>PREA_CYAPA (P31171) Prenyl transferase (EC 2.5.1.-)|
          Length = 323

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 20/53 (37%), Positives = 35/53 (66%)
 Frame = -3

Query: 440 LQKSRGIERTKELAQEHVNLAVKAIESLPDSDDEDVLISRRALIDITQRVITR 282
           +++++ IE+T+ELA EH  +A++ +E+LP S       S+ AL  IT+ V+ R
Sbjct: 275 VEETKAIEKTRELAMEHAQVAIQCLENLPPSS------SKEALKLITKYVLER 321

>COQ1_NEUCR (Q7S565) Probable hexaprenyl pyrophosphate synthetase,|
           mitochondrial precursor (EC 2.5.1.-) (HPS)
          Length = 449

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 17/36 (47%), Positives = 26/36 (72%)
 Frame = -3

Query: 434 KSRGIERTKELAQEHVNLAVKAIESLPDSDDEDVLI 327
           +S GIE+T+ LAQ++   A++AI   PDS+ +D LI
Sbjct: 403 QSNGIEQTRALAQDYAEKAIEAISGFPDSEAKDGLI 438

>COQ1_YARLI (Q6CBH3) Probable hexaprenyl pyrophosphate synthetase,|
           mitochondrial precursor (EC 2.5.1.-) (HPS)
          Length = 452

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 20/55 (36%), Positives = 37/55 (67%)
 Frame = -3

Query: 440 LQKSRGIERTKELAQEHVNLAVKAIESLPDSDDEDVLISRRALIDITQRVITRTK 276
           +Q++ G+ RT+ELAQ++ + AV  ++ LP S+      SR AL ++T +++ R+K
Sbjct: 404 VQQADGLSRTRELAQKYCDEAVANLDLLPYSE------SREALRNLTMKMMNRSK 452

>PPGB_HUMAN (P10619) Lysosomal protective protein precursor (EC 3.4.16.5)|
           (Cathepsin A) (Carboxypeptidase C) (Protective protein
           for beta-galactosidase) [Contains: Lysosomal protective
           protein 32 kDa chain; Lysosomal protective protein 20
           kDa chain]
          Length = 480

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 79  PPVTKTTIAATMTIPRNGYPEVSSNVTQKLGQWKECN 189
           PP T TT A+T     N Y   + N+ ++L QW  CN
Sbjct: 329 PPCTNTTAASTYL--NNPYVRKALNIPEQLPQWDMCN 363

>G3P_RALSO (P52694) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)|
           (GAPDH)
          Length = 332

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 434 KSRGIERTKELAQEHVNL-AVKAIESLPDSDDEDVLI 327
           +S GI  TKE AQ+H++  A K I S P  DD  + +
Sbjct: 96  ESTGIFLTKEGAQKHIDAGAKKVIMSAPSKDDTPMFV 132

>SIP1_HUMAN (O60315) Zinc finger homeobox protein 1b (Smad-interacting protein|
           1) (SMADIP1)
          Length = 1214

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 128 MVTLK----SHQMLHKNSGNGKNAMTKASKIFQVEHYTGE 235
           MVT K     HQML + +GN K   T+  K F+ +H+  E
Sbjct: 260 MVTHKPGTDQHQMLTQGAGNRKFKCTECGKAFKYKHHLKE 299

>PYRD_PSESM (Q883P1) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 343

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 416 RTKELAQEHVNLAVKAIESLPDSDDEDVLISRRALIDITQRVITRTK*QDYTQGGE 249
           R +EL Q H      AI+  PD  DE+ ++   ALI+     +  T      QG E
Sbjct: 199 RQQELTQRHGKRVPLAIKIAPDMTDEETVLVAAALIESGMDAVIATNTTLSRQGVE 254

>SIP1_MOUSE (Q9R0G7) Zinc finger homeobox protein 1b (Smad-interacting protein|
           1)
          Length = 1215

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 128 MVTLK----SHQMLHKNSGNGKNAMTKASKIFQVEHYTGE 235
           MVT K     HQML + +GN K   T+  K F+ +H+  E
Sbjct: 260 MVTHKPGTDQHQMLTQGAGNRKFKCTECGKAFKYKHHLKE 299

>MCM6Z_XENTR (Q6P1V8) Zygotic DNA replication licensing factor mcm6 (Zygotic|
           minichromosome maintenance protein 6) (zMCM6)
          Length = 823

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 440 LQKSRGIERTKELAQEHVNLAVKAIESLPDSDDEDVLISRRALID 306
           L+K    + T +   E +N  +K IES  DS++E  L++R+ +ID
Sbjct: 734 LRKMEDEDETSQRKSELINWYLKEIESEIDSEEE--LVTRKQIID 776


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,631,383
Number of Sequences: 219361
Number of extensions: 1159437
Number of successful extensions: 3622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3622
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)