+ + + +RG Sbjct: 1340 DAAVGRRVGAGPGLPERGEQRPVGRRGPVGHEREVVVGGAALPARG 1385
>BHMT_HUMAN (Q93088) Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)| Length = 406 Score = 29.3 bits (64), Expect = 7.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 368 ARRWQEAGASLVGGCCRTTPSTIRAVSKALKSRNG 264 AR G +GGCC P IRA+++ L G Sbjct: 285 AREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERG 319
>HIS4_NEUCR (Q7RXQ8) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (5-proFAR isomerase) Length = 257 Score = 28.9 bits (63), Expect = 9.2 Identities = 20/63 (31%), Positives = 24/63 (38%) Frame = -3 Query: 521 PPQFVEGIIRDFKKQTEKAIAVYPNSGEVWXGRAKRWLPVECFGRKSFDAMARRWQEAGA 342 PP + + RD I + P + E K W G DA AR W EAGA Sbjct: 39 PPAYFAKLYRDNDLSGAHVIMLGPGNKEAALESLKAWPGGLQVGGGITDANAREWVEAGA 98 Query: 341 SLV 333 V Sbjct: 99 EKV 101
>BHMT_PONPY (Q5RFG2) Betaine--homocysteine S-methyltransferase (EC 2.1.1.5)| Length = 406 Score = 28.9 bits (63), Expect = 9.2 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 368 ARRWQEAGASLVGGCCRTTPSTIRAVSKALKSRNG 264 AR G +GGCC P IRA+++ L G Sbjct: 285 AREAYNMGIRYIGGCCGFEPYHIRAIAEELAPERG 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,061,762 Number of Sequences: 219361 Number of extensions: 1317734 Number of successful extensions: 3725 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 3612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3716 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
