ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3d20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106157.1| Zea mays PCO066687 mRNA sequence 137 5e-29
2dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
3dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
4gb|AY104332.1| Zea mays PCO109929 mRNA sequence 88 4e-14
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 6e-04
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
7gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare str... 54 6e-04
8gb|AY109043.1| Zea mays PCO147658 mRNA sequence 52 0.002
9gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete s... 44 0.54
10gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, com... 42 2.1
11gb|AC167707.2| Reniera sp. JGI-2005 clone JGIBAYC-9L12, complete... 42 2.1
12gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, compl... 42 2.1
13gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosom... 42 2.1
14emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chr... 42 2.1
15gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Ca... 42 2.1
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
18dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
19dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
20gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, co... 40 8.5
21gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 40 8.5
22gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome... 40 8.5
23gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, com... 40 8.5
24gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 m... 40 8.5
25gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosom... 40 8.5
26gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosom... 40 8.5
27gb|AC100154.9| Mus musculus chromosome 7, clone RP23-43N5, compl... 40 8.5
28gb|AC162878.2| Mus musculus chromosome 7, clone RP24-316O13, com... 40 8.5
29emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in ... 40 8.5
30dbj|AK030732.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 8.5
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
33dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
34dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
35dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
36dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
37emb|BX537270.4| Zebrafish DNA sequence from clone DKEY-278E24 in... 40 8.5
38emb|BX510652.6| Zebrafish DNA sequence from clone CH211-107N23 i... 40 8.5
39gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, co... 40 8.5
40emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in ... 40 8.5
41gb|AC102572.17| Mus musculus chromosome 18, clone RP23-234A9, co... 40 8.5
42gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complet... 40 8.5
43dbj|AB066524.1| Macaca fascicularis brain cDNA clone:QmoA-11085,... 40 8.5 
>gb|AY106157.1| Zea mays PCO066687 mRNA sequence
          Length = 989

 Score =  137 bits (69), Expect = 5e-29
 Identities = 162/193 (83%)
 Strand = Plus / Minus

                                                                       
Query: 397 agatcggctttccgcttctgcagctcttgcttccaccctggctgcaggtagaacacgtcc 456
           ||||| ||||| |||||||| || |||||||||||   ||||||  |||||||  | |||
Sbjct: 582 agatctgcttttcgcttctgtagttcttgcttccaatttggctgtcggtagaatgcatcc 523

                                                                       
Query: 457 ttggtgacgccgaagacagtctggaactcgctctccgataagtacgcctctctgcgtttg 516
           ||||| | ||| || ||||| ||||| || || || |||||||| |||||||||||||||
Sbjct: 522 ttggtcatgccaaaaacagtttggaattcactatctgataagtatgcctctctgcgtttg 463

                                                                       
Query: 517 tagtctatcccacggataggatcagtagatttagatatcaagcggtcgtagctaaatgtt 576
           || ||||||||||| |  ||||| || ||||| |||||||||||||| ||||||||||| 
Sbjct: 462 taatctatcccacgaactggatcggtggatttggatatcaagcggtcatagctaaatgtc 403

                        
Query: 577 gcttcaccaacat 589
           |||||||||||||
Sbjct: 402 gcttcaccaacat 390
to top
>dbj|AK121389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128M19, full
            insert sequence
          Length = 3343

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                        
Query: 412  ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 471
            ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 3053 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 2994

                                                                        
Query: 472  acagtctggaactcgctctccgataagtacgcctctctgcgtttgtagtctatcccacgg 531
            ||||||||||| ||||| ||||| || || | ||||||||||||||| ||||||||||| 
Sbjct: 2993 acagtctggaattcgctgtccgacaaatatgtctctctgcgtttgtaatctatcccacga 2934

                                     
Query: 532  ataggatcagtagatttagatatca 556
            | ||| |  |||||||| |||||||
Sbjct: 2933 acagggttggtagattttgatatca 2909
to top
>dbj|AK103910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150O18, full
            insert sequence
          Length = 1711

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                        
Query: 412  ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 471
            ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 1253 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 1194

                                                                        
Query: 472  acagtctggaactcgctctccgataagtacgcctctctgcgtttgtagtctatcccacgg 531
            ||||||||||| ||||| ||||| || || | ||||||||||||||| ||||||||||| 
Sbjct: 1193 acagtctggaattcgctgtccgacaaatatgtctctctgcgtttgtaatctatcccacga 1134

                                     
Query: 532  ataggatcagtagatttagatatca 556
            | ||| |  |||||||| |||||||
Sbjct: 1133 acagggttggtagattttgatatca 1109
to top
>gb|AY104332.1| Zea mays PCO109929 mRNA sequence
          Length = 989

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 143/176 (81%)
 Strand = Plus / Minus

                                                                       
Query: 397 agatcggctttccgcttctgcagctcttgcttccaccctggctgcaggtagaacacgtcc 456
           ||||| ||||||  |||||||| |||||||||||||| |||||||  ||||||| | || 
Sbjct: 813 agatcagctttcttcttctgcaactcttgcttccaccttggctgctcgtagaactcctct 754

                                                                       
Query: 457 ttggtgacgccgaagacagtctggaactcgctctccgataagtacgcctctctgcgtttg 516
           ||||| | ||| || || |||| ||||||  | |||   || || | ||||||||| |||
Sbjct: 753 ttggtcatgccaaacacggtctcgaactcattgtccaccaaatatgtctctctgcgcttg 694

                                                                   
Query: 517 tagtctatcccacggataggatcagtagatttagatatcaagcggtcgtagctaaa 572
           | ||||||||||| || ||| |||||||| || |||| ||||||||||||||||||
Sbjct: 693 tggtctatcccactgacagggtcagtagactttgataccaagcggtcgtagctaaa 638
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 412      ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 471
                ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 13626441 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 13626382

                                       
Query: 472      acagtctggaactcgctctccga 494
                ||||||||||| ||||| |||||
Sbjct: 13626381 acagtctggaattcgctgtccga 13626359



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 503      cctctctgcgtttgtagtctatcccacggataggatcagtagatttagatatca 556
                |||||||||||||||| ||||||||||| | ||| |  |||||||| |||||||
Sbjct: 13625506 cctctctgcgtttgtaatctatcccacgaacagggttggtagattttgatatca 13625453
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                            
Query: 412      ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 471
                ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 13621416 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 13621357

                                       
Query: 472      acagtctggaactcgctctccga 494
                ||||||||||| ||||| |||||
Sbjct: 13621356 acagtctggaattcgctgtccga 13621334



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 503      cctctctgcgtttgtagtctatcccacggataggatcagtagatttagatatca 556
                |||||||||||||||| ||||||||||| | ||| |  |||||||| |||||||
Sbjct: 13620481 cctctctgcgtttgtaatctatcccacgaacagggttggtagattttgatatca 13620428
to top
>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0033D20, from chromosome 3, complete sequence
          Length = 128707

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 412   ttctgcagctcttgcttccaccctggctgcaggtagaacacgtccttggtgacgccgaag 471
             ||||| || ||||| ||||||||||||||| |||||||| | ||||| || |  || || 
Sbjct: 17113 ttctgtagttcttgtttccaccctggctgctggtagaactcttccttcgttataccaaat 17054

                                    
Query: 472   acagtctggaactcgctctccga 494
             ||||||||||| ||||| |||||
Sbjct: 17053 acagtctggaattcgctgtccga 17031



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 503   cctctctgcgtttgtagtctatcccacggataggatcagtagatttagatatca 556
             |||||||||||||||| ||||||||||| | ||| |  |||||||| |||||||
Sbjct: 16178 cctctctgcgtttgtaatctatcccacgaacagggttggtagattttgatatca 16125
to top
>gb|AY109043.1| Zea mays PCO147658 mRNA sequence
          Length = 822

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 397 agatcggctttccgcttctgcagctcttgcttccaccctggctgcaggtagaac 450
           ||||||||||||   ||||||| |||||||||||||| |||||||  |||||||
Sbjct: 362 agatcggctttctttttctgcaactcttgcttccaccttggctgctcgtagaac 309
to top
>gb|AC126783.33| Medicago truncatula clone mth2-15k17, complete sequence
          Length = 117437

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 181   gcaagcagcacagcacagcaca 202
             ||||||||||||||||||||||
Sbjct: 27034 gcaagcagcacagcacagcaca 27055
to top
>gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, complete sequence
          Length = 193777

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    aggaccttgcaagcagcacag 193
              |||||||||||||||||||||
Sbjct: 184822 aggaccttgcaagcagcacag 184802
to top
>gb|AC167707.2| Reniera sp. JGI-2005 clone JGIBAYC-9L12, complete sequence
          Length = 40570

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 244   caaaaccaaccaaaagccaca 264
             |||||||||||||||||||||
Sbjct: 12679 caaaaccaaccaaaagccaca 12659
to top
>gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, complete sequence
          Length = 228851

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 173    aggaccttgcaagcagcacag 193
              |||||||||||||||||||||
Sbjct: 108739 aggaccttgcaagcagcacag 108759
to top
>gb|AC127551.7| Mus musculus BAC clone RP24-547H23 from chromosome 8, complete sequence
          Length = 204342

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 173    aggaccttgcaagcagcacag 193
              |||||||||||||||||||||
Sbjct: 202779 aggaccttgcaagcagcacag 202799
to top
>emb|AL157882.5| Human DNA sequence from clone RP11-202I11 on chromosome 9q21.32-22.2
             Contains the 5' end of the AGTPBP1 gene for  ATP/GTP
             binding protein 1 (NNA1, KIAA1035), a novel gene, the 5'
             end of a pseudogene similar to part of a novel protein
             (DKFZp434D0917) and a CpG island, complete sequence
          Length = 172903

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 326   gtaaaaacaagcacatatgattgat 350
             ||||||||||| |||||||||||||
Sbjct: 63249 gtaaaaacaagtacatatgattgat 63273
to top
>gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166083

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 330    aaacaagcacatatgattgat 350
              |||||||||||||||||||||
Sbjct: 146682 aaacaagcacatatgattgat 146662
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 183      aagcagcacagcacagcacac 203
                |||||||||||||||||||||
Sbjct: 20452453 aagcagcacagcacagcacac 20452473



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 183      aagcagcacagcacagcaca 202
                ||||||||||||||||||||
Sbjct: 21854019 aagcagcacagcacagcaca 21854038
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 340      atatgattgattgatctcattctgc 364
                ||||||||||||||||| |||||||
Sbjct: 28255741 atatgattgattgatctgattctgc 28255717
to top
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0623A10
          Length = 156517

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 340   atatgattgattgatctcattctgc 364
             ||||||||||||||||| |||||||
Sbjct: 53770 atatgattgattgatctgattctgc 53746
to top
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0456B03
          Length = 152973

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   aagcagcacagcacagcacac 203
             |||||||||||||||||||||
Sbjct: 83083 aagcagcacagcacagcacac 83103
to top
>gb|AC166746.7| Mus musculus chromosome 19, clone RP24-248H10, complete sequence
          Length = 156084

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   agcagcacagcacagcacac 203
             ||||||||||||||||||||
Sbjct: 32602 agcagcacagcacagcacac 32583
to top
>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 426    cttccaccctggctgcaggt 445
              ||||||||||||||||||||
Sbjct: 213231 cttccaccctggctgcaggt 213212
to top
>gb|AC144768.2| Mus musculus BAC clone RP23-24K24 from chromosome 7, complete sequence
          Length = 230675

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    aagcagcacagcacagcaca 202
              ||||||||||||||||||||
Sbjct: 185816 aagcagcacagcacagcaca 185835
to top
>gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, complete sequence
          Length = 213163

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    gagaaaaaccatacacatat 142
              ||||||||||||||||||||
Sbjct: 195026 gagaaaaaccatacacatat 195045
to top
>gb|AC087801.69| Mus musculus strain C57BL/6J clone rp23-396i23 map 1, complete sequence
          Length = 197679

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     ccttccaaaacatacccagg 88
              ||||||||||||||||||||
Sbjct: 172430 ccttccaaaacatacccagg 172411
to top
>gb|AC125484.4| Mus musculus BAC clone RP23-127L14 from chromosome 13, complete sequence
          Length = 207318

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    cttccaccctggctgcaggt 445
              ||||||||||||||||||||
Sbjct: 194517 cttccaccctggctgcaggt 194536
to top
>gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosome 7, complete sequence
          Length = 139125

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   aagcagcacagcacagcaca 202
             ||||||||||||||||||||
Sbjct: 91892 aagcagcacagcacagcaca 91873
to top
>gb|AC100154.9| Mus musculus chromosome 7, clone RP23-43N5, complete sequence
          Length = 181412

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 585  aacatgttcagttgtttgtt 604
            ||||||||||||||||||||
Sbjct: 2545 aacatgttcagttgtttgtt 2564
to top
>gb|AC162878.2| Mus musculus chromosome 7, clone RP24-316O13, complete sequence
          Length = 198612

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 585   aacatgttcagttgtttgtt 604
             ||||||||||||||||||||
Sbjct: 40289 aacatgttcagttgtttgtt 40308
to top
>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17,
              complete sequence
          Length = 185139

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    tgatgagaggggtaaaaaca 334
              ||||||||||||||||||||
Sbjct: 117439 tgatgagaggggtaaaaaca 117420
to top
>dbj|AK030732.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730424L04 product:hypothetical
           Ubiquitin carboxyl-terminal hydrolase family 2
           containing protein, full insert sequence
          Length = 2337

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  ccttccaaaacatacccagg 88
           ||||||||||||||||||||
Sbjct: 213 ccttccaaaacatacccagg 194
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 186      cagcacagcacagcacactc 205
                ||||||||||||||||||||
Sbjct: 29562271 cagcacagcacagcacactc 29562252
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     agcagcacagcacagcacac 203
               ||||||||||||||||||||
Sbjct: 5079827 agcagcacagcacagcacac 5079808
to top
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   agcagcacagcacagcacac 203
             ||||||||||||||||||||
Sbjct: 40325 agcagcacagcacagcacac 40306
to top
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0627E10
          Length = 163388

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   cagcacagcacagcacactc 205
             ||||||||||||||||||||
Sbjct: 88943 cagcacagcacagcacactc 88924
to top
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0429B05
          Length = 155024

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    aagcagcacagcacagcaca 202
              ||||||||||||||||||||
Sbjct: 133602 aagcagcacagcacagcaca 133621
to top
>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0409A07
          Length = 146663

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   aagcagcacagcacagcaca 202
             ||||||||||||||||||||
Sbjct: 54688 aagcagcacagcacagcaca 54707
to top
>emb|BX537270.4| Zebrafish DNA sequence from clone DKEY-278E24 in linkage group 4,
              complete sequence
          Length = 175518

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     acatataggtttacatataa 31
              ||||||||||||||||||||
Sbjct: 156028 acatataggtttacatataa 156047
to top
>emb|BX510652.6| Zebrafish DNA sequence from clone CH211-107N23 in linkage group 4,
              complete sequence
          Length = 165746

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     acatataggtttacatataa 31
              ||||||||||||||||||||
Sbjct: 100123 acatataggtttacatataa 100142
to top
>gb|AC110576.12| Mus musculus chromosome 8, clone RP23-329K17, complete sequence
          Length = 224141

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    acaaacgaaagaatgaccta 234
              ||||||||||||||||||||
Sbjct: 113991 acaaacgaaagaatgaccta 113972
to top
>emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in linkage group 22,
             complete sequence
          Length = 123466

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   agcagcacagcacagcacac 203
             ||||||||||||||||||||
Sbjct: 90010 agcagcacagcacagcacac 90029
to top
>gb|AC102572.17| Mus musculus chromosome 18, clone RP23-234A9, complete sequence
          Length = 204140

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   gcttctgcagctcttgcttc 429
             ||||||||||||||||||||
Sbjct: 70846 gcttctgcagctcttgcttc 70827
to top
>gb|AC151001.2| Mus musculus BAC clone RP23-45M16 from 7, complete sequence
          Length = 176698

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   aagcagcacagcacagcaca 202
             ||||||||||||||||||||
Sbjct: 51600 aagcagcacagcacagcaca 51581
to top
>dbj|AB066524.1| Macaca fascicularis brain cDNA clone:QmoA-11085, full insert
           sequence
          Length = 1776

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 aaccgagaaaaaccatacac 138
           ||||||||||||||||||||
Sbjct: 129 aaccgagaaaaaccatacac 110


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,924,152
Number of Sequences: 3902068
Number of extensions: 4924152
Number of successful extensions: 106840
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106557
Number of HSP's gapped (non-prelim): 283
length of query: 621
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 598
effective length of database: 17,143,297,704
effective search space: 10251692026992
effective search space used: 10251692026992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top