ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 5e-71
2dbj|AK071207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 1e-68
3gb|AY104187.1| Zea mays PCO068792 mRNA sequence 256 5e-65
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 244 2e-61
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 244 2e-61
6emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220... 244 2e-61
7emb|AL450468.6| Human DNA sequence from clone RP11-195M16 on chr... 44 0.36
8emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in l... 42 1.4
9gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map M... 40 5.6
10gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, com... 40 5.6
11gb|AC122895.5| Mus musculus BAC clone RP23-69K14 from chromosome... 40 5.6
12gb|AC099415.4| Mus musculus BAC clone RP23-122D8 from chromosome... 40 5.6
13emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 i... 40 5.6
14gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosom... 40 5.6
15gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome... 40 5.6
16gb|AC131942.1| Mus musculus BAC clone RP24-478A20 from 3, comple... 40 5.6
17emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018 40 5.6
18emb|AL591435.10| Human DNA sequence from clone RP11-712I22 on ch... 40 5.6
19gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, com... 40 5.6
20emb|AL731677.9| Mouse DNA sequence from clone RP23-41J17 on chro... 40 5.6
21gb|AC103749.2| Homo sapiens chromosome 15, clone RP11-4F5, compl... 40 5.6
22emb|BX323816.6| Zebrafish DNA sequence from clone DKEY-38N6, com... 40 5.6
23gb|AC092278.3| Homo sapiens chromosome 5 clone CTD-2012B7, compl... 40 5.6
24gb|AC108038.3| Homo sapiens BAC clone RP11-176N15 from 4, comple... 40 5.6
25emb|BX539340.7| Zebrafish DNA sequence from clone DKEY-57K2 in l... 40 5.6
26gb|AC117832.6| Homo sapiens chromosome 15, clone RP11-963M5, com... 40 5.6
27emb|BX548167.10| Zebrafish DNA sequence from clone DKEY-46L15 in... 40 5.6
28emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, ... 40 5.6
29dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23,... 40 5.6
30gb|AF240627.1|AF240627 Homo sapiens chromosome 21 map 21q21 clon... 40 5.6
31gb|AE001439.1| Helicobacter pylori J99, complete genome 40 5.6
32emb|AJ310130.1|MRO310130 Microtus rossiaemeridionalis 33kb genom... 40 5.6
33emb|AJ310129.1|MAR310129 Microtus arvalis 31kb genomic sequence ... 40 5.6
34emb|AJ310127.1|MTR310127 Microtus transcaspicus 37 kb genomic se... 40 5.6
35gb|AE000511.1| Helicobacter pylori 26695, complete genome 40 5.6
36gb|AC165443.5| Mus musculus BAC clone RP23-95F15 from chromosome... 40 5.6
37gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, comple... 40 5.6
38emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 ... 40 5.6
39emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chro... 40 5.6
40emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chrom... 40 5.6
41emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chr... 40 5.6 
>dbj|AK103925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D01, full
            insert sequence
          Length = 1631

 Score =  276 bits (139), Expect = 5e-71
 Identities = 220/247 (89%)
 Strand = Plus / Minus

                                                                        
Query: 175  agcagtctactttgactttgttatccaattcagtgaattcttcaaaatatgccttaaaat 234
            |||| |||||||| |||||| | |||||||||||||| ||||| ||||||||||| || |
Sbjct: 1491 agcaatctactttaactttgctgtccaattcagtgaactcttcgaaatatgccttgaagt 1432

                                                                        
Query: 235  gttcatatgagtgactgatgtcgtcaacggcgcacatctccctgatgctgtgcatcgaca 294
            |||| || |||||  ||||||| || || || ||||| ||||||||||||||||||||||
Sbjct: 1431 gttcgtacgagtgcttgatgtcatcgacagcacacatttccctgatgctgtgcatcgaca 1372

                                                                        
Query: 295  attgtggcgctccaacatccacagtacgaataccaacaccactagcaagtattggcccga 354
            ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 1371 attgtggtgctccaatatccacagtacgaataccaacaccactagctagtattgggccga 1312

                                                                        
Query: 355  ttgttgacccacaagccatgtcgttgcgaacaacaaaatcctgaataggtagctggtgcc 414
            | ||||| |||||| |||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1311 tggttgaaccacaacccatgtcgttccgaacaacaaaatcctgtataggtagatggtgcc 1252

                   
Query: 415  tctcagc 421
            |||||||
Sbjct: 1251 tctcagc 1245
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>dbj|AK071207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088P07, full
            insert sequence
          Length = 1731

 Score =  268 bits (135), Expect = 1e-68
 Identities = 219/247 (88%)
 Strand = Plus / Minus

                                                                        
Query: 175  agcagtctactttgactttgttatccaattcagtgaattcttcaaaatatgccttaaaat 234
            |||| |||||||| |||||| | |||||||||||||| ||||| ||||||||||| || |
Sbjct: 1587 agcaatctactttaactttgctgtccaattcagtgaactcttcgaaatatgccttgaagt 1528

                                                                        
Query: 235  gttcatatgagtgactgatgtcgtcaacggcgcacatctccctgatgctgtgcatcgaca 294
            |||| || |||||  ||||||| || || || ||||| ||||||||||||||||||||||
Sbjct: 1527 gttcgtacgagtgcttgatgtcatcgacagcacacatttccctgatgctgtgcatcgaca 1468

                                                                        
Query: 295  attgtggcgctccaacatccacagtacgaataccaacaccactagcaagtattggcccga 354
            ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 1467 attgtggtgctccaatatccacagtacgaataccaacaccactagctagtattgggccga 1408

                                                                        
Query: 355  ttgttgacccacaagccatgtcgttgcgaacaacaaaatcctgaataggtagctggtgcc 414
            | ||||| |||||| |||||||||| |||||| |||||||||| |||||||| |||||||
Sbjct: 1407 tggttgaaccacaacccatgtcgttccgaacagcaaaatcctgtataggtagatggtgcc 1348

                   
Query: 415  tctcagc 421
            |||||||
Sbjct: 1347 tctcagc 1341
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>gb|AY104187.1| Zea mays PCO068792 mRNA sequence
          Length = 1046

 Score =  256 bits (129), Expect = 5e-65
 Identities = 201/225 (89%)
 Strand = Plus / Minus

                                                                       
Query: 197 atccaattcagtgaattcttcaaaatatgccttaaaatgttcatatgagtgactgatgtc 256
           |||||||||||| |||||||||||||||||||| ||||| ||||||||||  || || ||
Sbjct: 866 atccaattcagtaaattcttcaaaatatgccttgaaatgctcatatgagtagctaatatc 807

                                                                       
Query: 257 gtcaacggcgcacatctccctgatgctgtgcatcgacaattgtggcgctccaacatccac 316
           |||| |||| ||||| || |||||||||||||| || ||||| || ||||||| ||| ||
Sbjct: 806 gtcagcggcacacatttctctgatgctgtgcattgataattggggtgctccaatatcaac 747

                                                                       
Query: 317 agtacgaataccaacaccactagcaagtattggcccgattgttgacccacaagccatgtc 376
           ||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 746 agtgcgaataccaacaccactagcaagtattgggccaattgttgaaccacaagccatgtc 687

                                                        
Query: 377 gttgcgaacaacaaaatcctgaataggtagctggtgcctctcagc 421
            |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 686 attgcgaacaacaaaatcctgtataggtagctggtgtctctcagc 642
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  244 bits (123), Expect = 2e-61
 Identities = 198/223 (88%)
 Strand = Plus / Plus

                                                                           
Query: 175     agcagtctactttgactttgttatccaattcagtgaattcttcaaaatatgccttaaaat 234
               |||| |||||||| |||||| | |||||||||||||| ||||| ||||||||||| || |
Sbjct: 7483599 agcaatctactttaactttgctgtccaattcagtgaactcttcgaaatatgccttgaagt 7483658

                                                                           
Query: 235     gttcatatgagtgactgatgtcgtcaacggcgcacatctccctgatgctgtgcatcgaca 294
               |||| || |||||  ||||||| || || || ||||| ||||||||||||||||||||||
Sbjct: 7483659 gttcgtacgagtgcttgatgtcatcgacagcacacatttccctgatgctgtgcatcgaca 7483718

                                                                           
Query: 295     attgtggcgctccaacatccacagtacgaataccaacaccactagcaagtattggcccga 354
               ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 7483719 attgtggtgctccaatatccacagtacgaataccaacaccactagctagtattgggccga 7483778

                                                          
Query: 355     ttgttgacccacaagccatgtcgttgcgaacaacaaaatcctg 397
               | ||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 7483779 tggttgaaccacaacccatgtcgttccgaacaacaaaatcctg 7483821



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 394     cctgaataggtagctggtgcctctcagc 421
               |||| |||||||| ||||||||||||||
Sbjct: 7484135 cctgtataggtagatggtgcctctcagc 7484162
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  244 bits (123), Expect = 2e-61
 Identities = 198/223 (88%)
 Strand = Plus / Plus

                                                                           
Query: 175     agcagtctactttgactttgttatccaattcagtgaattcttcaaaatatgccttaaaat 234
               |||| |||||||| |||||| | |||||||||||||| ||||| ||||||||||| || |
Sbjct: 7483478 agcaatctactttaactttgctgtccaattcagtgaactcttcgaaatatgccttgaagt 7483537

                                                                           
Query: 235     gttcatatgagtgactgatgtcgtcaacggcgcacatctccctgatgctgtgcatcgaca 294
               |||| || |||||  ||||||| || || || ||||| ||||||||||||||||||||||
Sbjct: 7483538 gttcgtacgagtgcttgatgtcatcgacagcacacatttccctgatgctgtgcatcgaca 7483597

                                                                           
Query: 295     attgtggcgctccaacatccacagtacgaataccaacaccactagcaagtattggcccga 354
               ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 7483598 attgtggtgctccaatatccacagtacgaataccaacaccactagctagtattgggccga 7483657

                                                          
Query: 355     ttgttgacccacaagccatgtcgttgcgaacaacaaaatcctg 397
               | ||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 7483658 tggttgaaccacaacccatgtcgttccgaacaacaaaatcctg 7483700



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 394     cctgaataggtagctggtgcctctcagc 421
               |||| |||||||| ||||||||||||||
Sbjct: 7484014 cctgtataggtagatggtgcctctcagc 7484041
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>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 98782

 Score =  244 bits (123), Expect = 2e-61
 Identities = 198/223 (88%)
 Strand = Plus / Plus

                                                                         
Query: 175   agcagtctactttgactttgttatccaattcagtgaattcttcaaaatatgccttaaaat 234
             |||| |||||||| |||||| | |||||||||||||| ||||| ||||||||||| || |
Sbjct: 73275 agcaatctactttaactttgctgtccaattcagtgaactcttcgaaatatgccttgaagt 73334

                                                                         
Query: 235   gttcatatgagtgactgatgtcgtcaacggcgcacatctccctgatgctgtgcatcgaca 294
             |||| || |||||  ||||||| || || || ||||| ||||||||||||||||||||||
Sbjct: 73335 gttcgtacgagtgcttgatgtcatcgacagcacacatttccctgatgctgtgcatcgaca 73394

                                                                         
Query: 295   attgtggcgctccaacatccacagtacgaataccaacaccactagcaagtattggcccga 354
             ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 73395 attgtggtgctccaatatccacagtacgaataccaacaccactagctagtattgggccga 73454

                                                        
Query: 355   ttgttgacccacaagccatgtcgttgcgaacaacaaaatcctg 397
             | ||||| |||||| |||||||||| |||||||||||||||||
Sbjct: 73455 tggttgaaccacaacccatgtcgttccgaacaacaaaatcctg 73497



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 394   cctgaataggtagctggtgcctctcagc 421
             |||| |||||||| ||||||||||||||
Sbjct: 73811 cctgtataggtagatggtgcctctcagc 73838
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>emb|AL450468.6| Human DNA sequence from clone RP11-195M16 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene and the CSF1 gene for
             colony stimulating factor 1 (macrophage), complete
             sequence
          Length = 116796

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 218   aaaatatgccttaaaatgttcatatg 243
             |||||| |||||||||||||||||||
Sbjct: 27806 aaaataggccttaaaatgttcatatg 27781
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>emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1, complete
              sequence
          Length = 219280

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    attcttcaaaatatgccttaa 231
              |||||||||||||||||||||
Sbjct: 162762 attcttcaaaatatgccttaa 162742
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>gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map MAP_LOC, complete
             sequence
          Length = 73587

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ttctcaaacattatataatc 67
             ||||||||||||||||||||
Sbjct: 16951 ttctcaaacattatataatc 16970
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>gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, complete sequence
          Length = 148599

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   aattcagtgaattcttcaaa 220
             ||||||||||||||||||||
Sbjct: 90876 aattcagtgaattcttcaaa 90857
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>gb|AC122895.5| Mus musculus BAC clone RP23-69K14 from chromosome 18, complete sequence
          Length = 215539

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    caacatccacagtacgaata 326
              ||||||||||||||||||||
Sbjct: 162573 caacatccacagtacgaata 162554
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>gb|AC099415.4| Mus musculus BAC clone RP23-122D8 from chromosome 8, complete sequence
          Length = 215488

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    tgttctcaaacattatataa 65
             ||||||||||||||||||||
Sbjct: 86499 tgttctcaaacattatataa 86518
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>emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 in linkage group 6,
             complete sequence
          Length = 236737

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   ctgtgtttgtgaaagtacag 120
             ||||||||||||||||||||
Sbjct: 11923 ctgtgtttgtgaaagtacag 11904
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>gb|AC132426.3| Mus musculus BAC clone RP23-312J19 from chromosome 2, complete sequence
          Length = 189633

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   aattcttcaaaatatgccttaaaa 233
             ||||||||||||||||| ||||||
Sbjct: 79330 aattcttcaaaatatgctttaaaa 79307
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>gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome 1, complete sequence
          Length = 230067

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gactttgttatccaattcag 207
              ||||||||||||||||||||
Sbjct: 163795 gactttgttatccaattcag 163814
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>gb|AC131942.1| Mus musculus BAC clone RP24-478A20 from 3, complete sequence
          Length = 209411

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   caaaatatgccttaaaatgt 236
             ||||||||||||||||||||
Sbjct: 29919 caaaatatgccttaaaatgt 29938
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>emb|AL163218.2|HS21C018 Homo sapiens chromosome 21 segment HS21C018
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    aaaatatgccttaaaatgtt 237
              ||||||||||||||||||||
Sbjct: 228525 aaaatatgccttaaaatgtt 228506
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>emb|AL591435.10| Human DNA sequence from clone RP11-712I22 on chromosome X, complete
              sequence
          Length = 138038

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     gatttattcatgtgttctca 53
              ||||||||||||||||||||
Sbjct: 117247 gatttattcatgtgttctca 117266
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>gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, complete sequence
          Length = 181930

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    aattcagtgaattcttcaaa 220
              ||||||||||||||||||||
Sbjct: 130905 aattcagtgaattcttcaaa 130886
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>emb|AL731677.9| Mouse DNA sequence from clone RP23-41J17 on chromosome 11, complete
             sequence
          Length = 97297

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    ttattcatgtgttctcaaacatta 60
             |||||||||| |||||||||||||
Sbjct: 20288 ttattcatgtattctcaaacatta 20311
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>gb|AC103749.2| Homo sapiens chromosome 15, clone RP11-4F5, complete sequence
          Length = 190678

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 220   aatatgccttaaaatgttcatatgagtg 247
             ||||||||||||||  ||||||||||||
Sbjct: 98110 aatatgccttaaaaacttcatatgagtg 98083
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>emb|BX323816.6| Zebrafish DNA sequence from clone DKEY-38N6, complete sequence
          Length = 190532

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctgtgtttgtgaaagtacag 120
              ||||||||||||||||||||
Sbjct: 153841 ctgtgtttgtgaaagtacag 153860
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>gb|AC092278.3| Homo sapiens chromosome 5 clone CTD-2012B7, complete sequence
          Length = 123469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   atatgccttaaaatgttcat 240
             ||||||||||||||||||||
Sbjct: 30078 atatgccttaaaatgttcat 30059
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>gb|AC108038.3| Homo sapiens BAC clone RP11-176N15 from 4, complete sequence
          Length = 140854

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 219   aaatatgccttaaaatgttcatat 242
             |||||||||| |||||||||||||
Sbjct: 88146 aaatatgcctgaaaatgttcatat 88123
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>emb|BX539340.7| Zebrafish DNA sequence from clone DKEY-57K2 in linkage group 2, complete
              sequence
          Length = 234470

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    aattcagtgaattcttcaaa 220
              ||||||||||||||||||||
Sbjct: 166572 aattcagtgaattcttcaaa 166591
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>gb|AC117832.6| Homo sapiens chromosome 15, clone RP11-963M5, complete sequence
          Length = 171462

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 220   aatatgccttaaaatgttcatatgagtg 247
             ||||||||||||||  ||||||||||||
Sbjct: 15914 aatatgccttaaaaacttcatatgagtg 15941
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>emb|BX548167.10| Zebrafish DNA sequence from clone DKEY-46L15 in linkage group 20,
              complete sequence
          Length = 135292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     attcatgtgttctcaaacat 58
              ||||||||||||||||||||
Sbjct: 120907 attcatgtgttctcaaacat 120888
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>emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, complete sequence
          Length = 170736

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   aaatatgccttaaaatgttcatat 242
             |||| |||||||||||||||||||
Sbjct: 88487 aaatttgccttaaaatgttcatat 88510
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>dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23, map 22, complete
             sequences
          Length = 179114

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   aaaatatgccttaaaatgtt 237
             ||||||||||||||||||||
Sbjct: 30256 aaaatatgccttaaaatgtt 30237
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>gb|AF240627.1|AF240627 Homo sapiens chromosome 21 map 21q21 clone B650K3, complete sequence
          Length = 170770

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    aaaatatgccttaaaatgtt 237
              ||||||||||||||||||||
Sbjct: 130681 aaaatatgccttaaaatgtt 130662
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    taccaacaccactagcaagt 344
              ||||||||||||||||||||
Sbjct: 386407 taccaacaccactagcaagt 386388
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>emb|AJ310130.1|MRO310130 Microtus rossiaemeridionalis 33kb genomic sequence encoding Xist gene,
             complete sequence
          Length = 33026

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   aacaacaaaatcctgaatag 402
             ||||||||||||||||||||
Sbjct: 10355 aacaacaaaatcctgaatag 10336
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>emb|AJ310129.1|MAR310129 Microtus arvalis 31kb genomic sequence encoding Xist gene, complete
            sequence
          Length = 31277

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  aacaacaaaatcctgaatag 402
            ||||||||||||||||||||
Sbjct: 7050 aacaacaaaatcctgaatag 7031
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>emb|AJ310127.1|MTR310127 Microtus transcaspicus 37 kb genomic sequence encoding Xist gene,
             complete sequence
          Length = 37120

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   aacaacaaaatcctgaatag 402
             ||||||||||||||||||||
Sbjct: 11242 aacaacaaaatcctgaatag 11223
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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     taccaacaccactagcaagt 344
               ||||||||||||||||||||
Sbjct: 1129965 taccaacaccactagcaagt 1129984
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>gb|AC165443.5| Mus musculus BAC clone RP23-95F15 from chromosome 1, complete
            sequence
          Length = 174254

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  gactttgttatccaattcag 207
            ||||||||||||||||||||
Sbjct: 1311 gactttgttatccaattcag 1330
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>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence
          Length = 197108

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 70     acattactaattgttatgcattat 93
              |||||||| |||||||||||||||
Sbjct: 131163 acattactcattgttatgcattat 131140
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>emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 on chromosome 3,
             complete sequence
          Length = 139040

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    attactaattgttatgcatt 91
             ||||||||||||||||||||
Sbjct: 49076 attactaattgttatgcatt 49095
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>emb|AL928811.8| Mouse DNA sequence from clone RP23-74P23 on chromosome 2, complete
             sequence
          Length = 222061

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   aattcttcaaaatatgccttaaaa 233
             ||||||||||||||||| ||||||
Sbjct: 72879 aattcttcaaaatatgctttaaaa 72856
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>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete
             sequence
          Length = 189829

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   aaaatatgccttaaaatgtt 237
             ||||||||||||||||||||
Sbjct: 87516 aaaatatgccttaaaatgtt 87535
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>emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chromosome X, complete
              sequence
          Length = 231530

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    caggagagctactgagccaa 153
              ||||||||||||||||||||
Sbjct: 221329 caggagagctactgagccaa 221348


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,807,426
Number of Sequences: 3902068
Number of extensions: 3807426
Number of successful extensions: 81957
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81819
Number of HSP's gapped (non-prelim): 138
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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