ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3d21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
2ref|XM_475305.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK102760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5ref|NM_190764.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8dbj|AK069062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
9dbj|AK066622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
10dbj|AK062260.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
11gb|BT018463.1| Zea mays clone EL01N0417C03.d mRNA sequence 58 3e-05
12gb|AY105722.1| Zea mays PCO067271 mRNA sequence 58 3e-05
13gb|DQ428495.1| Sorghum propinquum locus PRC1123 genomic sequence 46 0.11
14gb|DQ428494.1| Sorghum bicolor voucher PI585454 locus PRC1123 ge... 46 0.11
15gb|DQ428493.1| Sorghum bicolor voucher PI267539b locus PRC1123 g... 46 0.11
16gb|DQ428492.1| Sorghum bicolor voucher PI267539a locus PRC1123 g... 46 0.11
17gb|DQ428491.1| Sorghum bicolor voucher PI267408 locus PRC1123 ge... 46 0.11
18gb|DQ428490.1| Sorghum bicolor voucher PI221607 locus PRC1123 ge... 46 0.11
19gb|DQ428489.1| Sorghum bicolor voucher PI152702 locus PRC1123 ge... 46 0.11
20gb|DQ428488.1| Sorghum bicolor voucher NSL92371 locus PRC1123 ge... 46 0.11
21gb|DQ428487.1| Sorghum bicolor voucher NSL87902 locus PRC1123 ge... 46 0.11
22gb|DQ428486.1| Sorghum bicolor voucher NSL87666 locus PRC1123 ge... 46 0.11
23gb|DQ428485.1| Sorghum bicolor voucher NSL77217 locus PRC1123 ge... 46 0.11
24gb|DQ428484.1| Sorghum bicolor voucher NSL77034 locus PRC1123 ge... 46 0.11
25gb|DQ428483.1| Sorghum bicolor voucher NSL56174 locus PRC1123 ge... 46 0.11
26gb|DQ428482.1| Sorghum bicolor voucher NSL56003 locus PRC1123 ge... 46 0.11
27gb|DQ428481.1| Sorghum bicolor voucher NSL55243 locus PRC1123 ge... 46 0.11
28gb|DQ428480.1| Sorghum bicolor voucher NSL51365 locus PRC1123 ge... 46 0.11
29gb|DQ428479.1| Sorghum bicolor voucher NSL51030 locus PRC1123 ge... 46 0.11
30gb|DQ428478.1| Sorghum bicolor voucher NSL50875 locus PRC1123 ge... 46 0.11
31gb|DQ428477.1| Sorghum bicolor voucher BTx623 locus PRC1123 geno... 46 0.11
32emb|AL606903.8| Mouse DNA sequence from clone RP23-278I3 on chro... 44 0.42
33gb|AY361956.1| Fagopyrum esculentum MT-like protein gene, partia... 42 1.6
34gb|AF022814.1|AF022814 Fugu rubripes transcription factor (SLP-1... 42 1.6
35gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, com... 42 1.6
36ref|XM_594731.2| PREDICTED: Bos taurus similar to axonemal dynei... 40 6.5
37gb|AY861243.1| Cottus gobio microsatellite CottE2 sequence 40 6.5
38emb|BX323561.7| Zebrafish DNA sequence from clone DKEYP-113G3, c... 40 6.5
39gb|AC108687.3| Homo sapiens 3 BAC RP11-725C17 (Roswell Park Canc... 40 6.5
40gb|AC005863.1|AC005863 Homo sapiens chromosome 17, clone hRPK.78... 40 6.5 
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05,
             complete sequence
          Length = 109126

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                         
Query: 155   ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
             ||||||| |||||||||||||||| || ||||| || |||   ||||| |||  | | ||
Sbjct: 57712 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 57771

                                                                         
Query: 215   atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
             ||| ||  | || || |||||||||||||| || |||||||||||||| | ||| |||||
Sbjct: 57772 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 57831

                                          
Query: 275   cgtcttgccgctcgcctcaaacagctttg 303
             | |||||||| || |||||||||||||||
Sbjct: 57832 cctcttgccgttcacctcaaacagctttg 57860
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>ref|XM_475305.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1170

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
            ||||||| |||||||||||||||| || ||||| || |||   ||||| |||  | | ||
Sbjct: 1170 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 1111

                                                                        
Query: 215  atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
            ||| ||  | || || |||||||||||||| || |||||||||||||| | ||| |||||
Sbjct: 1110 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 1051

                                         
Query: 275  cgtcttgccgctcgcctcaaacagctttg 303
            | |||||||| || |||||||||||||||
Sbjct: 1050 cctcttgccgttcacctcaaacagctttg 1022
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                            
Query: 155      ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
                ||||||| |||||||||||||||| || ||||| || |||   ||||| |||  | | ||
Sbjct: 21271106 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 21271165

                                                                            
Query: 215      atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
                ||| ||  | || || |||||||||||||| || |||||||||||||| | ||| |||||
Sbjct: 21271166 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 21271225

                                             
Query: 275      cgtcttgccgctcgcctcaaacagctttg 303
                | |||||||| || |||||||||||||||
Sbjct: 21271226 cctcttgccgttcacctcaaacagctttg 21271254
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>dbj|AK102760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107C19, full
            insert sequence
          Length = 1934

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
            ||||||| |||||||||||||||| || ||||| || |||   ||||| |||  | | ||
Sbjct: 1610 ctatatgctctgcatctgggagaatgagatcctgatcgtgttaccctccagcgaggtggc 1551

                                                                        
Query: 215  atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
            ||| ||  | || || |||||||||||||| || |||||||||||||| | ||| |||||
Sbjct: 1550 atgttttgatacaagggcttcggtcgcctcctcttcgctctcgaactggatgagcgcctg 1491

                                         
Query: 275  cgtcttgccgctcgcctcaaacagctttg 303
            | |||||||| || |||||||||||||||
Sbjct: 1490 cctcttgccgttcacctcaaacagctttg 1462
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>ref|NM_190764.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1995

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 93/110 (84%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                        
Query: 368  aagcgctgagatgtggatgatcttggtcggagcacaagcaatggcggtagttcttcgcca 427
            |||||||||||||||||| |||||||| || || ||| || ||||||||||||||| |||
Sbjct: 1782 aagcgctgagatgtggatcatcttggttggggcgcaa-cagtggcggtagttcttcacca 1724

                                                              
Query: 428  cattactgttgaaccggttaaggttggaggtttgagtagtcatgtgcatc 477
            |||| ||||| || | ||| ||||  || ||| ||||||||| |||||||
Sbjct: 1723 cattgctgttaaatctgttgaggtgagaagtt-gagtagtcacgtgcatc 1675



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
            |||||| ||||||||||| ||||| |||||||| ||| ||| ||  || |||||||| ||
Sbjct: 1995 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 1936

                                                                        
Query: 215  atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
             |||||    || || || || || ||||||||| |||| || ||| |||| || |||||
Sbjct: 1935 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 1876

                                                                 
Query: 275  cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 327
            ||| |||||| ||| ||| |||||  |||| ||| |||| || ||||||||||
Sbjct: 1875 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 1823
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 93/110 (84%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                            
Query: 368      aagcgctgagatgtggatgatcttggtcggagcacaagcaatggcggtagttcttcgcca 427
                |||||||||||||||||| |||||||| || || ||| || ||||||||||||||| |||
Sbjct: 37577597 aagcgctgagatgtggatcatcttggttggggcgcaa-cagtggcggtagttcttcacca 37577539

                                                                  
Query: 428      cattactgttgaaccggttaaggttggaggtttgagtagtcatgtgcatc 477
                |||| ||||| || | ||| ||||  || ||| ||||||||| |||||||
Sbjct: 37577538 cattgctgttaaatctgttgaggtgagaagtt-gagtagtcacgtgcatc 37577490



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                            
Query: 155      ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
                |||||| ||||||||||| ||||| |||||||| ||| ||| ||  || |||||||| ||
Sbjct: 37577810 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 37577751

                                                                            
Query: 215      atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
                 |||||    || || || || || ||||||||| |||| || ||| |||| || |||||
Sbjct: 37577750 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 37577691

                                                                     
Query: 275      cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 327
                ||| |||||| ||| ||| |||||  |||| ||| |||| || ||||||||||
Sbjct: 37577690 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 37577638
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>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0677H08
          Length = 178830

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 93/110 (84%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                         
Query: 368   aagcgctgagatgtggatgatcttggtcggagcacaagcaatggcggtagttcttcgcca 427
             |||||||||||||||||| |||||||| || || ||| || ||||||||||||||| |||
Sbjct: 38071 aagcgctgagatgtggatcatcttggttggggcgcaa-cagtggcggtagttcttcacca 38013

                                                               
Query: 428   cattactgttgaaccggttaaggttggaggtttgagtagtcatgtgcatc 477
             |||| ||||| || | ||| ||||  || ||| ||||||||| |||||||
Sbjct: 38012 cattgctgttaaatctgttgaggtgagaagtt-gagtagtcacgtgcatc 37964



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                         
Query: 155   ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
             |||||| ||||||||||| ||||| |||||||| ||| ||| ||  || |||||||| ||
Sbjct: 38284 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 38225

                                                                         
Query: 215   atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
              |||||    || || || || || ||||||||| |||| || ||| |||| || |||||
Sbjct: 38224 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 38165

                                                                  
Query: 275   cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 327
             ||| |||||| ||| ||| |||||  |||| ||| |||| || ||||||||||
Sbjct: 38164 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 38112
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>dbj|AK069062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006N01, full
            insert sequence
          Length = 1760

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 93/110 (84%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                        
Query: 368  aagcgctgagatgtggatgatcttggtcggagcacaagcaatggcggtagttcttcgcca 427
            |||||||||||||||||| |||||||| || || ||| || ||||||||||||||| |||
Sbjct: 1262 aagcgctgagatgtggatcatcttggttggggcgcaa-cagtggcggtagttcttcacca 1204

                                                              
Query: 428  cattactgttgaaccggttaaggttggaggtttgagtagtcatgtgcatc 477
            |||| ||||| || | ||| ||||  || ||| ||||||||| |||||||
Sbjct: 1203 cattgctgttaaatctgttgaggtgagaagtt-gagtagtcacgtgcatc 1155



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
            |||||| ||||||||||| ||||| |||||||| ||| ||| ||  || |||||||| ||
Sbjct: 1475 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 1416

                                                                        
Query: 215  atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
             |||||    || || || || || ||||||||| |||| || ||| |||| || |||||
Sbjct: 1415 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 1356

                                                                 
Query: 275  cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 327
            ||| |||||| ||| ||| |||||  |||| ||| |||| || ||||||||||
Sbjct: 1355 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 1303
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>dbj|AK066622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070J15, full
            insert sequence
          Length = 1641

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 93/110 (84%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                        
Query: 368  aagcgctgagatgtggatgatcttggtcggagcacaagcaatggcggtagttcttcgcca 427
            |||||||||||||||||| |||||||| || || ||| || ||||||||||||||| |||
Sbjct: 1143 aagcgctgagatgtggatcatcttggttggggcgcaa-cagtggcggtagttcttcacca 1085

                                                              
Query: 428  cattactgttgaaccggttaaggttggaggtttgagtagtcatgtgcatc 477
            |||| ||||| || | ||| ||||  || ||| ||||||||| |||||||
Sbjct: 1084 cattgctgttaaatctgttgaggtgagaagtt-gagtagtcacgtgcatc 1036



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
            |||||| ||||||||||| ||||| |||||||| ||| ||| ||  || |||||||| ||
Sbjct: 1356 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 1297

                                                                        
Query: 215  atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
             |||||    || || || || || ||||||||| |||| || ||| |||| || |||||
Sbjct: 1296 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 1237

                                                                 
Query: 275  cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 327
            ||| |||||| ||| ||| |||||  |||| ||| |||| || ||||||||||
Sbjct: 1236 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 1184
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>dbj|AK062260.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G12, full
           insert sequence
          Length = 1088

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                       
Query: 368 aagcgctgagatgtggatgatcttggtcggagcacaagcaatggcggtagttcttcgcca 427
           |||||||||||||||||| |||||||| || || ||| || ||||||||||||||| |||
Sbjct: 720 aagcgctgagatgtggatcatcttggttggggcgcaa-cagtggcggtagttcttcacca 662

                    
Query: 428 cattactgt 436
           |||| ||||
Sbjct: 661 cattgctgt 653



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 137/173 (79%)
 Strand = Plus / Minus

                                                                       
Query: 155 ctatatgttctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgc 214
           |||||| ||||||||||| ||||| |||||||| ||| ||| ||  || |||||||| ||
Sbjct: 933 ctatatattctgcatctgtgagaaggaaatcctgatgttggttcggtccagcttgcttgc 874

                                                                       
Query: 215 atgcttacagaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctg 274
            |||||    || || || || || ||||||||| |||| || ||| |||| || |||||
Sbjct: 873 gtgcttctccacgagcgcctctgttgcctcttccacgctttcaaacagcacaagggcctg 814

                                                                
Query: 275 cgtcttgccgctcgcctcaaacagctttgacttgacgatggtgccatgctcac 327
           ||| |||||| ||| ||| |||||  |||| ||| |||| || ||||||||||
Sbjct: 813 cgttttgccgttcgtctcgaacagtcttgagttggcgatagtcccatgctcac 761
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>gb|BT018463.1| Zea mays clone EL01N0417C03.d mRNA sequence
          Length = 1476

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 98/121 (80%)
 Strand = Plus / Minus

                                                                        
Query: 163  tctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgcatgcttac 222
            ||||||||||||||||||| ||||  || |||   ||||||||| |||| ||||||||  
Sbjct: 1219 tctgcatctgggagaaagagatccggatcgtgttaccctcgagcgtgctggcatgctttg 1160

                                                                        
Query: 223  agaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctgcgtcttgc 282
            | || || || ||||| ||||| || ||||||||||||   | |||||||||| ||||||
Sbjct: 1159 acacgagggcctcggtagcctcctcttcgctctcgaacaaaatgagagcctgcctcttgc 1100

             
Query: 283  c 283
            |
Sbjct: 1099 c 1099



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 979 agcaatgtcggtagttcttgaccacgttgctgttgaaccggtt 937
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>gb|AY105722.1| Zea mays PCO067271 mRNA sequence
          Length = 1012

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 98/121 (80%)
 Strand = Plus / Minus

                                                                       
Query: 163 tctgcatctgggagaaagaaatcctaatggtggatccctcgagcttgctcgcatgcttac 222
           ||||||||||||||||||| ||||  || |||   ||||||||| |||| ||||||||  
Sbjct: 709 tctgcatctgggagaaagagatccggatcgtgttaccctcgagcgtgctggcatgctttg 650

                                                                       
Query: 223 agaccagagcttcggtcgcctcttcctcgctctcgaactgcacgagagcctgcgtcttgc 282
           | || || || ||||| ||||| || ||||||||||||   | |||||||||| ||||||
Sbjct: 649 acacgagggcctcggtagcctcctcttcgctctcgaacaaaatgagagcctgcctcttgc 590

            
Query: 283 c 283
           |
Sbjct: 589 c 589



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 468 agcaatgtcggtagttcttgaccacgttgctgttgaaccggtt 426
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>gb|DQ428495.1| Sorghum propinquum locus PRC1123 genomic sequence
          Length = 715

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 565 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 523
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>gb|DQ428494.1| Sorghum bicolor voucher PI585454 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428493.1| Sorghum bicolor voucher PI267539b locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428492.1| Sorghum bicolor voucher PI267539a locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428491.1| Sorghum bicolor voucher PI267408 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428490.1| Sorghum bicolor voucher PI221607 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428489.1| Sorghum bicolor voucher PI152702 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428488.1| Sorghum bicolor voucher NSL92371 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428487.1| Sorghum bicolor voucher NSL87902 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428486.1| Sorghum bicolor voucher NSL87666 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428485.1| Sorghum bicolor voucher NSL77217 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428484.1| Sorghum bicolor voucher NSL77034 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428483.1| Sorghum bicolor voucher NSL56174 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428482.1| Sorghum bicolor voucher NSL56003 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttaaccacgttgctgttgaaccggtt 521
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>gb|DQ428481.1| Sorghum bicolor voucher NSL55243 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428480.1| Sorghum bicolor voucher NSL51365 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428479.1| Sorghum bicolor voucher NSL51030 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428478.1| Sorghum bicolor voucher NSL50875 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>gb|DQ428477.1| Sorghum bicolor voucher BTx623 locus PRC1123 genomic sequence
          Length = 713

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 404 agcaatggcggtagttcttcgccacattactgttgaaccggtt 446
           ||||||| |||||||||||  |||| || ||||||||||||||
Sbjct: 563 agcaatgacggtagttcttgaccacgttgctgttgaaccggtt 521
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>emb|AL606903.8| Mouse DNA sequence from clone RP23-278I3 on chromosome 4, complete
             sequence
          Length = 175238

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 17    ctggcatcattttacaaccatc 38
             ||||||||||||||||||||||
Sbjct: 51751 ctggcatcattttacaaccatc 51730
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>gb|AY361956.1| Fagopyrum esculentum MT-like protein gene, partial cds
          Length = 979

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 103 tggaaagtttagaaagaaaga 123
           |||||||||||||||||||||
Sbjct: 717 tggaaagtttagaaagaaaga 697
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>gb|AF022814.1|AF022814 Fugu rubripes transcription factor (SLP-1) and heme-oxygenase genes,
             complete cds
          Length = 37400

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   tcgcctcttcctcgctctcga 258
             |||||||||||||||||||||
Sbjct: 20030 tcgcctcttcctcgctctcga 20010
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>gb|AC158748.9| Mus musculus chromosome 7, clone RP23-239H14, complete sequence
          Length = 167144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    tctgcatctgggagaaagaaa 183
              |||||||||||||||||||||
Sbjct: 120723 tctgcatctgggagaaagaaa 120703
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>ref|XM_594731.2| PREDICTED: Bos taurus similar to axonemal dynein heavy chain 7
            (LOC516576), mRNA
          Length = 7305

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  ggagaaagaaatcctaatgg 192
            ||||||||||||||||||||
Sbjct: 2688 ggagaaagaaatcctaatgg 2707



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  ggagaaagaaatcctaatgg 192
            ||||||||||||||||||||
Sbjct: 1599 ggagaaagaaatcctaatgg 1618
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>gb|AY861243.1| Cottus gobio microsatellite CottE2 sequence
          Length = 613

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 232 cttcggtcgcctcttcctcg 251
           ||||||||||||||||||||
Sbjct: 558 cttcggtcgcctcttcctcg 539
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>emb|BX323561.7| Zebrafish DNA sequence from clone DKEYP-113G3, complete sequence
          Length = 167995

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    gaaagtttagaaagaaagag 124
              ||||||||||||||||||||
Sbjct: 135033 gaaagtttagaaagaaagag 135014
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>gb|AC108687.3| Homo sapiens 3 BAC RP11-725C17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128821

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 21     catcattttacaaccatcacagaa 44
              ||||||||| ||||||||||||||
Sbjct: 109594 catcattttgcaaccatcacagaa 109617
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>gb|AC005863.1|AC005863 Homo sapiens chromosome 17, clone hRPK.786_O_4, complete sequence
          Length = 172203

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    ggaaagtttagaaagaaaga 123
              ||||||||||||||||||||
Sbjct: 146677 ggaaagtttagaaagaaaga 146658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,165,501
Number of Sequences: 3902068
Number of extensions: 5165501
Number of successful extensions: 93153
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93032
Number of HSP's gapped (non-prelim): 113
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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