>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 211

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 42/85 (49%), Positives = 58/85 (68%)
 Frame = -1

Query: 600 FKVDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYG 421
           + ++ F   EL+VNIT+H L P H V+TAEEKA+LL  Y + DSQLPR+ + D VARY+G
Sbjct: 126 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFG 185

Query: 420 LGKGTVVKFTYDNELTVDHVTYRCI 346
           L +G VVK    +E    ++TYR +
Sbjct: 186 LRRGQVVKIIRPSETAGRYITYRLV 210

>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 212

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 40/81 (49%), Positives = 53/81 (65%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           +D FQ T+LLVNITKHVL P H  L+  EK  LL+ Y + +SQLPR+   D VARY GL 
Sbjct: 129 IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLGLR 188

Query: 414 KGTVVKFTYDNELTVDHVTYR 352
           +G +VK    +E +  + +YR
Sbjct: 189 RGQIVKIIRRSETSGRYASYR 209

>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polypeptide (EC|
           2.7.7.6) (RPB25) (RPB5) (RPABC1)
          Length = 210

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 37/85 (43%), Positives = 54/85 (63%)
 Frame = -1

Query: 600 FKVDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYG 421
           + ++ F   ELL+NIT+H L P H V+T EE  +LL  Y + +SQLPR+   D VARY+G
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFG 184

Query: 420 LGKGTVVKFTYDNELTVDHVTYRCI 346
           + +G VVK    +E    ++TYR +
Sbjct: 185 IKRGQVVKIIRPSETAGRYITYRLV 209

>RPB5_PONPY (Q5R587) DNA-directed RNA polymerase II 23 kDa polypeptide (EC|
           2.7.7.6) (RPB25) (RPB5) (RPABC1)
          Length = 210

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 36/83 (43%), Positives = 53/83 (63%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ F   ELL+NIT+H L P H V+T EE  +LL  Y + ++QLPR+   D VARY+G+ 
Sbjct: 127 LEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIK 186

Query: 414 KGTVVKFTYDNELTVDHVTYRCI 346
           +G VVK    +E    ++TYR +
Sbjct: 187 RGQVVKIIRPSETAGRYITYRLV 209

>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polypeptide (EC|
           2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4)
          Length = 210

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 36/83 (43%), Positives = 53/83 (63%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ F   ELL+NIT+H L P H V+T EE  +LL  Y + ++QLPR+   D VARY+G+ 
Sbjct: 127 LEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIK 186

Query: 414 KGTVVKFTYDNELTVDHVTYRCI 346
           +G VVK    +E    ++TYR +
Sbjct: 187 RGQVVKIIRPSETAGRYITYRLV 209

>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 210

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 36/83 (43%), Positives = 54/83 (65%)
 Frame = -1

Query: 600 FKVDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYG 421
           F ++ FQ ++L+VNIT H L P H +L+ +EK +LL  Y + ++QLPR+   D VARY G
Sbjct: 125 FTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLG 184

Query: 420 LGKGTVVKFTYDNELTVDHVTYR 352
           L +G VVK    +E +  + +YR
Sbjct: 185 LKRGEVVKIVRRSETSGRYNSYR 207

>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 37/81 (45%), Positives = 50/81 (61%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ F  T L+VNIT H L P H  L+ EEK +LLK Y + +SQLPR+   D VA Y GL 
Sbjct: 132 IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLGLK 191

Query: 414 KGTVVKFTYDNELTVDHVTYR 352
           +G VVK    +E +  + +YR
Sbjct: 192 RGEVVKIIRKSETSGRYASYR 212

>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ F    L+VNIT H L P H  L  EEKA+LLK Y + +SQLPR+   D VA Y GL 
Sbjct: 132 IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYLGLK 191

Query: 414 KGTVVKFTYDNELTVDHVTYR 352
           +G VVK    +E    + +YR
Sbjct: 192 RGEVVKIIRKSETAGRYASYR 212

>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27 kDa|
           polypeptide (EC 2.7.7.6) (ABC27)
          Length = 215

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ F    L+VNIT H L P H  L+++EK +LLK Y + +SQLPR+   D VA Y GL 
Sbjct: 132 IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLK 191

Query: 414 KGTVVKFTYDNELTVDHVTYR 352
           +G VVK    +E +  + +YR
Sbjct: 192 RGEVVKIIRKSETSGRYASYR 212

>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 214

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ FQ  +L+VNIT H L P H  L  +EK +LL+ Y + +SQLPR+   D V RY GL 
Sbjct: 131 IETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDPVGRYLGLK 190

Query: 414 KGTVVKFTYDNELTVDHVTYR 352
           +G VVK    +E +  + +YR
Sbjct: 191 RGEVVKIIRRSETSGRYASYR 211

>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 34/81 (41%), Positives = 48/81 (59%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ F    L+VNIT H L P H  L+  EK +LLK Y + +SQLPR+   D VA Y GL 
Sbjct: 132 IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPVALYLGLK 191

Query: 414 KGTVVKFTYDNELTVDHVTYR 352
           +G V+K    +E +  + +YR
Sbjct: 192 RGEVIKIIRKSETSGRYASYR 212

>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 215

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 34/81 (41%), Positives = 48/81 (59%)
 Frame = -1

Query: 594 VDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLG 415
           ++ F    L+VNIT H L P H  L+  EK +LLK Y + +SQLPR+   D VA Y GL 
Sbjct: 132 IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPVALYLGLK 191

Query: 414 KGTVVKFTYDNELTVDHVTYR 352
           +G V+K    +E +  + +YR
Sbjct: 192 RGEVIKIIRKSETSGRYASYR 212

>RPOH_SULAC (P11521) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 84

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 28/73 (38%), Positives = 42/73 (57%)
 Frame = -1

Query: 564 VNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYD 385
           ++I+ H L P HE+L  EE  KL+KE  +   QLP +  +D VA+  G   G ++K T  
Sbjct: 9   IDISNHELVPKHEILQLEEAYKLVKELGIKPEQLPWIRASDPVAKSIGAKPGDIIKITRK 68

Query: 384 NELTVDHVTYRCI 346
           +  T + VTYR +
Sbjct: 69  SPFTGESVTYRYV 81

>RPOH_SULTO (Q976A3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 84

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 46/77 (59%)
 Frame = -1

Query: 576 TELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVK 397
           +++ ++ ++H L P HEVL+ EE  K+LKE  +   QLP +  +D +A+  G   G ++K
Sbjct: 5   SKIKIDPSQHELVPKHEVLSIEEAYKILKELGIKPEQLPWIRASDPIAKLVGAKPGDIIK 64

Query: 396 FTYDNELTVDHVTYRCI 346
            T  + L+ + V YR +
Sbjct: 65  ITRKSSLSGEVVVYRYV 81

>RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 24/73 (32%), Positives = 40/73 (54%)
 Frame = -1

Query: 564 VNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYD 385
           + +T H+L P HE++  EE  ++LK YN+   QLP++ E D V +  G  +G VV+    
Sbjct: 1   MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60

Query: 384 NELTVDHVTYRCI 346
           +      + YR +
Sbjct: 61  SPTAGVSIAYRLV 73

>RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC 2.7.7.6) (RPB5)|
          Length = 77

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 26/71 (36%), Positives = 38/71 (53%)
 Frame = -1

Query: 558 ITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDNE 379
           I KH L P H +L   E  ++LKE +    QLP++  TD VA+  G  +G +VK    + 
Sbjct: 5   ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64

Query: 378 LTVDHVTYRCI 346
              + VTYR +
Sbjct: 65  TAEEFVTYRLV 75

>RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 23/72 (31%), Positives = 39/72 (54%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDN 382
           NI KHVL P H +L+ EEK  LL++Y +  +QLP++  +D   +  G   G +++    +
Sbjct: 8   NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67

Query: 381 ELTVDHVTYRCI 346
                +  YR +
Sbjct: 68  PTAGVYYYYRVV 79

>RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 23/72 (31%), Positives = 39/72 (54%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDN 382
           NI KHVL P H +L+ EEK  LL++Y +  +QLP++  +D   +  G   G +++    +
Sbjct: 8   NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67

Query: 381 ELTVDHVTYRCI 346
                +  YR +
Sbjct: 68  PTAGVYYYYRVV 79

>RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 76

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/68 (36%), Positives = 37/68 (54%)
 Frame = -1

Query: 549 HVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDNELTV 370
           H+L P HEVL+ EE  +LLK   +   QLP++   D +A+  G   G +VK T  +    
Sbjct: 8   HMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITRKSLTAG 67

Query: 369 DHVTYRCI 346
           + V YR +
Sbjct: 68  ESVFYRLV 75

>RPOH_PYRKO (Q5JE31) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDN 382
           NI  HVL P H +L+ EEK +LLK+Y +  SQLP++  +D      G   G V++    +
Sbjct: 8   NIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKS 67

Query: 381 ELTVDHVTYRCI 346
                +  YR +
Sbjct: 68  PTAGYYYYYRLV 79

>RPOH_METMP (P61519) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 39/73 (53%)
 Frame = -1

Query: 564 VNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYD 385
           + I+ H + P HE++  EE   LL++Y++   Q P++L+TD +    G   G VVK T  
Sbjct: 1   MKISSHEMVPTHEIIPREEIPLLLEKYSIKMQQFPKLLDTDPLVLEIGATPGDVVKITRM 60

Query: 384 NELTVDHVTYRCI 346
           +    +   YR +
Sbjct: 61  SPTAGESTYYRLV 73

>RPOH_SULSO (Q980Q9) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 84

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = -1

Query: 549 HVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDNELTV 370
           H L P HEVL  +E  K+LKE  +   QLP +  +D VAR      G +++    ++L  
Sbjct: 14  HYLVPKHEVLNIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73

Query: 369 DHVTYRCI 346
           + V+YR +
Sbjct: 74  EVVSYRYV 81

>RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 38/72 (52%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDN 382
           +I  HVL P H VL+ EEK  LL++Y +  +QLP++  +D   +  G   G V++    +
Sbjct: 8   SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEIKRKS 67

Query: 381 ELTVDHVTYRCI 346
                +  YR +
Sbjct: 68  PTAGVYYYYRVV 79

>RPOH_METVA (P41559) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 19/73 (26%), Positives = 39/73 (53%)
 Frame = -1

Query: 564 VNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYD 385
           + ++ H + P HE++  +E   LL++Y +   Q P++L +D +    G   G +VK T  
Sbjct: 1   MKVSSHEMVPEHEIIPGDEIPFLLEKYGIKIQQFPKLLISDPLVIEVGAKVGDIVKITRK 60

Query: 384 NELTVDHVTYRCI 346
           ++   + V +R +
Sbjct: 61  SQTAGETVYFRLV 73

>RPO5_MIMIV (Q5UPX7) DNA-directed RNA polymerase subunit 5 (EC 2.7.7.6)|
          Length = 205

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 17/81 (20%), Positives = 40/81 (49%)
 Frame = -1

Query: 588 VFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKG 409
           +F+  E L ++  +  +P  ++L+  E   +  EYN     L +++ +D + RY+ L K 
Sbjct: 124 IFKEHEFLADLLSNEFQPRFQLLSPSEMESVKTEYNANPYTLKKIVRSDPIVRYFALKKN 183

Query: 408 TVVKFTYDNELTVDHVTYRCI 346
            +++    +  +   + YR +
Sbjct: 184 DIIRIIRPSATSGQGIDYRVV 204

>RPOH_METKA (Q8TXI5) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 92

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
 Frame = -1

Query: 558 ITKHVLKPNHEVLTAEEK-AKLLKEYNVVDSQLPRMLETD--AVARYYGLGK----GTVV 400
           +  HVL P HEV+  EE+  K+L+E  V    LPR+   D   VA    LGK    G++V
Sbjct: 10  VLNHVLVPKHEVIDDEEEIEKILEELGVEKDDLPRIHTNDPVVVALSEKLGKRIKPGSLV 69

Query: 399 KFTYDNELTVDHVTYRCI 346
           K   D+      V YR +
Sbjct: 70  KIVRDSPTAGKTVVYRVV 87

>RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 82

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDN 382
           +I  H L P H +L+ EE  +LL+ Y +  SQLP++  +D      G   G V++    +
Sbjct: 8   DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDVLEIKRKS 67

Query: 381 ELTVDHVTYRCI 346
                +  YR +
Sbjct: 68  RTAGYYYYYRLV 79

>RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDN 382
           ++  H   P HE+++  E   +L +Y +   QLP++   D V +  G   G VVK T  +
Sbjct: 5   SLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKS 64

Query: 381 ELTVDHVTYRCI 346
           +   +   YR +
Sbjct: 65  QTAGEADYYRLV 76

>RPOH_THEVO (Q979F2) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 87

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAV-----ARYYGLGKGTVVK 397
           N+  H L P H +++ EE+  +LKE  +    LPR+   D V     A +  +  GTV+K
Sbjct: 5   NVLDHNLVPEHHIVSEEEEKTILKELGIEKEFLPRISPNDPVIKALEAIHGKIKDGTVIK 64

Query: 396 FTYDNELTVDHVTYRCI 346
              ++      V YR +
Sbjct: 65  IIRNSPTMGHSVYYRVV 81

>RPOH_THEAC (Q03588) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 87

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETD----AVARYYG-LGKGTVVK 397
           N+  H L P H ++  EE+  +LKE N+    LP++   D    A+   +G + +GT++K
Sbjct: 5   NVLDHNLVPEHHIVPEEEEKNILKELNIEKEFLPKISPNDPAIKALEAVHGKIKEGTIIK 64

Query: 396 FTYDNELTVDHVTYRCI 346
               +      V YR +
Sbjct: 65  IVRKSPTMGHSVYYRVV 81

>RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 78

 Score = 37.7 bits (86), Expect = 0.026
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = -1

Query: 561 NITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDN 382
           ++  H   P HE+++  E   +L +Y +   QLP++   D V++  G   G VV+ T  +
Sbjct: 5   SLLDHESVPKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKS 64

Query: 381 ELTVDHVTYRCI 346
           +   +   YR +
Sbjct: 65  QTAGEADYYRLV 76

>RPOH_HALSA (P15740) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 75

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 22/74 (29%), Positives = 39/74 (52%)
 Frame = -1

Query: 567 LVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTY 388
           +V++++H L P H VL  E    +L +Y++  ++LP++   D  A       G VV+   
Sbjct: 1   MVDVSQHELVPEHTVLDEETLDGVLADYDIDRTELPKIKYKDP-ALPDNAEIGDVVEIVR 59

Query: 387 DNELTVDHVTYRCI 346
           D+  T + V YR +
Sbjct: 60  DSRTTDEAVVYRLV 73

>RPOH_AERPE (Q9YAT3) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 90

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 558 ITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFT 391
           I +H   P H +L+ EE  ++LK   +   QLP++   D +AR      G +++ T
Sbjct: 12  ILEHEYVPEHRLLSIEEAVQVLKMLGIKPWQLPKISVNDPIARLLKAKPGDIIEIT 67

>RPOH_PYRAE (Q8ZYR0) DNA-directed RNA polymerase subunit H (EC 2.7.7.6)|
          Length = 75

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -1

Query: 525 VLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVVKFTYDNELTVDHVTYRCI 346
           V+  EE  +LLK   +   QLP +  +D +A+  G   G V+K   ++    + V YR +
Sbjct: 13  VIPREEAKELLKRMKLRPWQLPWIRASDPLAQKAGAKPGDVLKIVRESPTAGEAVVYRLV 72

>CAPP_LACAC (Q5FK38) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 912

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 558 ITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRM 454
           I +H++     V    E+A +LKEYN+VDS+  R+
Sbjct: 491 IKQHIISHTESVSDMLEQAIMLKEYNLVDSEKARI 525

>TNR6_BOVIN (P51867) Tumor necrosis factor receptor superfamily member 6|
           precursor (FASLG receptor) (Apoptosis-mediating surface
           antigen FAS) (Apo-1 antigen) (CD95 antigen)
          Length = 323

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 547 CPEAQS*SADCRRKSKAPEGVQC---GGFTVASHARDRCC-CSL 428
           CP  +  + DC+R    PE V C     +T  SH  D+C  CS+
Sbjct: 60  CPPGKRKNGDCKRDGDTPECVLCSEGNEYTDKSHHSDKCIRCSI 103

>SYE_ARCFU (O29979) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 551

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 528 EVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGKGTVV 400
           E L+ E + +L+K+Y++ DS+  R LET  +    G  KG VV
Sbjct: 54  EALSEEVRKELIKKYSM-DSEAKRELETKKLPELEGAEKGKVV 95

>ACPS_CHLPN (Q9Z8M5) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 122

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -1

Query: 591 DVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQLPRMLETDAVARYYGLGK 412
           D+ +I+ +   I  H  +  + + T  E+   L++ + + S   R    +AVA+  G G 
Sbjct: 9   DIIEISRIREAIATHGNRLLNRIFTEAEQKYCLEKTDPIPSFAGRFAGKEAVAKALGTGI 68

Query: 411 GTVVKFTYDNELTVDH 364
           G+VV +       V H
Sbjct: 69  GSVVAWKDIEVFKVSH 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,442,735
Number of Sequences: 219361
Number of extensions: 1663969
Number of successful extensions: 3989
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 3894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3989
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)