ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3f01 |
|---|---|
| Clone Library Name | barley_pub |
>SYC_BORBU (O51545) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 480 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 193 YIPLDFSFLCLHSSNKNWMDFVLTNL 116 + PLDF +LCL S +N + F L NL Sbjct: 297 FSPLDFRYLCLTSHYRNQLKFSLDNL 322
>VPH2_YEAST (P32341) Vacuolar ATPase assembly integral membrane protein VPH2| (Protein VMA12) Length = 215 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 253 IFFVXKYMLSSDLICCHKKLYIPLDFSF 170 +F+V +Y SDL C K+L PL+F F Sbjct: 46 LFYVKEYRKDSDLQCSIKELLKPLEFEF 73
>NTP1_FOWPV (O72907) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside| triphosphate phosphohydrolase I) (NPH I) Length = 637 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +3 Query: 108 TKIKFVRTKS-IQFLLEECKHKNEKSKGMYNFL*QQIKSEDSIYFXTKNIYDNESSNLTK 284 T IK + KS I +++EC +NF+ + + ED+ TK +Y+ + NL + Sbjct: 126 TNIKSINVKSRIFIIIDEC----------HNFISKSLTKEDNKKRNTKLVYNYIAKNLMQ 175 Query: 285 KN 290 KN Sbjct: 176 KN 177
>NU5M_TRYBB (P04540) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 590 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/57 (24%), Positives = 28/57 (49%) Frame = -2 Query: 300 LHFHFSL*D*RIHYHKYFSXQNICCLQI*FVVIKNCTFLWISHFYAYILLTRIGWIL 130 +H F L D R ++ YF + L + F ++ +C+ ++ FY +L + +L Sbjct: 347 IHIFFGLQDLRCYFFMYFCGCVLARLLLIFAILNSCSIWFLCGFYCKDMLLALLMLL 403
>LYS14_YEAST (P40971) Lysine biosynthesis regulatory protein LYS14| Length = 790 Score = 28.9 bits (63), Expect = 3.3 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 20/93 (21%) Frame = +3 Query: 81 IHPIQINLLTKIKFVRTKSIQFLLEECKHKNEKSKGMYNFL*QQ---------------- 212 I + N +K + + TK + +LL + +EKSK ++ Q Sbjct: 572 IRSTEKNYFSKEEGLFTKKLDYLLLSSQTSSEKSKDQISYFNTQKILVEIDKQLDYEFID 631 Query: 213 ----IKSEDSIYFXTKNIYDNESSNLTKKNGSE 299 I S++ + NI+DN +T KNG E Sbjct: 632 KSGIIPSDNQSHPRISNIHDNAIDMVTLKNGEE 664
>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1209 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/29 (34%), Positives = 21/29 (72%) Frame = +2 Query: 11 LQMVSIQQIKYSDQAPSDQPCLQDPSNSN 97 + + ++ +I ++D P+D P LQ+P+N+N Sbjct: 558 IMITTVGKILFNDIMPADLPYLQEPNNAN 586
>SYC_BORGA (Q660S3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 480 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 193 YIPLDFSFLCLHSSNKNWMDFVLTNL 116 + PLDF +LCL S +N + F NL Sbjct: 297 FSPLDFRYLCLTSHYRNQLKFSFNNL 322
>IF2_BLOFL (Q7VQM3) Translation initiation factor IF-2| Length = 897 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/63 (23%), Positives = 32/63 (50%) Frame = +3 Query: 78 KIHPIQINLLTKIKFVRTKSIQFLLEECKHKNEKSKGMYNFL*QQIKSEDSIYFXTKNIY 257 K+ ++ NL +++ RT+++ L+++ KH N K +Y + K E + +Y Sbjct: 230 KLENVRKNLTDRLRSTRTRNLSKLVKQNKHNNSKVCMIY----ESDKDEKLYVLPSSRVY 285 Query: 258 DNE 266 N+ Sbjct: 286 KNK 288
>PSD_BACSU (P39822) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 263 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Frame = -3 Query: 143 LDGFCSNKFN------FSKQVNLNWMDLGGMAGPKG 54 + GFC +K + FSK LNW D+ G A G Sbjct: 26 IKGFCESKISKPVIPLFSKHFRLNWDDVDGTAADYG 61
>RPOC_STRPY (P0C0D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 11 LQMVSIQQIKYSDQAPSDQPCLQDPSNSN 97 + + ++ +I ++D P D P LQ+P+N+N Sbjct: 491 IMVTTVGKILFNDIMPEDLPYLQEPNNAN 519
>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 11 LQMVSIQQIKYSDQAPSDQPCLQDPSNSN 97 + + ++ +I ++D P D P LQ+P+N+N Sbjct: 558 IMVTTVGKILFNDIMPEDLPYLQEPNNAN 586
>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 11 LQMVSIQQIKYSDQAPSDQPCLQDPSNSN 97 + + ++ +I ++D P D P LQ+P+N+N Sbjct: 558 IMVTTVGKILFNDIMPEDLPYLQEPNNAN 586
>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 11 LQMVSIQQIKYSDQAPSDQPCLQDPSNSN 97 + + ++ +I ++D P D P LQ+P+N+N Sbjct: 558 IMVTTVGKILFNDIMPEDLPYLQEPNNAN 586
>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 11 LQMVSIQQIKYSDQAPSDQPCLQDPSNSN 97 + + ++ +I ++D P D P LQ+P+N+N Sbjct: 558 IMVTTVGKILFNDIMPEDLPYLQEPNNAN 586
>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = +2 Query: 11 LQMVSIQQIKYSDQAPSDQPCLQDPSNSN 97 + + ++ +I ++D P D P LQ+P+N+N Sbjct: 558 IMVTTVGKILFNDIMPEDLPYLQEPNNAN 586
>NDK6_MOUSE (O88425) Nucleoside diphosphate kinase 6 (EC 2.7.4.6) (NDK 6) (NDP| kinase 6) (nm23-M6) Length = 189 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 48 IKPLRTSHASKIHPIQINLLT-KIKFVRTKSIQFLLEECKHKNEKSKGMY 194 IKP +H + + +L+ K VRT+ +Q+ LE+C+ + +G + Sbjct: 18 IKPDAVAHPLILEAVHQQILSNKFLIVRTRELQWKLEDCRRFYREHEGRF 67
>DNAA_ONYPE (Q6YRL3) Chromosomal replication initiator protein dnaA| Length = 507 Score = 27.7 bits (60), Expect = 7.3 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +3 Query: 78 KIHPIQINLLTKIKFVRTKSIQFLLEECKHKN--EKSKGMYNFL*QQIKSEDSIYFXTKN 251 K++ +I +TK+KF I+F+ E+ K + + K + L +++++E+ YF Sbjct: 56 KMYFEKIKKITKLKFEEKIIIEFVSEKNKKNSNFDDEKKHFENLKEKLENENQTYF--SK 113 Query: 252 IYDNESSNLTKKN 290 I +NE+++ + N Sbjct: 114 IENNENNDEFQNN 126
>USP9X_MOUSE (P70398) Probable ubiquitin carboxyl-terminal hydrolase FAF-X (EC| 3.1.2.15) (Ubiquitin thioesterase FAF-X) (Ubiquitin-specific-processing protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat facets protein-related, X-linked) (Ubiquitin-specif Length = 2559 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = +3 Query: 81 IHPIQINLLTKIKFVRTKSIQFLLEECKHKNEKSK 185 I PIQ N++ I FVRT ++ ++E+C + +E K Sbjct: 2268 IMPIQQNVVD-ILFVRTSYVKKIIEDCSNSDETVK 2301
>PER2_LYCES (P15004) Suberization-associated anionic peroxidase 2 precursor (EC| 1.11.1.7) (TMP2) Length = 363 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +3 Query: 171 NEKSKGMYNFL*QQIKSEDSIYFXTKNIYDNESSNLTKKNGS 296 N+K K +L QQ+ E ++ K + D+ N T+ S Sbjct: 61 NDKKKNSDKYLSQQLTQESCVFSAVKGVVDSAIDNETRMGAS 102
>TIMD3_HUMAN (Q8TDQ0) Hepatitis A virus cellular receptor 2 precursor (HAVcr-2)| (T cell immunoglobulin and mucin domain-containing protein 3) (TIMD-3) (T cell membrane protein 3) (TIM-3) Length = 301 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +3 Query: 171 NEKSKGMYNFL*QQIKSEDSIYFXTKNIYDNESSN 275 N G+ N + + I+SE++IY +N+Y+ E N Sbjct: 244 NLPPSGLANAVAEGIRSEENIYTIEENVYEVEEPN 278
>YCF2_ANTFO (Q859W7) Protein ycf2| Length = 2392 Score = 27.3 bits (59), Expect = 9.5 Identities = 22/87 (25%), Positives = 35/87 (40%) Frame = +3 Query: 60 RTSHASKIHPIQINLLTKIKFVRTKSIQFLLEECKHKNEKSKGMYNFL*QQIKSEDSIYF 239 R++ S IH ++ LTK K K KS Y FL +DS +F Sbjct: 524 RSTTESNIHSYDLSSLTK---------------AKRKEVKSGSSYEFL-----EKDSFFF 563 Query: 240 XTKNIYDNESSNLTKKNGSEAGNQLTE 320 K + + ++TK S ++T+ Sbjct: 564 LMKENFVKDFKSITKDFFSNREKKMTD 590
>USP9Y_HUMAN (O00507) Probable ubiquitin carboxyl-terminal hydrolase FAF-Y (EC| 3.1.2.15) (Ubiquitin thioesterase FAF-Y) (Ubiquitin-specific-processing protease FAF-Y) (Deubiquitinating enzyme FAF-Y) (Fat facets protein-related, Y-linked) (Ubiquitin-specif Length = 2555 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +3 Query: 81 IHPIQINLLTKIKFVRTKSIQFLLEECKHKNEKSK 185 I PIQ N+L I FVRT ++ ++E+C + + K Sbjct: 2269 IMPIQQNVLD-ILFVRTSYVKKIIEDCSNSEDTIK 2302
>END4_AQUAE (O67551) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 282 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 87 PIQINLLTKIKFVRTKSIQFLLEECKHKNEKSKGMYNF 200 P +NL + + +R KS++ LEE K +E YNF Sbjct: 68 PYLLNLASPNEELREKSVKVFLEELKFCDEVGIHFYNF 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,849,351 Number of Sequences: 219361 Number of extensions: 834436 Number of successful extensions: 1841 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1841 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
