ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF297044.1| Zea mays homocysteine S-methyltransferase-1 mRNA,... 159 1e-35
2dbj|AK068002.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 3e-33
3gb|AY111638.1| Zea mays CL1145_1 mRNA sequence 137 4e-29
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 113 6e-22
5gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
7gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
8gb|AC122342.4| Mus musculus BAC clone RP23-357O17 from chromosom... 44 0.46
9emb|BX323079.7| Zebrafish DNA sequence from clone DKEYP-113D7 in... 44 0.46
10ref|NM_190769.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
11gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
12gb|AC135121.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
13gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
14gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.8
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
20dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
22dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
23dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
24dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
25gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.8
26gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
27gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
28emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.8
29emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4,... 42 1.8
30ref|NM_113929.2| Arabidopsis thaliana unknown protein AT3G30300 ... 40 7.2
31gb|AY676165.1| Haloferax volcanii FolC-P protein gene, complete cds 40 7.2
32ref|NM_191963.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
33ref|XM_477971.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.2
34ref|XM_476868.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.2
35gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 7.2
36gb|BT008297.1| Arabidopsis thaliana At3g30300 gene, complete cds 40 7.2
37emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 40 7.2
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
39emb|BX824393.1|CNS0A7EG Arabidopsis thaliana Full-length cDNA Co... 40 7.2
40dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
41dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
42dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
43dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.2
44dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
45dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
46dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
47dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
48dbj|AP001314.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.2
49dbj|AK117160.1| Arabidopsis thaliana At3g30300 mRNA for putative... 40 7.2 
>gb|AF297044.1| Zea mays homocysteine S-methyltransferase-1 mRNA, complete cds
          Length = 1275

 Score =  159 bits (80), Expect = 1e-35
 Identities = 187/223 (83%)
 Strand = Plus / Minus

                                                                        
Query: 310  ggcgtcgtgcggcagcatcctcccaccaggctggcgccggcctcctgccacctcctcgcc 369
            ||||| || |||||||| ||||| |  |||||||| || ||||||||||| ||| |||| 
Sbjct: 1025 ggcgttgtccggcagcaccctccgatgaggctggcccccgcctcctgccatctcttcgcg 966

                                                                        
Query: 370  atcgcgtcgaagctcttgcggccgaagcactccaccggcagccaccgcttggctctcccg 429
            |  ||||||||||| ||| | || |||||||| ||||||||||||| ||| |||||||||
Sbjct: 965  agagcgtcgaagcttttgtgacccaagcactcaaccggcagccacctcttcgctctcccg 906

                                                                        
Query: 430  tnccagacctcgccgctgttcgggtacaccgcgatcgccttctccgtttgcttcttgaag 489
            | ||| || ||||||||||||||||| || || ||||||||||  ||||||||| | || 
Sbjct: 905  tcccaaacttcgccgctgttcgggtaaactgcaatcgccttcttggtttgcttcctaaat 846

                                                       
Query: 490  tcgcgtatgatgccctcgacgaactgaggcggcgtgcagttca 532
            || | |||||||||||||| ||||||||| || ||||||||||
Sbjct: 845  tcacatatgatgccctcgatgaactgaggaggtgtgcagttca 803
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>dbj|AK068002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128N24, full
           insert sequence
          Length = 1589

 Score =  151 bits (76), Expect = 3e-33
 Identities = 111/123 (90%)
 Strand = Plus / Minus

                                                                       
Query: 408 cagccaccgcttggctctcccgtnccagacctcgccgctgttcgggtacaccgcgatcgc 467
           |||||| | ||| ||||| |||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 972 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 913

                                                                       
Query: 468 cttctccgtttgcttcttgaagtcgcgtatgatgccctcgacgaactgaggcggcgtgca 527
           |||||  |||||||||||||  ||||||||||||||||||| ||||||||||||||||||
Sbjct: 912 cttcttggtttgcttcttgagctcgcgtatgatgccctcgatgaactgaggcggcgtgca 853

              
Query: 528 gtt 530
           |||
Sbjct: 852 gtt 850



 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 343
            ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| |
Sbjct: 1269 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 1210

                                                                     
Query: 344  cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 400
            |||||||||||||||||||| |||| | |||||||||||||||| | || |||||||
Sbjct: 1209 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 1153
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>gb|AY111638.1| Zea mays CL1145_1 mRNA sequence
          Length = 1228

 Score =  137 bits (69), Expect = 4e-29
 Identities = 137/160 (85%)
 Strand = Plus / Minus

                                                                       
Query: 373 gcgtcgaagctcttgcggccgaagcactccaccggcagccaccgcttggctctcccgtnc 432
           ||||||||||| ||| | || |||||||| ||||||||||||| ||| |||||||||| |
Sbjct: 962 gcgtcgaagcttttgtgacccaagcactcaaccggcagccacctcttcgctctcccgtcc 903

                                                                       
Query: 433 cagacctcgccgctgttcgggtacaccgcgatcgccttctccgtttgcttcttgaagtcg 492
           || || ||||||||||||||||| || || ||||||||||  ||||||||| | || || 
Sbjct: 902 caaacttcgccgctgttcgggtaaactgcaatcgccttcttggtttgcttcctaaattca 843

                                                   
Query: 493 cgtatgatgccctcgacgaactgaggcggcgtgcagttca 532
           | |||||||||||||| ||||||||| || ||||||||||
Sbjct: 842 catatgatgccctcgatgaactgaggaggtgtgcagttca 803
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                           
Query: 284     ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 343
               ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| |
Sbjct: 6325754 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 6325695

                                                                        
Query: 344     cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 400
               |||||||||||||||||||| |||| | |||||||||||||||| | || |||||||
Sbjct: 6325694 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 6325638



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                           
Query: 408     cagccaccgcttggctctcccgtnccagacctcgccgctgttcgggtacaccgcgatcgc 467
               |||||| | ||| ||||| |||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 6325457 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 6325398

                             
Query: 468     cttctccgtttgct 481
               |||||  |||||||
Sbjct: 6325397 cttcttggtttgct 6325384



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                  
Query: 480     cttcttgaagtcgcgtatgatgccctcgacgaactgaggcggcgtgcagtt 530
               ||||||||  ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 6325275 cttcttgagctcgcgtatgatgccctcgatgaactgaggcggcgtgcagtt 6325225
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>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
            complete sequence
          Length = 146568

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 343
            ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| |
Sbjct: 5880 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 5821

                                                                     
Query: 344  cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 400
            |||||||||||||||||||| |||| | |||||||||||||||| | || |||||||
Sbjct: 5820 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 5764



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                        
Query: 408  cagccaccgcttggctctcccgtnccagacctcgccgctgttcgggtacaccgcgatcgc 467
            |||||| | ||| ||||| |||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 5583 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 5524

                          
Query: 468  cttctccgtttgct 481
            |||||  |||||||
Sbjct: 5523 cttcttggtttgct 5510



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                               
Query: 480  cttcttgaagtcgcgtatgatgccctcgacgaactgaggcggcgtgcagtt 530
            ||||||||  ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5401 cttcttgagctcgcgtatgatgccctcgatgaactgaggcggcgtgcagtt 5351
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                           
Query: 284     ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 343
               ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| |
Sbjct: 6324967 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 6324908

                                                                        
Query: 344     cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 400
               |||||||||||||||||||| |||| | |||||||||||||||| | || |||||||
Sbjct: 6324907 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 6324851



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                           
Query: 408     cagccaccgcttggctctcccgtnccagacctcgccgctgttcgggtacaccgcgatcgc 467
               |||||| | ||| ||||| |||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 6324670 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 6324611

                             
Query: 468     cttctccgtttgct 481
               |||||  |||||||
Sbjct: 6324610 cttcttggtttgct 6324597



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                  
Query: 480     cttcttgaagtcgcgtatgatgccctcgacgaactgaggcggcgtgcagtt 530
               ||||||||  ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 6324488 cttcttgagctcgcgtatgatgccctcgatgaactgaggcggcgtgcagtt 6324438



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 338      ggctggcgccggcctcctgccacc 361
                ||||||||||| ||||||||||||
Sbjct: 24761764 ggctggcgccgtcctcctgccacc 24761787
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>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21,
              complete sequence
          Length = 155651

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                          
Query: 284    ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 343
              ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| |
Sbjct: 138962 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 138903

                                                                       
Query: 344    cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 400
              |||||||||||||||||||| |||| | |||||||||||||||| | || |||||||
Sbjct: 138902 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 138846



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 408    cagccaccgcttggctctcccgtnccagacctcgccgctgttcgggtacaccgcgatcgc 467
              |||||| | ||| ||||| |||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 138665 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 138606

                            
Query: 468    cttctccgtttgct 481
              |||||  |||||||
Sbjct: 138605 cttcttggtttgct 138592



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                 
Query: 480    cttcttgaagtcgcgtatgatgccctcgacgaactgaggcggcgtgcagtt 530
              ||||||||  ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 138483 cttcttgagctcgcgtatgatgccctcgatgaactgaggcggcgtgcagtt 138433
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>gb|AC122342.4| Mus musculus BAC clone RP23-357O17 from chromosome 8, complete sequence
          Length = 199412

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 231    gactctgaacttctgaagaaga 252
              ||||||||||||||||||||||
Sbjct: 110854 gactctgaacttctgaagaaga 110833
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>emb|BX323079.7| Zebrafish DNA sequence from clone DKEYP-113D7 in linkage group 19,
              complete sequence
          Length = 165200

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 7      agacagtctatcttagaaacat 28
              ||||||||||||||||||||||
Sbjct: 101835 agacagtctatcttagaaacat 101856
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>ref|NM_190769.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 630

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 337 aggctggcgccggcctcctgccacc 361
           |||||||||||| ||||||||||||
Sbjct: 606 aggctggcgccgtcctcctgccacc 582
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>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02,
             complete sequence
          Length = 99795

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 75979 aggctggcgccgtcctcctgccacc 75955
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>gb|AC135121.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0089M05, complete sequence
          Length = 131308

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 46681 aggctggcgccgtcctcctgccacc 46657
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>gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0099J16, complete sequence
          Length = 133198

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 56483 aggctggcgccgtcctcctgccacc 56459
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 300     gatggtcgacggcgtcgtgcggcag 324
               |||||||||||||||||||| ||||
Sbjct: 1718378 gatggtcgacggcgtcgtgccgcag 1718402
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 23455165 aggctggcgccgtcctcctgccacc 23455189
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 337     aggctggcgccggcctcctgccacc 361
               |||||||||||| ||||||||||||
Sbjct: 5794756 aggctggcgccgtcctcctgccacc 5794780
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 25948483 aggctggcgccgtcctcctgccacc 25948507



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 16878935 aggctggcgccgtcctcctgccacc 16878911
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 20310865 aggctggcgccgtcctcctgccacc 20310889



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 338      ggctggcgccggcctcctgccacc 361
                ||||||||||| ||||||||||||
Sbjct: 16077506 ggctggcgccgtcctcctgccacc 16077529



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 338      ggctggcgccggcctcctgccacc 361
                ||||||||||| ||||||||||||
Sbjct: 10795907 ggctggcgccgtcctcctgccacc 10795930



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 342     ggcgccggcctcctgccacctcctcgcc 369
               ||||||||||||| ||||||||| ||||
Sbjct: 4321169 ggcgccggcctcccgccacctccgcgcc 4321196
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 24473306 aggctggcgccgtcctcctgccacc 24473282
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 37604106 aggctggcgccgtcctcctgccacc 37604130



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 337     aggctggcgccggcctcctgccacc 361
               |||||||||||| ||||||||||||
Sbjct: 2773777 aggctggcgccgtcctcctgccacc 2773801



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 337      aggctggcgccggcctcctgccac 360
                |||||||||||| |||||||||||
Sbjct: 27532542 aggctggcgccgtcctcctgccac 27532565



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 338      ggctggcgccggcctcctgccacc 361
                ||||||||||| ||||||||||||
Sbjct: 22069955 ggctggcgccgtcctcctgccacc 22069932
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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0677H08
          Length = 178830

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 64580 aggctggcgccgtcctcctgccacc 64604
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>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0009G03
          Length = 163526

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 79454 aggctggcgccgtcctcctgccacc 79478
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>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0052O11
          Length = 106467

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 53476 aggctggcgccgtcctcctgccacc 53500
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>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0678G09
          Length = 139220

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 19765 aggctggcgccgtcctcctgccacc 19789
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     caccaggctggcgccggcctc 353
               |||||||||||||||||||||
Sbjct: 1773325 caccaggctggcgccggcctc 1773305
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 26267181 aggctggcgccgtcctcctgccacc 26267205



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 337      aggctggcgccggcctcctgccacc 361
                |||||||||||| ||||||||||||
Sbjct: 16972706 aggctggcgccgtcctcctgccacc 16972682
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 337     aggctggcgccggcctcctgccacc 361
               |||||||||||| ||||||||||||
Sbjct: 5794749 aggctggcgccgtcctcctgccacc 5794773
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>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159056

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 337    aggctggcgccggcctcctgccacc 361
              |||||||||||| ||||||||||||
Sbjct: 149279 aggctggcgccgtcctcctgccacc 149303
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>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
             complete sequence
          Length = 139298

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 337   aggctggcgccggcctcctgccacc 361
             |||||||||||| ||||||||||||
Sbjct: 11068 aggctggcgccgtcctcctgccacc 11092
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>ref|NM_113929.2| Arabidopsis thaliana unknown protein AT3G30300 mRNA, complete cds
          Length = 2377

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 480 cttcttgaagtcgcgtatga 499
           ||||||||||||||||||||
Sbjct: 172 cttcttgaagtcgcgtatga 191
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>gb|AY676165.1| Haloferax volcanii FolC-P protein gene, complete cds
          Length = 2517

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 caccgcccggatggtcgacg 310
           ||||||||||||||||||||
Sbjct: 156 caccgcccggatggtcgacg 175
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>ref|NM_191963.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 171

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 337 aggctggcgccggcctcctgccac 360
           |||||||||||| |||||||||||
Sbjct: 61  aggctggcgccgtcctcctgccac 84
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>ref|XM_477971.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 168

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 338 ggctggcgccggcctcctgccacc 361
           ||||||||||| ||||||||||||
Sbjct: 68  ggctggcgccgtcctcctgccacc 45
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>ref|XM_476868.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 585

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 342 ggcgccggcctcctgccacctcctcgcc 369
           ||||||||||||| ||||||||| ||||
Sbjct: 484 ggcgccggcctcccgccacctccgcgcc 511
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     gatggtcgacggcgtcgtgc 319
               ||||||||||||||||||||
Sbjct: 1695637 gatggtcgacggcgtcgtgc 1695618
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>gb|BT008297.1| Arabidopsis thaliana At3g30300 gene, complete cds
          Length = 2034

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 480 cttcttgaagtcgcgtatga 499
           ||||||||||||||||||||
Sbjct: 21  cttcttgaagtcgcgtatga 40
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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    ggctggcgccggcctcctgccacc 361
              ||||||||||| ||||||||||||
Sbjct: 140453 ggctggcgccgtcctcctgccacc 140476
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 338      ggctggcgccggcctcctgccacc 361
                ||||||||||| ||||||||||||
Sbjct: 15868525 ggctggcgccgtcctcctgccacc 15868548
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>emb|BX824393.1|CNS0A7EG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH45ZH08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2184

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 480 cttcttgaagtcgcgtatga 499
           ||||||||||||||||||||
Sbjct: 65  cttcttgaagtcgcgtatga 84
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>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0038F09
          Length = 166568

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 338   ggctggcgccggcctcctgccacc 361
             ||||||||||| ||||||||||||
Sbjct: 47839 ggctggcgccgtcctcctgccacc 47862
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>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1057_F01
          Length = 120026

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 338   ggctggcgccggcctcctgccacc 361
             ||||||||||| ||||||||||||
Sbjct: 12200 ggctggcgccgtcctcctgccacc 12223
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>dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1125_C04
          Length = 98476

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   aggctggcgccggcctcctgccac 360
             |||||||||||| |||||||||||
Sbjct: 53245 aggctggcgccgtcctcctgccac 53268
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     cccaccaggctggcgccggc 350
               ||||||||||||||||||||
Sbjct: 3895234 cccaccaggctggcgccggc 3895215



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 329     ctcccaccaggctggcgccg 348
               ||||||||||||||||||||
Sbjct: 3709448 ctcccaccaggctggcgccg 3709429
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>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1151A10
          Length = 124344

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 338   ggctggcgccggcctcctgccacc 361
             ||||||||||| ||||||||||||
Sbjct: 81468 ggctggcgccgtcctcctgccacc 81445
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>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0557D09
          Length = 135315

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    ggctggcgccggcctcctgccacc 361
              ||||||||||| ||||||||||||
Sbjct: 125353 ggctggcgccgtcctcctgccacc 125376
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>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0018O23
          Length = 142143

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 338  ggctggcgccggcctcctgccacc 361
            ||||||||||| ||||||||||||
Sbjct: 6666 ggctggcgccgtcctcctgccacc 6689
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>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1014_E09
          Length = 184624

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 342    ggcgccggcctcctgccacctcctcgcc 369
              ||||||||||||| ||||||||| ||||
Sbjct: 142223 ggcgccggcctcccgccacctccgcgcc 142250
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>dbj|AP001314.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T6J22
          Length = 75842

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   cttcttgaagtcgcgtatga 499
             ||||||||||||||||||||
Sbjct: 18925 cttcttgaagtcgcgtatga 18906
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>dbj|AK117160.1| Arabidopsis thaliana At3g30300 mRNA for putative auxin-independent
           growth promoter protein, complete cds, clone:
           RAFL16-70-B12
          Length = 2378

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 480 cttcttgaagtcgcgtatga 499
           ||||||||||||||||||||
Sbjct: 172 cttcttgaagtcgcgtatga 191


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,029,366
Number of Sequences: 3902068
Number of extensions: 4029366
Number of successful extensions: 68431
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67537
Number of HSP's gapped (non-prelim): 894
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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