ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3d14 |
|---|---|
| Clone Library Name | barley_pub |
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 197 bits (500), Expect = 3e-50 Identities = 96/126 (76%), Positives = 110/126 (87%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 TMST+E+AEKAVEM++RYDVNGRLLTVNKAA RG R ERPPR S+RIYVGN+PW +D Sbjct: 183 TMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGID 242 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALR 241 D+RL +LFSEHGKVV ARVVYDR+TGRSRGFGFVTMAS+ E+ DAIA LDGQS GR +R Sbjct: 243 DARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIR 302 Query: 240 VNVAEE 223 VNVAE+ Sbjct: 303 VNVAED 308 Score = 76.3 bits (186), Expect = 6e-14 Identities = 39/87 (44%), Positives = 54/87 (62%) Frame = -2 Query: 489 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 310 + PP D+ +++VGNLP+ VD L LF + G V A V+Y+RDT +SRGFGFVTM+ Sbjct: 130 QEPPEDA----KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMS 185 Query: 309 SQEELDDAIAALDGQSXXGRALRVNVA 229 + EE + A+ + GR L VN A Sbjct: 186 TVEEAEKAVEMYNRYDVNGRLLTVNKA 212
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 189 bits (479), Expect = 7e-48 Identities = 91/126 (72%), Positives = 111/126 (88%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 TMS++++AE AVE F+RYD+NGRLLTVNKAAPRG+R ER PR +FR+YVGNLPW VD Sbjct: 197 TMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVD 256 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALR 241 + RL +LFSEHGKVV+ARVVYDR+TGRSRGFGFVTM+ +EL++AI+ALDGQ+ GRA+R Sbjct: 257 NGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316 Query: 240 VNVAEE 223 VNVAEE Sbjct: 317 VNVAEE 322 Score = 67.0 bits (162), Expect = 4e-11 Identities = 33/76 (43%), Positives = 48/76 (63%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VGNL + V+ L LF + G V A V+Y+R+T +SRGFGFVTM+S +E + A+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 276 LDGQSXXGRALRVNVA 229 + GR L VN A Sbjct: 211 FNRYDLNGRLLTVNKA 226
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 183 bits (464), Expect = 4e-46 Identities = 85/126 (67%), Positives = 109/126 (86%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 TMST+E+A+KAVE++ +YD+NGRLLTVNKAAPRG+R ER PR ++RIYVGN+PW +D Sbjct: 144 TMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDID 203 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALR 241 D+RL ++FSEHGKVV ARVV+DR++GRSRGFGFVTM+S+ E+ +AIA LDGQ+ GR +R Sbjct: 204 DARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 263 Query: 240 VNVAEE 223 VN AEE Sbjct: 264 VNAAEE 269 Score = 74.7 bits (182), Expect = 2e-13 Identities = 36/76 (47%), Positives = 49/76 (64%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VGNLP+ +D L +LF + G V A V+Y+R+T RSRGFGFVTM++ EE D A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 276 LDGQSXXGRALRVNVA 229 GR L VN A Sbjct: 158 YSQYDLNGRLLTVNKA 173
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 177 bits (449), Expect = 2e-44 Identities = 89/126 (70%), Positives = 105/126 (83%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 TMST+E+AEKAVE+ + YD++GR LTVNKAAPRG+ P D S R+YVGNLPW VD Sbjct: 102 TMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVD 161 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALR 241 SRL +LFSEHGKVV ARVV DR+TGRSRGFGFVTM+S+ E++DAIAALDGQ+ GRA+R Sbjct: 162 TSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVR 221 Query: 240 VNVAEE 223 VNVAEE Sbjct: 222 VNVAEE 227 Score = 78.6 bits (192), Expect = 1e-14 Identities = 40/91 (43%), Positives = 56/91 (61%) Frame = -2 Query: 501 GARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 322 G PP ++ +++VGNLP+ VD +L +F G V A V+Y+R+T RSRGFGF Sbjct: 45 GQGFSEPPEEA----KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGF 100 Query: 321 VTMASQEELDDAIAALDGQSXXGRALRVNVA 229 VTM++ EE + A+ L+G GR L VN A Sbjct: 101 VTMSTVEEAEKAVELLNGYDMDGRQLTVNKA 131
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 125 bits (314), Expect = 9e-29 Identities = 69/132 (52%), Positives = 86/132 (65%), Gaps = 7/132 (5%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSG-------SSFRIYVG 442 TMS+ E+ E A + F+ Y+++GR L VN P R R SS R+YVG Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVG 193 Query: 441 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 262 NL W VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++AI +LDG Sbjct: 194 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVD 253 Query: 261 XXGRALRVNVAE 226 GRA+RV+ AE Sbjct: 254 LNGRAIRVSPAE 265 Score = 83.6 bits (205), Expect = 4e-16 Identities = 41/81 (50%), Positives = 53/81 (65%) Frame = -2 Query: 477 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 298 R+ +I+VGNLP+ D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 297 LDDAIAALDGQSXXGRALRVN 235 ++ A +G GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 124 bits (312), Expect = 2e-28 Identities = 69/138 (50%), Positives = 88/138 (63%), Gaps = 13/138 (9%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS-------------S 460 TMS+ E+ E A + F+ Y+++GR L VN P R R++ S S Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSS 193 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 R+YVGNL W VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++AI Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253 Query: 279 ALDGQSXXGRALRVNVAE 226 +LDG GRA+RV+ AE Sbjct: 254 SLDGVDLNGRAIRVSPAE 271 Score = 79.7 bits (195), Expect = 6e-15 Identities = 40/81 (49%), Positives = 52/81 (64%) Frame = -2 Query: 477 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 298 R+ +I+VGNL + D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 297 LDDAIAALDGQSXXGRALRVN 235 ++ A +G GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 124 bits (311), Expect = 2e-28 Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 27/153 (17%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--------------RDSGS 463 TMST E+ E A + F+ Y+++GR + VN A P A+ E RD S Sbjct: 134 TMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNS 192 Query: 462 SF-------------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 322 SF R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRGFGF Sbjct: 193 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGF 252 Query: 321 VTMASQEELDDAIAALDGQSXXGRALRVNVAEE 223 VT +S +E++DAI +L+G GR++RV+ AEE Sbjct: 253 VTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285 Score = 79.0 bits (193), Expect = 1e-14 Identities = 41/86 (47%), Positives = 55/86 (63%) Frame = -2 Query: 492 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 V PR S +++VGNLP+ VD + L LF G V V+YD+ TGRSRGFGFVTM Sbjct: 77 VAEQPRFS-EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTM 135 Query: 312 ASQEELDDAIAALDGQSXXGRALRVN 235 +++EE++ A +G GRA+RVN Sbjct: 136 STKEEVEAAEQQFNGYEIDGRAIRVN 161
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 123 bits (309), Expect = 4e-28 Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 27/153 (17%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--------------RDSGS 463 TMST E+ E A + F+ Y+++GR + VN A P A+ E RD S Sbjct: 135 TMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNS 193 Query: 462 SF-------------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 322 SF R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRGFGF Sbjct: 194 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGF 253 Query: 321 VTMASQEELDDAIAALDGQSXXGRALRVNVAEE 223 VT +S +E++DAI +L+G GR++RV+ AEE Sbjct: 254 VTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286 Score = 77.4 bits (189), Expect = 3e-14 Identities = 40/86 (46%), Positives = 55/86 (63%) Frame = -2 Query: 492 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 V PR S +++VGNLP+ VD + L LF G V V+YD+ +GRSRGFGFVTM Sbjct: 78 VAEQPRFS-EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTM 136 Query: 312 ASQEELDDAIAALDGQSXXGRALRVN 235 +++EE++ A +G GRA+RVN Sbjct: 137 STKEEVEAAEQQFNGYEIDGRAIRVN 162
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 122 bits (306), Expect = 8e-28 Identities = 68/144 (47%), Positives = 88/144 (61%), Gaps = 19/144 (13%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVE---RPPRDS------------- 469 TMS++ + E A + F+ Y+++GR L VN P R + R PR S Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGG 197 Query: 468 ---GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 298 GS R+YVGNL W VDD L LFSE GKVV+ARV+YDRD+GRS+GFGFVT S +E Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257 Query: 297 LDDAIAALDGQSXXGRALRVNVAE 226 + +AI +LDG GR +RV+ AE Sbjct: 258 VQNAIKSLDGADLDGRQIRVSEAE 281 Score = 80.9 bits (198), Expect = 3e-15 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 2/85 (2%) Frame = -2 Query: 483 PPRDSGSS--FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 310 PP++ S +++VGNLP+ VD ++L +LF G V V+YD+ TGRSRGFGFVTM+ Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140 Query: 309 SQEELDDAIAALDGQSXXGRALRVN 235 S E++ A +G GR LRVN Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVN 165
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 102 bits (255), Expect = 6e-22 Identities = 49/82 (59%), Positives = 63/82 (76%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 SGS R+YVGNL W VDD L LF+E GKVV+ARV+YDRD+GRS+GFGFVT++S +E+ Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312 Query: 291 DAIAALDGQSXXGRALRVNVAE 226 AI +L+G GR +RV+ AE Sbjct: 313 KAINSLNGADLDGRQIRVSEAE 334 Score = 73.9 bits (180), Expect = 3e-13 Identities = 35/74 (47%), Positives = 49/74 (66%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VGNL + VD ++L +LF G V V+YD+ TGRSRGFGFVTM++ E++ A Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 276 LDGQSXXGRALRVN 235 +G GR LRVN Sbjct: 160 FNGYEFEGRPLRVN 173
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 88.6 bits (218), Expect = 1e-17 Identities = 49/124 (39%), Positives = 66/124 (53%) Frame = -2 Query: 597 MSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDD 418 +ST VE+ D L+ + + ER +S R+YVGNLP+ + Sbjct: 68 LSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTS 127 Query: 417 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 S+L E+F+E G V + +VYDR T RSRGF FVTM S EE +AI DG GR ++V Sbjct: 128 SQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKV 187 Query: 237 NVAE 226 N E Sbjct: 188 NFPE 191 Score = 86.3 bits (212), Expect = 6e-17 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 9/133 (6%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVN-KAAPRGARVERPPRDSGSSF--------RIY 448 TM ++E+A++A+ +F V GR + VN PRG E S++ ++Y Sbjct: 161 TMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLY 220 Query: 447 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 268 V NL W + L + F++ + A+V+YDR +GRSRGFGF+T +S E ++ A+ ++ Sbjct: 221 VANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNE 280 Query: 267 QSXXGRALRVNVA 229 GR LR+NVA Sbjct: 281 VELEGRPLRLNVA 293
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 84.7 bits (208), Expect = 2e-16 Identities = 36/78 (46%), Positives = 55/78 (70%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W DD L FS++G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 279 ALDGQSXXGRALRVNVAE 226 ++GQ GR++ VN A+ Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 83.2 bits (204), Expect = 5e-16 Identities = 35/78 (44%), Positives = 54/78 (69%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W DD L F+++G V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67 Query: 279 ALDGQSXXGRALRVNVAE 226 ++GQ GR++ VN A+ Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 82.0 bits (201), Expect = 1e-15 Identities = 35/78 (44%), Positives = 54/78 (69%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W D+ L FS+ G++VD++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 279 ALDGQSXXGRALRVNVAE 226 ++GQ GR++ VN A+ Sbjct: 68 GMNGQDLDGRSITVNEAQ 85 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -2 Query: 585 EKAEK-AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 454 EK+ K A+E + D++GR +TVN+A RG+ R G +R Sbjct: 59 EKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYR 103
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 80.5 bits (197), Expect = 3e-15 Identities = 34/78 (43%), Positives = 53/78 (67%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W D+ L FS+ G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 279 ALDGQSXXGRALRVNVAE 226 ++G+ GR + VN A+ Sbjct: 66 EMNGKELDGRTITVNEAQ 83
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 80.1 bits (196), Expect = 4e-15 Identities = 34/78 (43%), Positives = 52/78 (66%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W +D L + FS+ G + D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 279 ALDGQSXXGRALRVNVAE 226 ++GQ GR + VN A+ Sbjct: 66 GMNGQELDGRNITVNEAQ 83
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 78.6 bits (192), Expect = 1e-14 Identities = 34/78 (43%), Positives = 55/78 (70%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W ++ L + F+ G+V+D++V+ DR+TGRSRGFGFVT +S++ + DAI Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67 Query: 279 ALDGQSXXGRALRVNVAE 226 ++G+ GR + VN A+ Sbjct: 68 NMNGKELDGRNITVNQAQ 85
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 78.2 bits (191), Expect = 2e-14 Identities = 36/80 (45%), Positives = 52/80 (65%) Frame = -2 Query: 462 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 S ++++G L W DD+ L + F+ G VVDA+V+ DR+TGRSRGFGFV + AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 282 AALDGQSXXGRALRVNVAEE 223 + +DG+ GR +RVN A + Sbjct: 94 SEMDGKELNGRHIRVNPAND 113
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 77.4 bits (189), Expect = 3e-14 Identities = 33/78 (42%), Positives = 52/78 (66%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W +D L FS+ G V+D++++ DR++GRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 279 ALDGQSXXGRALRVNVAE 226 ++G+ GR + VN A+ Sbjct: 66 EMNGKELDGRVITVNEAQ 83
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 77.4 bits (189), Expect = 3e-14 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 6/130 (4%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVN--KAAPRGARVERPPRDSG----SSFRIYVGN 439 TM T+E A +E + ++ GR + VN + G + + S +++Y+GN Sbjct: 131 TMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGN 190 Query: 438 LPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSX 259 L V + L + FSE GKV+ A+V T +S GFGFV+ +S+EE++ AI AL+ Sbjct: 191 LAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVL 250 Query: 258 XGRALRVNVA 229 G+ +RVN A Sbjct: 251 EGQKIRVNKA 260 Score = 69.7 bits (169), Expect = 6e-12 Identities = 33/84 (39%), Positives = 52/84 (61%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D + R+YVGN+P +++ L + EHG + A V+YD+ +GRSR FGFVTM + E+ Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDA 138 Query: 294 DDAIAALDGQSXXGRALRVNVAEE 223 + I L+ GR ++VN+ E+ Sbjct: 139 NAVIEKLNDTEIGGRKIKVNITEK 162
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 76.6 bits (187), Expect = 5e-14 Identities = 33/78 (42%), Positives = 53/78 (67%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 +R +VG L W + L F+ +G+++D++V+ DR+TGRSRGFGFVT +S+ + DAI Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67 Query: 279 ALDGQSXXGRALRVNVAE 226 ++G+ GR + VN A+ Sbjct: 68 NMNGKELDGRNITVNQAQ 85
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 73.6 bits (179), Expect = 4e-13 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 306 QEELDDAIAALDGQSXXGRALRV-NVAEE 223 QE A+ L+G+ GRALRV N A E Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASE 95
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 73.6 bits (179), Expect = 4e-13 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 306 QEELDDAIAALDGQSXXGRALRV-NVAEE 223 QE A+ L+G+ GRALRV N A E Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASE 95
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 73.2 bits (178), Expect = 5e-13 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 306 QEELDDAIAALDGQSXXGRALRV-NVAEE 223 QE A+ L+G+ GRALRV N A E Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASE 95
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.2 bits (178), Expect = 5e-13 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 306 QEELDDAIAALDGQSXXGRALRV-NVAEE 223 QE A+ L+G+ GRALRV N A E Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASE 95
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.2 bits (178), Expect = 5e-13 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 306 QEELDDAIAALDGQSXXGRALRV-NVAEE 223 QE A+ L+G+ GRALRV N A E Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASE 95
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 73.2 bits (178), Expect = 5e-13 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 306 QEELDDAIAALDGQSXXGRALRV-NVAEE 223 QE A+ L+G+ GRALRV N A E Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASE 95
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 72.0 bits (175), Expect = 1e-12 Identities = 33/92 (35%), Positives = 56/92 (60%) Frame = -2 Query: 504 RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 325 R A++ +P +DS + ++VG L W VDD L + F E+G +V ARV+ D +GRS+G+G Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307 Query: 324 FVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 +V + E A+AA + GR + ++++ Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLS 339 Score = 46.6 bits (109), Expect = 5e-05 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 9/128 (7%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF---------RIYVGN 439 T E A+ AV +++GR++ ++ + PR A + + +F ++VGN Sbjct: 313 TPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGN 372 Query: 438 LPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSX 259 L + + L F G + R+ D +GR +GFG+VT + + + ++G Sbjct: 373 LSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFI 431 Query: 258 XGRALRVN 235 GR R++ Sbjct: 432 AGRPCRLD 439
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 70.1 bits (170), Expect = 5e-12 Identities = 36/76 (47%), Positives = 49/76 (64%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 IYVGNL + V ++ L +F+E+G V ++ DR+TGR RGFGFV + + E AI AL Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 273 DGQSXXGRALRVNVAE 226 DG GR L+VN A+ Sbjct: 63 DGAEWMGRDLKVNKAK 78
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 68.6 bits (166), Expect = 1e-11 Identities = 31/76 (40%), Positives = 54/76 (71%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 68.6 bits (166), Expect = 1e-11 Identities = 31/76 (40%), Positives = 54/76 (71%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 68.6 bits (166), Expect = 1e-11 Identities = 31/76 (40%), Positives = 54/76 (71%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 68.6 bits (166), Expect = 1e-11 Identities = 31/76 (40%), Positives = 54/76 (71%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 68.6 bits (166), Expect = 1e-11 Identities = 31/76 (40%), Positives = 54/76 (71%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 68.2 bits (165), Expect = 2e-11 Identities = 33/81 (40%), Positives = 50/81 (61%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 291 DAIAALDGQSXXGRALRVNVA 229 DA+ A++G+S GR +RV+ A Sbjct: 62 DAMRAMNGESLDGRQIRVDHA 82
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 66.6 bits (161), Expect = 5e-11 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Frame = -2 Query: 567 VEMFHRYDVNGRLLTVNKAAPRGARV------ERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 VE +D N L T+N V + S +F ++VG+L VDD L Sbjct: 119 VEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLR 178 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F + + V++D TG SRG+GFV+ SQ++ +A+ ++ GQ GR LR+N A Sbjct: 179 NAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 237 Score = 33.5 bits (75), Expect = 0.48 Identities = 16/75 (21%), Positives = 38/75 (50%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +YVGNL + + L + F G + + +++ D++ ++ + FV + + A+ L Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTL 134 Query: 273 DGQSXXGRALRVNVA 229 +G+ +++N A Sbjct: 135 NGKQIENNIVKINWA 149 Score = 30.8 bits (68), Expect = 3.1 Identities = 23/87 (26%), Positives = 39/87 (44%) Frame = -2 Query: 483 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 304 PPR + + Y+GN+P ++ L+ LF G ++D + + +G F+ + Sbjct: 336 PPRVTTA----YIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTH 385 Query: 303 EELDDAIAALDGQSXXGRALRVNVAEE 223 E+ I AL GR LR +E Sbjct: 386 EQAAVCIVALANFPFQGRNLRTGWGKE 412
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 66.6 bits (161), Expect = 5e-11 Identities = 29/76 (38%), Positives = 54/76 (71%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L ++ ++ L + F+++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S GR +RV+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 66.2 bits (160), Expect = 7e-11 Identities = 38/123 (30%), Positives = 65/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E A+KA+E + +N R + V + R R + +Y+ N +VDD Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L ELFS+ GK + +V+ D G+S+GFGFV+ E+ + A+ ++G+ G+ + V Sbjct: 207 LKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 61.2 bits (147), Expect = 2e-09 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 12/132 (9%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 442 E A KAVE + +++G+++ V +A + R ER R G + +Y+ Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIK 299 Query: 441 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 262 NL +DD +L + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 261 XXGRALRVNVAE 226 + L V +A+ Sbjct: 358 VGSKPLYVALAQ 369
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 66.2 bits (160), Expect = 7e-11 Identities = 40/123 (32%), Positives = 62/123 (50%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E A +A++ + +N R + V R R +Y+ N +DD R Sbjct: 147 TQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E+FS G + +V+ D DTGRSRGFGFV + EE A++ ++G+ GR + V Sbjct: 207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 65.9 bits (159), Expect = 9e-11 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 442 E+A+KAV + +VNGR++ V +A R R ER R G + +YV Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN--LYVK 299 Query: 441 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 262 NL +DD RL + FS +G + A+V+ + G S+GFGFV +S EE A+ ++G+ Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 261 XXGRALRVNVAE--EXXXXXXXXRYIWRCTTTRLL 163 + L V +A+ E +Y+ R T R + Sbjct: 358 VSTKPLYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 43.5 bits (101), Expect = 5e-04 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLV 406 AE+A++ + + GR + + + +R P R SG +++ NL +D+ L Sbjct: 65 AERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDESIDNKALY 116 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 + FS G ++ +VV D SRG+GFV +QE + AI ++G R + V Sbjct: 117 DTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 65.5 bits (158), Expect = 1e-10 Identities = 32/80 (40%), Positives = 51/80 (63%) Frame = -2 Query: 462 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 S ++Y+G L D+ L + FS V +ARV+ ++ TGRSRG+GFV S++ + AI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 282 AALDGQSXXGRALRVNVAEE 223 +A++GQ G + VNVA++ Sbjct: 90 SAMNGQELNGFNISVNVAKD 109
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 65.1 bits (157), Expect = 1e-10 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Frame = -2 Query: 567 VEMFHRYDVNGRLLTVNKAAPRGARVE--------RPPRDSGSSFRIYVGNLPWQVDDSR 412 VE + D L +N G V+ +D+ + F ++VG+L ++ Sbjct: 53 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 112 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 + F+ GK+ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ GR +R N Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 172 Query: 231 A 229 A Sbjct: 173 A 173 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/82 (26%), Positives = 43/82 (52%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D G +YVGNL V + +++LFS+ G +++ + + + + FV + Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDA 61 Query: 294 DDAIAALDGQSXXGRALRVNVA 229 A+AA++G+ G+ ++VN A Sbjct: 62 AAALAAMNGRKILGKEVKVNWA 83
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 65.1 bits (157), Expect = 1e-10 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Frame = -2 Query: 567 VEMFHRYDVNGRLLTVNKAAPRGARVE--------RPPRDSGSSFRIYVGNLPWQVDDSR 412 VE + D L +N G V+ +D+ + F ++VG+L ++ Sbjct: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 129 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 + F+ GK+ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ GR +R N Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189 Query: 231 A 229 A Sbjct: 190 A 190 Score = 37.7 bits (86), Expect = 0.026 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 15/97 (15%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR----SRGFG------ 325 D G +YVGNL V + +++LFS+ G +++ ++ R S GF Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 324 -----FVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 FV + A+AA++G+ G+ ++VN A Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 64.7 bits (156), Expect = 2e-10 Identities = 39/123 (31%), Positives = 62/123 (50%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E A +A++ + +N R + V R R +Y+ N +DD R Sbjct: 147 THEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E+FS G + +V+ D D+GRSRGFGFV + EE A++ ++G+ GR + V Sbjct: 207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 63.5 bits (153), Expect = 4e-10 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 436 E+A+KAV + +VNGR++ V +A R R R + +YV NL Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + F +G + A+V+ + G S+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTRLL 163 + L V +A+ E +Y+ R T R + Sbjct: 360 TKPLYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 41.6 bits (96), Expect = 0.002 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 2/116 (1%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLV 406 AE+A++ + + GR + + + +R P R SG +++ NL +D+ L Sbjct: 65 AERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDESIDNKALY 116 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 + FS G ++ +VV D SRG+GFV + E + AI ++G R + V Sbjct: 117 DTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFV 170
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 64.7 bits (156), Expect = 2e-10 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E A+ A+++ + + G+ + VNKA+ + D G++ I+VGNL +VD+ L Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNKASAHEKNM-----DVGAN--IFVGNLDPEVDEKLLY 117 Query: 405 ELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 + FS G ++ +++ D D+G S+GF F+ AS E D A+ A++GQ RA+ V+ A Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/75 (40%), Positives = 41/75 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 IYVG L +V +S L EL + G VV + DR T +GFGFV +E+ D AI L Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 273 DGQSXXGRALRVNVA 229 + G+ ++VN A Sbjct: 75 NMIKLYGKPIKVNKA 89
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 64.7 bits (156), Expect = 2e-10 Identities = 32/81 (39%), Positives = 49/81 (60%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 291 DAIAALDGQSXXGRALRVNVA 229 A+ A++G+S GR +RV+ A Sbjct: 62 VAMRAMNGESLDGRQIRVDHA 82
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 64.3 bits (155), Expect = 3e-10 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Frame = -2 Query: 567 VEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 V+ D + TVN R R++ RP +S +YV NLP + D L ++ Sbjct: 148 VDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKI 207 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXG--RALRVNVAE 226 F ++G +V ++ D+ TGR RG FV +EE +AI+AL+ G + L V +AE Sbjct: 208 FGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAE 267 Query: 225 E 223 E Sbjct: 268 E 268
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 63.9 bits (154), Expect = 3e-10 Identities = 35/116 (30%), Positives = 63/116 (54%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 A+KA+ + + + + V+ A P A + RD+ +YV LP + + +L Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMSQKEMEQL 144 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G A + V Sbjct: 145 FSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200 Score = 58.5 bits (140), Expect = 1e-08 Identities = 31/79 (39%), Positives = 49/79 (62%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 291 DAIAALDGQSXXGRALRVN 235 AIA+L+G R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 46.2 bits (108), Expect = 7e-05 Identities = 26/95 (27%), Positives = 42/95 (44%) Frame = -2 Query: 513 AAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSR 334 A P G + S + V LP + LF G + ++V D+ TG+S Sbjct: 21 ALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSL 80 Query: 333 GFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 G+GFV + + D AI L+G + ++V+ A Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 63.5 bits (153), Expect = 4e-10 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 442 E+A+KAV + +VNGR++ V +A R R ER R G + +YV Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN--LYVK 299 Query: 441 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 262 NL +DD RL + FS +G + +V+ + G S+GFGFV +S EE A+ ++G+ Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 261 XXGRALRVNVAE--EXXXXXXXXRYIWRCTTTRLL 163 + L V +A+ E +Y+ R T R + Sbjct: 358 VSTKPLYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 62.4 bits (150), Expect = 1e-09 Identities = 38/123 (30%), Positives = 61/123 (49%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E A +A++ + +N R + V R R +Y+ N +DD R Sbjct: 147 TQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E+FS G + +V+ D ++GRSRGFGFV + EE A+ ++G+ GR + V Sbjct: 207 LKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 42.0 bits (97), Expect = 0.001 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLV 406 AE+A++ + + GR + + + +R P R SG +++ NL +D+ L Sbjct: 65 AERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDDSIDNKALY 116 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 + FS G ++ +VV D SRG+GFV +QE + AI ++G R + V Sbjct: 117 DTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 63.5 bits (153), Expect = 4e-10 Identities = 36/116 (31%), Positives = 62/116 (53%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AEKA+ + + + + V+ A P A + RD+ +YV LP + L +L Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQL 144 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 342 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G R L+V+ Sbjct: 343 EAAMAIASLNGYRLGDRVLQVS 364 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 285 IAALDGQSXXGRALRVNVA 229 I L+G + ++V+ A Sbjct: 97 INTLNGLRLQTKTIKVSYA 115
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 63.5 bits (153), Expect = 4e-10 Identities = 35/116 (30%), Positives = 63/116 (54%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 A+KA+ + + + + V+ A P A + RD+ +YV LP + + +L Sbjct: 93 ADKAINTLNGLKLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMSQKEMEQL 144 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G A + V Sbjct: 145 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200 Score = 58.5 bits (140), Expect = 1e-08 Identities = 31/79 (39%), Positives = 49/79 (62%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 291 DAIAALDGQSXXGRALRVN 235 AIA+L+G R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 46.2 bits (108), Expect = 7e-05 Identities = 26/95 (27%), Positives = 42/95 (44%) Frame = -2 Query: 513 AAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSR 334 A P G + S + V LP + LF G + ++V D+ TG+S Sbjct: 21 ALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSL 80 Query: 333 GFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 G+GFV + + D AI L+G + ++V+ A Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 63.5 bits (153), Expect = 4e-10 Identities = 36/116 (31%), Positives = 62/116 (53%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AEKA+ + + + + V+ A P A + RD+ +YV LP + L +L Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQL 151 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G R L+V+ Sbjct: 350 EAAMAIASLNGYRLGDRVLQVS 371 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 285 IAALDGQSXXGRALRVNVA 229 I L+G + ++V+ A Sbjct: 104 INTLNGLRLQTKTIKVSYA 122
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 63.5 bits (153), Expect = 4e-10 Identities = 36/116 (31%), Positives = 62/116 (53%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AEKA+ + + + + V+ A P A + RD+ +YV LP + L +L Sbjct: 105 AEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQL 156 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 157 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 354 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G R L+V+ Sbjct: 355 EAAMAIASLNGYRLGDRVLQVS 376 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108 Query: 285 IAALDGQSXXGRALRVNVA 229 I L+G + ++V+ A Sbjct: 109 INTLNGLRLQTKTIKVSYA 127
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 63.5 bits (153), Expect = 4e-10 Identities = 37/123 (30%), Positives = 64/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E AE+A++ + +N R + V + R R + +Y+ N +DD R Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDER 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E F ++G + +V+ D D G+SRGFGFV+ E+ A+ ++G+ G+A+ V Sbjct: 207 LKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 62.4 bits (150), Expect = 1e-09 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 12/152 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 436 E A+KAV+ + D+NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + F+ G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTRL 166 + L V +A+ E +Y+ R + R+ Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVRV 391 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 273 DGQSXXGRALRV 238 +G R + V Sbjct: 159 NGMLLNDRKVFV 170
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 63.2 bits (152), Expect = 6e-10 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E A+ A+++ + + G+ + VNKA+ + D G++ I++GNL ++D+ L Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNL-----DVGAN--IFIGNLDPEIDEKLLY 117 Query: 405 ELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 + FS G ++ +++ D DTG S+G+ F+ AS + D AI A++GQ R + V+ A Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177 Score = 56.6 bits (135), Expect = 5e-08 Identities = 31/85 (36%), Positives = 47/85 (55%) Frame = -2 Query: 483 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 304 P + +YVG L +V + L ELF + G VV+ + DR TG+ +G+GFV S+ Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64 Query: 303 EELDDAIAALDGQSXXGRALRVNVA 229 E+ D AI ++ G+ +RVN A Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKA 89
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 62.8 bits (151), Expect = 7e-10 Identities = 36/123 (29%), Positives = 64/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E AE+A+E + +N R + V + R R + +Y+ N +DD R Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDER 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ G+ + V Sbjct: 207 LKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 61.2 bits (147), Expect = 2e-09 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 12/151 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 436 E A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTR 169 + L V +A+ E +Y+ R + R Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 273 DGQSXXGRALRV 238 +G R + V Sbjct: 159 NGMLLNDRKVFV 170
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 62.8 bits (151), Expect = 7e-10 Identities = 36/116 (31%), Positives = 62/116 (53%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AEKA+ + + + + V+ A P A + RD+ +YV LP + L +L Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQL 144 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/82 (37%), Positives = 49/82 (59%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Frame = -2 Query: 480 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 P DSG S + LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 312 ASQEELDDAIAALDGQSXXGRALRVNVA 229 ++ + AI L+G + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 62.8 bits (151), Expect = 7e-10 Identities = 36/116 (31%), Positives = 62/116 (53%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AEKA+ + + + + V+ A P A + RD+ +YV LP + L +L Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQL 144 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/82 (37%), Positives = 49/82 (59%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = -2 Query: 480 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 312 ASQEELDDAIAALDGQSXXGRALRVNVA 229 ++ + AI L+G + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 62.8 bits (151), Expect = 7e-10 Identities = 36/116 (31%), Positives = 62/116 (53%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AEKA+ + + + + V+ A P A + RD+ +YV LP + L +L Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQL 144 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/82 (37%), Positives = 49/82 (59%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = -2 Query: 480 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 312 ASQEELDDAIAALDGQSXXGRALRVNVA 229 ++ + AI L+G + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 62.8 bits (151), Expect = 7e-10 Identities = 36/116 (31%), Positives = 62/116 (53%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AEKA+ + + + + V+ A P A + RD+ +YV LP + L +L Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELEQL 144 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 FS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/82 (37%), Positives = 49/82 (59%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 270 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 329 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G R L+V+ Sbjct: 330 EAAMAIASLNGYRLGDRVLQVS 351 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%) Frame = -2 Query: 480 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 312 ASQEELDDAIAALDGQSXXGRALRVNVA 229 ++ + AI L+G + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 62.4 bits (150), Expect = 1e-09 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS-SFRIYVGNLPWQVDDSRL 409 E +KA E+ +++ ++GR L V K P G R + +G ++V NL ++V +L Sbjct: 121 ESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKL 179 Query: 408 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 E+FS G VV A ++ D+D G+SRG G VT E AI+ +GQ R + V + Sbjct: 180 KEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 238 Query: 228 E 226 E Sbjct: 239 E 239 Score = 38.1 bits (87), Expect = 0.020 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 670 Query: 276 LDGQSXXGRALRVNV 232 ++G GR + V + Sbjct: 671 MNGMKLSGREIDVRI 685
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 62.4 bits (150), Expect = 1e-09 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 12/151 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFRI---YVGNL 436 E A+KAV+ + ++NG+ + V +A + R E+ +D + +++ YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTR 169 + L V +A+ E Y+ R + R Sbjct: 360 TKPLYVALAQRKEERQAYLTNEYMQRMASVR 390 Score = 61.6 bits (148), Expect = 2e-09 Identities = 35/123 (28%), Positives = 65/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E AE+A++ + +NGR + V + R R + +Y+ N +DD R Sbjct: 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDER 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ G+ + V Sbjct: 207 LKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%) Frame = -2 Query: 567 VEMFHRYDVNGRLLTVNKAAPRGARV-----ERPP--RDSGSSFRIYVGNLPWQVDDSRL 409 V H D L T+N +G V +R P R SG I+V NL +++ L Sbjct: 57 VNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKAL 115 Query: 408 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 + S G ++ VV D + S+G+GFV + E + AI ++G GR + V Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 62.4 bits (150), Expect = 1e-09 Identities = 28/75 (37%), Positives = 45/75 (60%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I+VG L W +DD L + F G V+ ARV+Y+R T RSRG+G+V ++ + AI + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 273 DGQSXXGRALRVNVA 229 G+ GR + +++ Sbjct: 230 QGKEIDGRPINCDMS 244 Score = 61.6 bits (148), Expect = 2e-09 Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLL----TVNKAAPRGARVER-PPRDSGSSFRIYVGNLPWQVDDS 415 AEKA++ +++GR + + +K A R ++ S S +++GNL + D Sbjct: 222 AEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRD 281 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 + ELF++HG+VV R+ +T + +GFG+V ++ E+ A+ AL G+ R +R++ Sbjct: 282 AIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 62.0 bits (149), Expect = 1e-09 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 4/134 (2%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + D A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 276 LDGQSXXGRALRVNV----AEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIIIL 109 GR VN+ A+ + + T L+++ + TP P I+ Sbjct: 93 -PNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPT-LIQRTYGLTPHYIYPPAIVQ 150 Query: 108 PSILVPCMSPLSTL 67 PS+++P +P+ +L Sbjct: 151 PSVVIPA-TPVPSL 163
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 2e-09 Identities = 35/123 (28%), Positives = 64/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E AE+A+E + +N R + V + R R + +Y+ N +DD R Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDER 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ G+ + V Sbjct: 207 LKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 61.2 bits (147), Expect = 2e-09 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 12/151 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 436 E A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTR 169 + L V +A+ E +Y+ R + R Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 273 DGQSXXGRALRV 238 +G R + V Sbjct: 159 NGMLLNDRKVFV 170
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 2e-09 Identities = 35/123 (28%), Positives = 64/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E AE+A+E + +N R + V + R R + +Y+ N +DD R Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDER 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ G+ + V Sbjct: 207 LKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 61.2 bits (147), Expect = 2e-09 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 12/151 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 436 E A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTR 169 + L V +A+ E +Y+ R + R Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 273 DGQSXXGRALRV 238 +G R + V Sbjct: 159 NGMLLNDRKVFV 170
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/81 (37%), Positives = 50/81 (61%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 S + F ++VG+L Q+ + F+ G++ DARVV D TG+S+G+GFV+ ++ + + Sbjct: 102 SQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 291 DAIAALDGQSXXGRALRVNVA 229 +AI + GQ GR +R N A Sbjct: 162 NAIQQMGGQWLGGRQIRTNWA 182 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/75 (29%), Positives = 42/75 (56%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +YVGNL V ++ +++LFS+ G + +++ DT + + FV A+AA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 273 DGQSXXGRALRVNVA 229 +G+ G+ ++VN A Sbjct: 67 NGRKIMGKEVKVNWA 81
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVER----------PPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 + ++GR + PRG + ER P DS S +I+VG +P ++ L E Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREY 132 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 F + G V + ++YD + R RGFGF+T ++ +D A+ Sbjct: 133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 276 ----LDGQS 262 LDG++ Sbjct: 71 RPHTLDGRN 79
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.2 bits (147), Expect = 2e-09 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 12/151 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 436 E A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTR 169 + L V +A+ E +Y+ R + R Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 61.2 bits (147), Expect = 2e-09 Identities = 35/123 (28%), Positives = 64/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E AE+A+E + +N R + V + + R + +Y+ N +DD R Sbjct: 147 TQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDER 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ G+ + V Sbjct: 207 LKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 273 DGQSXXGRALRV 238 +G R + V Sbjct: 159 NGMLLNDRKVFV 170
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 61.2 bits (147), Expect = 2e-09 Identities = 34/123 (27%), Positives = 65/123 (52%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E AE+A++ + +N R + V + R R + +Y+ N ++D R Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDER 206 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E+F ++G + +V+ D D G+S+GFGFV+ E+ A+ ++G+ G+++ V Sbjct: 207 LKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGR 265 Query: 231 AEE 223 A++ Sbjct: 266 AQK 268 Score = 60.8 bits (146), Expect = 3e-09 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 12/152 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 436 E A+KAV+ + D+NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DD RL + F G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 255 GRALRVNVAE--EXXXXXXXXRYIWRCTTTRL 166 + L V +A+ E +Y+ R + R+ Sbjct: 360 TKPLYVALAQRKEERQAHLTNQYMQRMASVRV 391 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRLV 406 AE+A++ + + GR + + + +R P R SG I++ NL +D+ L Sbjct: 65 AERALDTMNFDVIKGRPVRIMWS-------QRDPSLRKSGVG-NIFIKNLDKSIDNKALY 116 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 + FS G ++ +VV D + S+G+GFV +QE + AI ++G R + V Sbjct: 117 DTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 61.2 bits (147), Expect = 2e-09 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 +++A+++ + V + L V+ A P G ++ +YV NLP + D +L + Sbjct: 179 SQRAIKVLNGITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDTI 230 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXG--RALRVNVAE 226 F ++G +V ++ D+ TGR RG FV +EE +AI+AL+ G + L V +AE Sbjct: 231 FGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE 290 Query: 225 E 223 E Sbjct: 291 E 291
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 60.8 bits (146), Expect = 3e-09 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Frame = -2 Query: 567 VEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 V+ D + ++N R R++ RP +S +YV NLP + D L ++ Sbjct: 131 VDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKI 190 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXG--RALRVNVAE 226 F ++G +V ++ D+ TG+ RG FV +EE +AI+AL+ G + L V +AE Sbjct: 191 FGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAE 250 Query: 225 E 223 E Sbjct: 251 E 251
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 60.5 bits (145), Expect = 4e-09 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E A +++ + +NG+ + V K PR R + + +YV N DD + Sbjct: 139 TEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEK 198 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS-XXGRALRVN 235 L E F +GK+ +V+ ++ G+S+GFGFV + E + A+ AL+G+ G++L V Sbjct: 199 LKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVA 257 Query: 234 VAEE 223 A++ Sbjct: 258 RAQK 261 Score = 59.3 bits (142), Expect = 8e-09 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 11/133 (8%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPR----------DSGSSFRIYV 445 T E AE AV+ + D+ G+ L V +A + R + R +S +YV Sbjct: 232 TTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYV 291 Query: 444 GNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQ 265 NL +DD RL FS +G + A+V+ D + GRS+GFGFV + E A+ L+G+ Sbjct: 292 KNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGR 350 Query: 264 SXXGRALRVNVAE 226 + L V +A+ Sbjct: 351 VVGSKPLYVALAQ 363 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +YVG+LP V++S L + FS G V+ RV D T RS G+ +V + + A+ + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 273 DGQSXXGRALRV 238 + + +R+ Sbjct: 64 NFDLVRNKPIRI 75 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/72 (26%), Positives = 40/72 (55%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +++ NL +D+ + + FS G ++ +V D + G S+G+GFV ++E + +I + Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKV 150 Query: 273 DGQSXXGRALRV 238 +G G+ + V Sbjct: 151 NGMLLNGKKVYV 162
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 60.5 bits (145), Expect = 4e-09 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 12/132 (9%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 442 E A KAVE + ++NG L V +A + R+ E+ + G + ++V Sbjct: 269 EDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVK 326 Query: 441 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 262 NL VDD +L E F+ +G + A+V+ + G+S+GFGFV ++ EE AI + Q Sbjct: 327 NLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQI 385 Query: 261 XXGRALRVNVAE 226 G+ L V +A+ Sbjct: 386 VAGKPLYVAIAQ 397 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSR 412 E KA+E + + GRL + + +R P R GS I++ NL +D+ Sbjct: 89 EAGRKAIEQLNYTPIKGRLCRIMWS-------QRDPSLRKKGSG-NIFIKNLHPDIDNKA 140 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 L + FS G ++ +++ D + G+S+GFGFV + +AI AL+G G+ + V Sbjct: 141 LYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197 Score = 51.2 bits (121), Expect = 2e-06 Identities = 33/119 (27%), Positives = 57/119 (47%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 A++A++ + +NG+ + V R R + +YV N+ + D + EL Sbjct: 178 AKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQEL 237 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAEE 223 F++ G +V A + D D G+ +GFGFV E+ A+ AL+ G L V A++ Sbjct: 238 FAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 295 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/76 (34%), Positives = 36/76 (47%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 SS +YVG+L V ++ L ++FS G V RV D T S G+ +V E A Sbjct: 35 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 94 Query: 285 IAALDGQSXXGRALRV 238 I L+ GR R+ Sbjct: 95 IEQLNYTPIKGRLCRI 110
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 60.5 bits (145), Expect = 4e-09 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 4/134 (2%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + + A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 276 LDGQSXXGRALRVNV----AEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIIIL 109 GR VN+ A+ + + T L+++ + TP P I+ Sbjct: 72 -PNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPT-LIQRTYGLTPHYIYPPAIVQ 129 Query: 108 PSILVPCMSPLSTL 67 PS+++P +P+ +L Sbjct: 130 PSVVIPA-APVPSL 142
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 60.1 bits (144), Expect = 5e-09 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 10/99 (10%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVER----------PPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 + ++GR + PRG + ER P D+ S +I+VG +P ++ L E Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREY 132 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 F + G V + ++YD + R RGFGF+T ++ +D A+ Sbjct: 133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 276 ----LDGQS 262 LDG++ Sbjct: 71 RPHTLDGRN 79
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 234 VAEE 223 A++ Sbjct: 273 RAQK 276
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 234 VAEE 223 A++ Sbjct: 273 RAQK 276
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 234 VAEE 223 A++ Sbjct: 273 RAQK 276
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 234 VAEE 223 A++ Sbjct: 273 RAQK 276
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 234 VAEE 223 A++ Sbjct: 273 RAQK 276
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 234 VAEE 223 A++ Sbjct: 273 RAQK 276
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 60.1 bits (144), Expect = 5e-09 Identities = 32/86 (37%), Positives = 46/86 (53%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64 Query: 306 QEELDDAIAALDGQSXXGRALRVNVA 229 + + +DA+ A+DG GR LRV +A Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMA 90
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 60.1 bits (144), Expect = 5e-09 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 +++A+++ + V + L V+ A P G ++ +YV NLP + D +L + Sbjct: 181 SQRAIKVLNGITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDTI 232 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXG--RALRVNVAE 226 F ++G +V ++ D+ TGR RG FV +EE +AI+AL+ G + L V +A+ Sbjct: 233 FGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQ 292 Query: 225 E 223 E Sbjct: 293 E 293
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 60.1 bits (144), Expect = 5e-09 Identities = 32/86 (37%), Positives = 46/86 (53%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 306 QEELDDAIAALDGQSXXGRALRVNVA 229 + + +DA+ A+DG GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 60.1 bits (144), Expect = 5e-09 Identities = 32/86 (37%), Positives = 46/86 (53%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 306 QEELDDAIAALDGQSXXGRALRVNVA 229 + + +DA+ A+DG GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 60.1 bits (144), Expect = 5e-09 Identities = 32/86 (37%), Positives = 46/86 (53%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 306 QEELDDAIAALDGQSXXGRALRVNVA 229 + + +DA+ A+DG GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 60.1 bits (144), Expect = 5e-09 Identities = 32/86 (37%), Positives = 46/86 (53%) Frame = -2 Query: 486 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 307 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 306 QEELDDAIAALDGQSXXGRALRVNVA 229 + + +DA+ A+DG GR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 59.7 bits (143), Expect = 6e-09 Identities = 25/58 (43%), Positives = 43/58 (74%) Frame = -2 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 FS +G+V++++++ DR+T RSRGFGFVT +++E + AI ++G+ GR + VN A+ Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGAR 493 T ST E A+E + +++GR +TVN+A RG R Sbjct: 34 TFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 59.7 bits (143), Expect = 6e-09 Identities = 29/81 (35%), Positives = 49/81 (60%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 S F ++VG+L ++ + F+ G++ DARVV D TG+S+G+GFV+ ++ + + Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 291 DAIAALDGQSXXGRALRVNVA 229 +AI + GQ GR +R N A Sbjct: 162 NAIQQMGGQWLGGRQIRTNWA 182 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/75 (29%), Positives = 42/75 (56%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +YVGNL V ++ +++LFS+ G + +++ DT + + FV A+AA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 273 DGQSXXGRALRVNVA 229 +G+ G+ ++VN A Sbjct: 67 NGRKIMGKEVKVNWA 81
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 59.7 bits (143), Expect = 6e-09 Identities = 25/76 (32%), Positives = 50/76 (65%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT+ S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 59.7 bits (143), Expect = 6e-09 Identities = 25/76 (32%), Positives = 49/76 (64%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 59.7 bits (143), Expect = 6e-09 Identities = 29/85 (34%), Positives = 48/85 (56%) Frame = -2 Query: 477 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 298 + +G R+YVG+L + + + L +F GK+ + ++ D DTGRS+G+GF+T + E Sbjct: 257 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 316 Query: 297 LDDAIAALDGQSXXGRALRVNVAEE 223 A+ L+G GR +RV E Sbjct: 317 ARRALEQLNGFELAGRPMRVGHVTE 341 Score = 35.8 bits (81), Expect = 0.097 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = -2 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L + FS GKV D R++ DR++ RS+G +V + + AI L GQ G + V Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 240 Query: 231 AE 226 ++ Sbjct: 241 SQ 242
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 59.3 bits (142), Expect = 8e-09 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 436 E A AVE + + +L V +A + R E R + +Y+ NL Sbjct: 280 EAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 VDD +L E+FSE+G V ++V+ + G SRGFGFV ++ EE A++ ++G+ Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIG 398 Query: 255 GRALRVNVAE 226 + L + +A+ Sbjct: 399 RKPLYIALAQ 408 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++ NL +D+ L E FS G ++ +V D TGRS+G+GFV +E AI L Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 273 DG 268 +G Sbjct: 197 NG 198 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/121 (26%), Positives = 54/121 (44%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E A+ A++ + +N + + V R R + +YV NLP ++ + L Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 + F + G V+ + VV +G SR FGFV E A+ ++G S L V A+ Sbjct: 247 KTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305 Query: 225 E 223 + Sbjct: 306 K 306 Score = 35.8 bits (81), Expect = 0.097 Identities = 20/72 (27%), Positives = 38/72 (52%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +Y G+L +V ++ L +LF VV RV D++ RS G+ ++ ++ + A+ AL Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109 Query: 273 DGQSXXGRALRV 238 + R +R+ Sbjct: 110 NYTPLFDRPIRI 121
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 59.3 bits (142), Expect = 8e-09 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 +++A++ + V + L V+ A P G ++ +YV NLP + D +L + Sbjct: 164 SQRAIKSLNGITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDTI 215 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXG--RALRVNVAE 226 F ++G +V ++ D+ TG+ RG FV +EE +AI+AL+ G + L V +AE Sbjct: 216 FGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAE 275 Query: 225 E 223 E Sbjct: 276 E 276
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 58.9 bits (141), Expect = 1e-08 Identities = 29/110 (26%), Positives = 55/110 (50%) Frame = -2 Query: 519 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 340 N+AA +++ S R+YVG+L + + + L +F G++ +++ D +TGR Sbjct: 233 NRAAAMANNLQK---GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289 Query: 339 SRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAEEXXXXXXXXRYI 190 S+G+GF+T + E A+ L+G GR ++V E ++ Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFL 339 Score = 39.7 bits (91), Expect = 0.007 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 15/112 (13%) Frame = -2 Query: 516 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV---------------ELFSEHGK 382 K + R +R + P R S R + NL + D+R V E FS GK Sbjct: 119 KLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGK 178 Query: 381 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 V D R++ DR++ RSRG +V + AI L GQ G + V ++ Sbjct: 179 VRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQ 229
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 58.9 bits (141), Expect = 1e-08 Identities = 29/110 (26%), Positives = 55/110 (50%) Frame = -2 Query: 519 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 340 N+AA +++ S R+YVG+L + + + L +F G++ +++ D +TGR Sbjct: 233 NRAAAMANNLQK---GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289 Query: 339 SRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAEEXXXXXXXXRYI 190 S+G+GF+T + E A+ L+G GR ++V E ++ Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFL 339 Score = 38.9 bits (89), Expect = 0.011 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 15/112 (13%) Frame = -2 Query: 516 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV---------------ELFSEHGK 382 K + R +R + P R S R + NL + D+R V E FS GK Sbjct: 119 KLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGK 178 Query: 381 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 V D R++ DR++ RS+G +V + AI L GQ G + V ++ Sbjct: 179 VRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQ 229
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 10/130 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 436 E A+KAV+ + + G+ L V +A + R E + + +++ NL Sbjct: 312 ECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNL 371 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +VDD RL FS G + A+++ D + G+S+GFGFV + EE + A+ ++ + Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430 Query: 255 GRALRVNVAE 226 G+ L V +A+ Sbjct: 431 GKPLYVALAQ 440 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/123 (24%), Positives = 59/123 (47%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 ++E A A+E + +N + + V R R + + +Y+ NL ++ + Sbjct: 217 SVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQE 276 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 +LF + G++ +V D++ + RGFGFV A+ E A+ L+ + G+ L V Sbjct: 277 FSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGR 335 Query: 231 AEE 223 A++ Sbjct: 336 AQK 338 Score = 45.8 bits (107), Expect = 9e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -2 Query: 492 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 V P + +S +YVG L V ++ L ELF+ G V RV D T RS G+ +V Sbjct: 69 VATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128 Query: 312 ASQEELDDAIAALDGQSXXGRALRV 238 + E+ + A+ L+ GR R+ Sbjct: 129 HNMEDGEKALDELNYTLIKGRPCRI 153
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 58.2 bits (139), Expect = 2e-08 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 11/100 (11%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVER-----------PPRDSGSSFRIYVGNLPWQVDDSRLVE 403 + ++GR + PRG + ER P ++ S +I+VG +P ++ L E Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKE 132 Query: 402 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 F+ G V + ++YD + R RGFGF+T ++ +D A+ Sbjct: 133 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 276 ----LDGQS 262 LDG++ Sbjct: 71 RPHTLDGRN 79
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 57.8 bits (138), Expect = 2e-08 Identities = 24/76 (31%), Positives = 48/76 (63%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 276 LDGQSXXGRALRVNVA 229 ++G+S G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 57.4 bits (137), Expect = 3e-08 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Frame = -2 Query: 543 VNGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVV 376 V+G + AAP + + P ++ S R++V N+P++ D L ++F + GK++ Sbjct: 84 VSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 143 Query: 375 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 D ++++ S+GFGFVT + + D A L G GR + VN A Sbjct: 144 DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 57.4 bits (137), Expect = 3e-08 Identities = 29/82 (35%), Positives = 49/82 (59%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P ++ S + I++ NL D+ L ++F G V + +V+ D +T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G + L+V+ Sbjct: 297 EAAMAIASLNGYRLGDKILQVS 318 Score = 54.7 bits (130), Expect = 2e-07 Identities = 29/120 (24%), Positives = 59/120 (49%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T + AE+A+ + + + + V+ A RP + +Y+ LP + Sbjct: 70 TAKDAERAINTLNGLRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKD 121 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 + ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + +G G + + V Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI L Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 273 DGQSXXGRALRVNVA 229 +G + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 57.0 bits (136), Expect = 4e-08 Identities = 29/82 (35%), Positives = 49/82 (59%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P ++ S + I++ NL D+ L ++F G V + +V+ D +T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 300 ELDDAIAALDGQSXXGRALRVN 235 E AIA+L+G + L+V+ Sbjct: 297 ESAMAIASLNGYRLGDKILQVS 318 Score = 53.1 bits (126), Expect = 6e-07 Identities = 29/120 (24%), Positives = 58/120 (48%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T + AE+A+ + + + + V+ A RP + +Y+ LP + Sbjct: 70 TAKDAERAISTLNGLRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKD 121 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 + ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + G G + + V Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITV 181 Score = 46.6 bits (109), Expect = 5e-05 Identities = 23/75 (30%), Positives = 41/75 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI+ L Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 273 DGQSXXGRALRVNVA 229 +G + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 56.2 bits (134), Expect = 7e-08 Identities = 28/84 (33%), Positives = 49/84 (58%) Frame = -2 Query: 543 VNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARV 364 ++G+++ +A PR + + +I+VG + V E FS+ G ++DA++ Sbjct: 223 LDGKVIDPKRAIPRD--------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL 274 Query: 363 VYDRDTGRSRGFGFVTMASQEELD 292 + D+DTG+SRGFGFVT S + +D Sbjct: 275 MLDKDTGQSRGFGFVTYDSADAVD 298 Score = 55.1 bits (131), Expect = 2e-07 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Frame = -2 Query: 489 ERPPRD-SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 ER D S S ++++G L W + L E F ++G V D +++ D TGRSRGFGF++ Sbjct: 148 ERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207 Query: 312 ASQEELDDAIAA---LDGQ 265 +D+ + LDG+ Sbjct: 208 EKPSSVDEVVKTQHILDGK 226
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 56.2 bits (134), Expect = 7e-08 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Frame = -2 Query: 543 VNGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVV 376 V+G + AAP + + P ++ + R++V N+P++ D L ++F + GK++ Sbjct: 85 VSGTATQADDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 144 Query: 375 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 D ++++ S+GFGFVT + + D A L G GR + VN A Sbjct: 145 DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 56.2 bits (134), Expect = 7e-08 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 SG++ I+VG+L V +S+L ELF + + A++V+D+ TG S+G+GFV + +E Sbjct: 159 SGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218 Query: 294 DDAIAALDGQSXXGRALRV 238 A++ + G GRA++V Sbjct: 219 QLALSEMQGVFLNGRAIKV 237
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 55.8 bits (133), Expect = 9e-08 Identities = 38/120 (31%), Positives = 62/120 (51%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 +K+E+ E+ RY+ N + +AA D S +YV NL + D +L Sbjct: 292 KKSERETELRVRYEQN-----LKEAA-----------DKFQSSNLYVKNLDPSISDEKLK 335 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 E+FS G V ++V+ D + G S+G GFV A+ EE +A++ L G+ + L V +A+ Sbjct: 336 EIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394 Score = 54.3 bits (129), Expect = 3e-07 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 4/125 (3%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSS----FRIYVGNLPWQVDD 418 E A+KA+E +NG LL +K G + R RDS ++ +YV NL D Sbjct: 175 ESAQKAIEK-----LNGMLLN-DKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTD 228 Query: 417 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 L F E+GK+ A V+ D + G+S+GFGFV + ++ A+ +L+G + V Sbjct: 229 DDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287 Query: 237 NVAEE 223 A++ Sbjct: 288 GRAQK 292 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/70 (37%), Positives = 40/70 (57%) Frame = -2 Query: 477 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 298 R SG+ I++ NL +D L + FS G +V +V D +G+S+G+GFV A++E Sbjct: 119 RRSGAG-NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEES 176 Query: 297 LDDAIAALDG 268 AI L+G Sbjct: 177 AQKAIEKLNG 186
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 55.8 bits (133), Expect = 9e-08 Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Frame = -2 Query: 564 EMFHRYDVNGRLLTVNKAAPRGA--RVERPPRDSGSSFRI----YVGNLPWQVDDSRLVE 403 E H DV +N+ G RV R +D G + I +VGNL VD+ L + Sbjct: 58 EFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYD 117 Query: 402 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 FS G++V A V + GRS+G+GFV+ S E D AI A++ Q + + V+ A Sbjct: 118 TFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA 175 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/84 (33%), Positives = 42/84 (50%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D IY+GNL +V DS L EL + G VV+ + DR GFGF ++++ Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65 Query: 294 DDAIAALDGQSXXGRALRVNVAEE 223 + A L+ G+ +RVN A + Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQ 89
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 55.1 bits (131), Expect = 2e-07 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Frame = -2 Query: 540 NGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVVD 373 NG L T A G + + ++ S R++V N+P++ D L ++F + GK++D Sbjct: 90 NGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 149 Query: 372 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 ++++ S+GFGFVT + + D A L G GR + VN A Sbjct: 150 VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 195
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 300 ELDDAIAA 277 E+D +++A Sbjct: 80 EVDASMSA 87 Score = 42.7 bits (99), Expect = 8e-04 Identities = 26/106 (24%), Positives = 51/106 (48%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S +E+ + ++ + V+GR++ +A R P + +I+VG + + Sbjct: 74 TYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKEDTE 130 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 131 EYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 54.3 bits (129), Expect = 3e-07 Identities = 36/123 (29%), Positives = 62/123 (50%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ E A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 530 ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 585 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ G + ++ Sbjct: 586 TLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 642 Query: 234 VAE 226 A+ Sbjct: 643 WAK 645 Score = 46.6 bits (109), Expect = 5e-05 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRD---SGSSFRIYVGNLPWQVDDSRL 409 AEK +E +++GR +++ +G R ER ++ SG S + + NL + + L Sbjct: 442 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETL 501 Query: 408 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 E+F + + V G+S+G+ F+ AS E+ +A+ + + GR +R+ + Sbjct: 502 QEVFEKATFI----KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 556
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 54.3 bits (129), Expect = 3e-07 Identities = 24/73 (32%), Positives = 46/73 (63%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I+VG LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 273 DGQSXXGRALRVN 235 +G GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 54.3 bits (129), Expect = 3e-07 Identities = 36/123 (29%), Positives = 62/123 (50%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ E A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 533 ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 588 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ G + ++ Sbjct: 589 TLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 645 Query: 234 VAE 226 A+ Sbjct: 646 WAK 648 Score = 45.8 bits (107), Expect = 9e-05 Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRD---SGSSFRIYVGNLPWQVDDSRL 409 AEK +E +++GR +++ +G R ER ++ SG S + + NL + + L Sbjct: 445 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETL 504 Query: 408 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 E+F + + V G+S+G+ F+ AS E+ +A+ + + GR +R+ + Sbjct: 505 QEVFEKATFI----KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 559 Score = 30.8 bits (68), Expect = 3.1 Identities = 27/114 (23%), Positives = 50/114 (43%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E EKA+E+ V G + + K R ++ R R + NL + + + L Sbjct: 361 EDLEKALELTG-LKVFGNEIKLEKPKGRDSKKVRAART------LLAKNLSFNITEDELK 413 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRAL 244 E+F + V+ R+V GRS+G ++ S+ + + + G GR++ Sbjct: 414 EVFED---AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 462
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 300 ELDDAIAA 277 E+D +++A Sbjct: 80 EVDASMSA 87 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/106 (25%), Positives = 52/106 (49%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S +E+ + ++ + V+GR++ +A R P + +I+VG + + Sbjct: 74 TYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKEDTE 130 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 131 EYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 53.9 bits (128), Expect = 3e-07 Identities = 36/123 (29%), Positives = 62/123 (50%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ E A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 531 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 586 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ G + ++ Sbjct: 587 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 643 Query: 234 VAE 226 A+ Sbjct: 644 WAK 646 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQVDDSR 412 AEK E +++GR +++ +G + + SG S + + NL + + Sbjct: 442 AEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 501 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E+F + + V G+S+G+ F+ AS E+ +A+ + + + GRA+R+ + Sbjct: 502 LQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 557 Score = 35.0 bits (79), Expect = 0.17 Identities = 27/93 (29%), Positives = 44/93 (47%) Frame = -2 Query: 516 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 337 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 288 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 346 Query: 336 RGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 R FG+V S E+L+ A+ L G G +++ Sbjct: 347 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 378 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/114 (22%), Positives = 51/114 (44%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E EKA+E+ V G + + K + ++ ER R + NLP++V L Sbjct: 358 EDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPYKVTQDELK 410 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRAL 244 E+F + ++ R+V G+S+G ++ ++ + + G GR++ Sbjct: 411 EVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 459
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 53.9 bits (128), Expect = 3e-07 Identities = 26/78 (33%), Positives = 47/78 (60%) Frame = -2 Query: 468 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 289 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 399 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 458 Query: 288 AIAALDGQSXXGRALRVN 235 AI AL+G + R L+V+ Sbjct: 459 AIRALNGYTMGNRVLQVS 476
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 53.9 bits (128), Expect = 3e-07 Identities = 36/123 (29%), Positives = 62/123 (50%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ E A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 530 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 585 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ G + ++ Sbjct: 586 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 642 Query: 234 VAE 226 A+ Sbjct: 643 WAK 645 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQVDDSR 412 AEK E +++GR +++ +G + + SG S + + NL + + Sbjct: 441 AEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 500 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E+F + + V G+S+G+ F+ AS E+ +A+ + + + GRA+R+ + Sbjct: 501 LQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 556 Score = 35.0 bits (79), Expect = 0.17 Identities = 27/93 (29%), Positives = 44/93 (47%) Frame = -2 Query: 516 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 337 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 287 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 345 Query: 336 RGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 R FG+V S E+L+ A+ L G G +++ Sbjct: 346 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 377 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/114 (22%), Positives = 51/114 (44%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E EKA+E+ V G + + K + ++ ER R + NLP++V L Sbjct: 357 EDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPYKVTQDELK 409 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRAL 244 E+F + ++ R+V G+S+G ++ ++ + + G GR++ Sbjct: 410 EVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 458
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 53.9 bits (128), Expect = 3e-07 Identities = 26/78 (33%), Positives = 47/78 (60%) Frame = -2 Query: 468 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 289 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 435 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 494 Query: 288 AIAALDGQSXXGRALRVN 235 AI AL+G + R L+V+ Sbjct: 495 AIRALNGYTMGNRVLQVS 512
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 53.9 bits (128), Expect = 3e-07 Identities = 36/123 (29%), Positives = 62/123 (50%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ E A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 532 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 587 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ G + ++ Sbjct: 588 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 644 Query: 234 VAE 226 A+ Sbjct: 645 WAK 647 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQVDDSR 412 AEK E +++GR +++ +G + + SG S + + NL + + Sbjct: 443 AEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEET 502 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 L E+F + + V G+S+G+ F+ AS E+ +A+ + + + GRA+R+ + Sbjct: 503 LQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 558 Score = 35.0 bits (79), Expect = 0.17 Identities = 27/93 (29%), Positives = 44/93 (47%) Frame = -2 Query: 516 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 337 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 289 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 347 Query: 336 RGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 R FG+V S E+L+ A+ L G G +++ Sbjct: 348 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 379 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/114 (22%), Positives = 51/114 (44%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E EKA+E+ V G + + K + ++ ER R + NLP++V L Sbjct: 359 EDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPYKVTQDELK 411 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRAL 244 E+F + ++ R+V G+S+G ++ ++ + + G GR++ Sbjct: 412 EVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSI 460
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 53.5 bits (127), Expect = 4e-07 Identities = 26/72 (36%), Positives = 43/72 (59%) Frame = -2 Query: 492 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 313 +ER R+ ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69 Query: 312 ASQEELDDAIAA 277 +S E+D A+AA Sbjct: 70 SSMAEVDAAMAA 81 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/106 (24%), Positives = 54/106 (50%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S++ + + A+ + ++GR++ +A R P + +++VG + + Sbjct: 68 TFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTE 124 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 125 EHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 53.5 bits (127), Expect = 4e-07 Identities = 33/84 (39%), Positives = 48/84 (57%) Frame = -2 Query: 489 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 310 E RD S ++VGNLP++VD+S L E F + G +V R+V + TG RGFG+V Sbjct: 278 ETASRDKRS---VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 334 Query: 309 SQEELDDAIAALDGQSXXGRALRV 238 + + + A+ L+ GR LRV Sbjct: 335 NTDAVHLAL-KLNNSELMGRKLRV 357
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 53.1 bits (126), Expect = 6e-07 Identities = 32/84 (38%), Positives = 48/84 (57%) Frame = -2 Query: 489 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 310 E RD S ++VGNLP++++DS L E F + G +V R+V + TG RGFG+V Sbjct: 284 ETASRDKRS---VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 340 Query: 309 SQEELDDAIAALDGQSXXGRALRV 238 + + + A+ L+ GR LRV Sbjct: 341 NTDAVHLAL-KLNNSELMGRKLRV 363
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 53.1 bits (126), Expect = 6e-07 Identities = 23/73 (31%), Positives = 46/73 (63%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++G LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 273 DGQSXXGRALRVN 235 +G GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 52.8 bits (125), Expect = 8e-07 Identities = 26/81 (32%), Positives = 41/81 (50%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 PR ++YVGNLP V + + ++F ++G++ D +GR F FV Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHR 57 Query: 300 ELDDAIAALDGQSXXGRALRV 238 + +DA+ A DG GR +RV Sbjct: 58 DAEDAVRARDGYEFDGRRIRV 78
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/96 (31%), Positives = 48/96 (50%) Frame = -2 Query: 510 APRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRG 331 AP A V+ + S R++V NL ++ +S L +FS GK+ + V +D S+G Sbjct: 278 APTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKG 337 Query: 330 FGFVTMASQEELDDAIAALDGQSXXGRALRVNVAEE 223 F +V A + +A LDG+ GR L + A + Sbjct: 338 FAYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQ 373 Score = 46.6 bits (109), Expect = 5e-05 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRG--ARVERPPRDSGSSF-----RIYVGNLP 433 T +A+ A+ + + Y ++ L V +A+ +G A ER D+ +I + NLP Sbjct: 647 TKAQAQAALAVMNGYTLDRHTLVV-RASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLP 705 Query: 432 WQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXG 253 +Q + LF +G++ RV D +RGFGF S E ++A+ AL G Sbjct: 706 FQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKNTHLLG 764 Query: 252 RALRVNVAEE 223 R L + A E Sbjct: 765 RRLVLEFANE 774
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 52.4 bits (124), Expect = 1e-06 Identities = 33/85 (38%), Positives = 47/85 (55%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P S F +VGNL + + ++ L + F E V R+V D T RSRGFG+V + + Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETAD 144 Query: 300 ELDDAIAALDGQSXXGRALRVNVAE 226 L A+ AL G+ GR +R+ VAE Sbjct: 145 TLSAAL-ALSGEDLMGRPVRITVAE 168
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/68 (38%), Positives = 41/68 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 66 EVDAAMNA 73 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/106 (25%), Positives = 55/106 (51%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T +T+E+ + A+ + V+GR++ +A R + P + +I+VG + + Sbjct: 60 TYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTE 116 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 117 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 52.4 bits (124), Expect = 1e-06 Identities = 23/86 (26%), Positives = 51/86 (59%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 370 + ++GR + PR +++P + G +++++G LP V ++ L F+ +GKV + Sbjct: 70 HTLDGRTIDPKPCNPR--TLQKPKK--GGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEV 125 Query: 369 RVVYDRDTGRSRGFGFVTMASQEELD 292 ++YD++ +SRGFGF++ + ++ Sbjct: 126 VIMYDQEKKKSRGFGFLSFEEESSVE 151 Score = 50.1 bits (118), Expect = 5e-06 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 280 +++VG L W+ L F G ++D V+ + ++GRSRGFGFVT A ++ + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 279 ---ALDGQS 262 LDG++ Sbjct: 68 GPHTLDGRT 76
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/68 (38%), Positives = 41/68 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 66 EVDAAMNA 73 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/106 (25%), Positives = 55/106 (51%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T +T+E+ + A+ + V+GR++ +A R + P + +I+VG + + Sbjct: 60 TYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTE 116 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 117 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/68 (38%), Positives = 41/68 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 66 EVDAAMNA 73 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/106 (25%), Positives = 55/106 (51%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T +T+E+ + A+ + V+GR++ +A R + P + +I+VG + + Sbjct: 60 TYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTE 116 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 117 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/107 (28%), Positives = 52/107 (48%) Frame = -2 Query: 546 DVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDAR 367 D N ++K P+ A P ++V + ++ + L ++FS+ G V R Sbjct: 76 DPNNESTALDKKEPQSA----PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131 Query: 366 VVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 ++ + T SRGFGF++ ++ EE AI L+ Q GR L V A+ Sbjct: 132 IMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/68 (38%), Positives = 40/68 (58%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 88 EVDAAMCA 95 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/106 (27%), Positives = 55/106 (51%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S +E+ + A+ + V+GR++ +A R V+ P + +I+VG + + Sbjct: 82 TYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTE 138 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/68 (38%), Positives = 40/68 (58%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 88 EVDAAMCA 95 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/106 (27%), Positives = 55/106 (51%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S +E+ + A+ + V+GR++ +A R V+ P + +I+VG + + Sbjct: 82 TYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTE 138 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/68 (38%), Positives = 41/68 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 66 EVDAAMNA 73 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/106 (25%), Positives = 55/106 (51%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T +T+E+ + A+ + V+GR++ +A R + P + +I+VG + + Sbjct: 60 TYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTE 116 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 117 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/121 (23%), Positives = 55/121 (45%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 ++VGN+P+ V + ++ E+F++ G V ++V D +TG +G+GF E A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 273 DGQSXXGRALRVNVAEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIIILPSILV 94 + R +RV Y R + H+S+ ++ P ++ + + Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVLHSTSSL 128 Query: 93 P 91 P Sbjct: 129 P 129
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/76 (34%), Positives = 41/76 (53%) Frame = -2 Query: 519 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 340 + ++PR + R+ +++++G L W L + FS+ G+VVD + D TGR Sbjct: 80 SNSSPRHSEAATAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 339 SRGFGFVTMASQEELD 292 SRGFGFV E +D Sbjct: 137 SRGFGFVLFKESESVD 152 Score = 36.6 bits (83), Expect = 0.057 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E +K ++ + +NG+++ +A + + + P + +I+VG L + ++ Sbjct: 149 ESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIR 199 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 E F G+V + D T + RGF F+T +E Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/68 (38%), Positives = 40/68 (58%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 88 EVDAAMCA 95 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/106 (27%), Positives = 55/106 (51%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S +E+ + A+ + V+GR++ +A R V+ P + +I+VG + + Sbjct: 82 TYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKEDTE 138 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 139 EYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/77 (36%), Positives = 47/77 (61%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 FR++VGNL V+D L + FSE+ +V +VV DR+ G++RGFGFV+ ++ A Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWR 88 Query: 279 ALDGQSXXGRALRVNVA 229 +G+ R ++++ A Sbjct: 89 EKNGKYIGSRPVKLSRA 105
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 52.4 bits (124), Expect = 1e-06 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 10/130 (7%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 436 E A AVE + + +L V +A + R E R + +Y+ NL Sbjct: 276 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 335 Query: 435 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 V+D +L E+FSE+G V +V+ + G SRGFGFV ++ EE A+ ++G+ Sbjct: 336 DDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIG 394 Query: 255 GRALRVNVAE 226 + L V +A+ Sbjct: 395 RKPLYVALAQ 404 Score = 50.8 bits (120), Expect = 3e-06 Identities = 35/121 (28%), Positives = 57/121 (47%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E A+ A++ + +N + + V R R S +YV NLP ++ D L Sbjct: 183 ETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELK 242 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 + F ++G + A V+ D+ +G SR FGFV S E A+ ++G S L V A+ Sbjct: 243 KTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 301 Query: 225 E 223 + Sbjct: 302 K 302 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/62 (35%), Positives = 34/62 (54%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +++ NL +D+ L E FS G ++ +V D GRS+G+GFV +E AI L Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 273 DG 268 +G Sbjct: 193 NG 194 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/99 (29%), Positives = 51/99 (51%) Frame = -2 Query: 534 RLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD 355 ++ V AA ++ P S +YVG+L V++S L++LF++ V + RV D Sbjct: 25 QVAAVAAAAAAAEALQTHPNSS-----LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD 79 Query: 354 RDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 T RS G+ +V A+ E+ A+ +L+ R +R+ Sbjct: 80 L-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRI 117
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP-RDSGSSFRIYVGNLPWQVDDS 415 T E+A A+ + ++G L + + +G + SG S +I + NLP++ Sbjct: 672 TKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRK 731 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L+ELF G++ RV D +RGF FV +E + A++ L+G GR L + Sbjct: 732 DLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQ 790 Query: 234 VAEE 223 AE+ Sbjct: 791 YAEQ 794 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/78 (28%), Positives = 43/78 (55%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R+++ N+ ++ + LFS++G + + + D TG+S+GF +V +E+ A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 276 LDGQSXXGRALRVNVAEE 223 LD Q GR L + A++ Sbjct: 371 LDKQIFQGRLLHILPADK 388 Score = 35.0 bits (79), Expect = 0.17 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Frame = -2 Query: 468 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD---TGR--SRGFGFVTMASQ 304 G + ++V NL + L +LF V A V D +G+ S GFGFV ++ Sbjct: 614 GPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTK 673 Query: 303 EELDDAIAALDGQSXXGRALRVNVAEE 223 E+ + AI+ LDG G L++ ++ + Sbjct: 674 EQANVAISTLDGHVLDGHKLQLKLSHK 700
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = -2 Query: 519 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 340 + ++PR R+ +++++G L W L + FS+ G+VVD + D TGR Sbjct: 80 SNSSPRHTEAAAAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 339 SRGFGFVTMASQEELD 292 SRGFGFV E +D Sbjct: 137 SRGFGFVLFKESESVD 152 Score = 36.6 bits (83), Expect = 0.057 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E +K ++ + +NG+++ +A + + + P + +I+VG L + ++ Sbjct: 149 ESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIR 199 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 E F G+V + D T + RGF F+T +E Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/89 (32%), Positives = 43/89 (48%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +YVG L +VDD L F G + D ++ D +T + RGF FV E+ AI + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 273 DGQSXXGRALRVNVAEEXXXXXXXXRYIW 187 + GR +RVN+A+ R +W Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVW 96
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/89 (32%), Positives = 43/89 (48%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +YVG L +VDD L F G + D ++ D +T + RGF FV E+ AI + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 273 DGQSXXGRALRVNVAEEXXXXXXXXRYIW 187 + GR +RVN+A+ R +W Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVW 96
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/84 (34%), Positives = 49/84 (58%) Frame = -2 Query: 489 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 310 E RD S ++VGNLP++V++S + + F + G ++ R+V D+ TG +GFG+V Sbjct: 280 ETSSRDKRS---VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFE 336 Query: 309 SQEELDDAIAALDGQSXXGRALRV 238 + + + A+ L+ GR LRV Sbjct: 337 NTDSVHLAL-KLNNSELMGRKLRV 359
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/68 (36%), Positives = 40/68 (58%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P + ++++G L ++ D L E F + G + D V+ D ++ RSRGFGFVT S + Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66 Query: 300 ELDDAIAA 277 E+D A+ A Sbjct: 67 EVDAAMTA 74 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/89 (26%), Positives = 45/89 (50%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 370 + V+GR++ +A R P + +I+VG + ++ L E F ++GK+ Sbjct: 77 HKVDGRVVEPKRAVSR--EDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVI 134 Query: 369 RVVYDRDTGRSRGFGFVTMASQEELDDAI 283 ++ DR +G+ RGF FVT + +D + Sbjct: 135 EIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/104 (26%), Positives = 54/104 (51%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 S I++A+K+ + ++GR++ +A PR + P + +++VG L D+ Sbjct: 83 SMIDEAQKS----RPHKIDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDDHDEQ 136 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + + F G +VD +V D++TG+ RGF FV + +D + Sbjct: 137 SIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV 180 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/57 (36%), Positives = 34/57 (59%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 ++++G L ++ D L F + G +VD V+ D T RSRGFGF+T + +D+A Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA 88
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/105 (29%), Positives = 53/105 (50%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S +E+A+ A+ + V+G + + +A R P +++VG L V Sbjct: 54 TYSNVEEADAAMAA-SPHAVDGNTVELKRAVSREDSAR--PGAHAKVKKLFVGGLKGDVA 110 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 + L+E FS+ G V A ++ D+ +G+ RGFGFV + + D A Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/60 (41%), Positives = 35/60 (58%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L Q +S L F G + D VV + T RSR FGFVT ++ EE D A+AA Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVD 373 + V+GR++ +A PR + RP ++G++ + ++VG + +++++ L + F ++G VV Sbjct: 80 HKVDGRVVEPKRAVPR-TEIGRP--EAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVS 136 Query: 372 ARVVYDRDTGRSRGFGFVTMASQEELD 292 A +V D++T + RGF FV + +D Sbjct: 137 AAIVVDKETRKKRGFAFVEFDDYDPVD 163 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/57 (38%), Positives = 36/57 (63%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 ++++G L ++ D L + F + G++VD V+ D T RSRGFGF+T + +DDA Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA 74
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 51.2 bits (121), Expect = 2e-06 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 40/161 (24%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR---------------- 454 E +KA+E ++YD++GR L + K P G R + +G+SF+ Sbjct: 143 EFVKKALETMNKYDLSGRPLNI-KEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPP 201 Query: 453 ------------------------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 346 I+V NL ++V +L E+FS G V A + D+D Sbjct: 202 SILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD- 260 Query: 345 GRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAEE 223 G+SRG G VT E AI+ +GQ R + V + ++ Sbjct: 261 GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDK 301 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRI 572 Query: 276 LDGQSXXGRALRVNV 232 ++G GR + V + Sbjct: 573 MNGIKISGREIDVRL 587 Score = 33.9 bits (76), Expect = 0.37 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEH-GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 R+++ N+P+ + + +L E G+V + D + G+SRG G V +E + A+ Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 150 Query: 279 ALDGQSXXGRALRV 238 ++ GR L + Sbjct: 151 TMNKYDLSGRPLNI 164
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/76 (34%), Positives = 39/76 (51%) Frame = -2 Query: 519 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 340 + ++PR R+ +++++G L W L + FS+ G VVD + D TGR Sbjct: 78 SNSSPRHTEAATAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134 Query: 339 SRGFGFVTMASQEELD 292 SRGFGFV E +D Sbjct: 135 SRGFGFVLFKESESVD 150 Score = 36.6 bits (83), Expect = 0.057 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 E +K ++ + +NG+++ +A + + + P + +I+VG L + ++ Sbjct: 147 ESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIR 197 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 E F G+V + D T + RGF F+T +E Sbjct: 198 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 51.2 bits (121), Expect = 2e-06 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Frame = -2 Query: 516 KAAPRGA-RVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 340 + APR + D+G +++VG L W L + F++ G+VVD + D +TGR Sbjct: 51 RTAPRDQINASKNEEDAG---KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR 107 Query: 339 SRGFGFVTM---ASQEE-LDDAIAALDGQ 265 SRGFGF+ AS E+ LD LDG+ Sbjct: 108 SRGFGFILFKDAASVEKVLDQKEHRLDGR 136 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 456 RIYVGNL-PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 +I+VG L P + ++ E F E G++ + D + RGF F+T +E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 205
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/68 (36%), Positives = 41/68 (60%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 300 ELDDAIAA 277 ++D A+ A Sbjct: 66 KVDAAMNA 73 Score = 49.3 bits (116), Expect = 8e-06 Identities = 28/106 (26%), Positives = 54/106 (50%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T +T+EK + A+ + V+GR++ +A R + P + +I+VG + + Sbjct: 60 TYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTE 116 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F ++GK+ ++ DR +G+ RGF FVT +D + Sbjct: 117 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVD 373 + ++GR + +A PR ++ P ++G++ + ++VG L D+ L E F + G++V Sbjct: 87 HKIDGRTVEPKRAVPR-QEIDSP--NAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVS 143 Query: 372 ARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 +V D+DTG+ RGF F+ + +D I Sbjct: 144 VNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173 Score = 46.2 bits (108), Expect = 7e-05 Identities = 21/57 (36%), Positives = 34/57 (59%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 ++++G L ++ D L F + G +VD V+ D T RSRGFGF+T + +D+A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 IYV N+ V + L + FS+ G + +++ D + G+S+GFGFV ++ EE DA+ Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 273 DGQSXXGRALRVNVAEE 223 GQ G+ L V +A++ Sbjct: 365 HGQMFHGKPLYVAIAQK 381 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/105 (27%), Positives = 51/105 (48%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 + A A+E + +NG+++ V + V P ++V NLP V ++ L Sbjct: 76 QDANLAIEKKNNSLLNGKMIRVMWS------VRAPDARRNGVGNVFVKNLPESVTNAVLQ 129 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD 271 ++F + G +V +V D G+SRG+GFV ++ AI L+ Sbjct: 130 DMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLN 173 Score = 38.5 bits (88), Expect = 0.015 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +YVG+L V + L + F+E + R+ D +GRS +G+ S+++ + AI Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 273 DGQSXXGRALRV 238 + G+ +RV Sbjct: 86 NNSLLNGKMIRV 97 Score = 37.7 bits (86), Expect = 0.026 Identities = 30/121 (24%), Positives = 56/121 (46%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 406 + A A++ + V + + V K + RV+ P + ++ +Y+ NL V + L Sbjct: 163 DAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVK--PEEKYTN--LYMKNLDADVSEDLLR 218 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 E F+E GK+V + D + RG+ FV + E+ A ++G + L V A+ Sbjct: 219 EKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277 Query: 225 E 223 + Sbjct: 278 K 278
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/100 (30%), Positives = 50/100 (50%) Frame = -2 Query: 525 TVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 346 T+ + V + D ++V ++P V D +L + FS + A VV D + Sbjct: 4 TIENVEVPSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK 63 Query: 345 GRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 RSRGFGFV+ A +++ +A+A G LRV++A+ Sbjct: 64 -RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAK 102
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/73 (34%), Positives = 43/73 (58%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 IY+GNL ++ + ++ +FSE+G VD + D +TG S+GF ++ Q A+ L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 273 DGQSXXGRALRVN 235 +G GRAL+++ Sbjct: 93 NGFKIGGRALKID 105
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R+++ N+ + + +LFS +G++ + V D TG S+GF +V A EE A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 276 LDGQSXXGRALRVNVAEE 223 LD Q GR L + A+E Sbjct: 386 LDKQIFQGRLLHILAADE 403 Score = 42.7 bits (99), Expect = 8e-04 Identities = 32/123 (26%), Positives = 55/123 (44%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T E+A + ++G + + K + R + + +I V NLP++ Sbjct: 695 TKEQATAVISAMDGTVIDGHKIQL-KLSHRQGNAGSQEKKKAKNGKIIVKNLPFEATRKD 753 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 + ELF+ G++ RV D +RGF FV +E ++A+ L G GR L + Sbjct: 754 VFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQP 812 Query: 231 AEE 223 AE+ Sbjct: 813 AEQ 815 Score = 35.4 bits (80), Expect = 0.13 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Frame = -2 Query: 468 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 304 G + I++ NL ++ +L + F V A+V D + S GFGFV ++ Sbjct: 637 GPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTK 696 Query: 303 EELDDAIAALDGQSXXGRALRVNVA 229 E+ I+A+DG G +++ ++ Sbjct: 697 EQATAVISAMDGTVIDGHKIQLKLS 721 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 11/88 (12%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEH-----------GKVVDARVVYDRDTGRSRGFGFVTMA 310 R+ V LP + + L + F++ G + D R++ +R+ G+SR F F+ Sbjct: 3 RVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNRE-GKSRRFAFIGYK 61 Query: 309 SQEELDDAIAALDGQSXXGRALRVNVAE 226 ++++ DA+ DG + V++A+ Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMAK 89
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 50.8 bits (120), Expect = 3e-06 Identities = 22/78 (28%), Positives = 48/78 (61%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L + ++ L +F +HG + + ++ DR T +SRGF F+T + + +A Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 276 LDGQSXXGRALRVNVAEE 223 ++G+S G+A++V A++ Sbjct: 68 MNGKSLHGKAIKVEQAKK 85
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 50.4 bits (119), Expect = 4e-06 Identities = 26/106 (24%), Positives = 54/106 (50%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S + + + A+ + ++GR++ +A R + P + +++VG + + Sbjct: 56 TFSCMNEVDAAMSA-RPHTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKEDTE 112 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L E F E+GK+ ++ D+ +G+ RGFGFVT + +D + Sbjct: 113 EHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 46.2 bits (108), Expect = 7e-05 Identities = 20/60 (33%), Positives = 37/60 (61%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L ++ + L + + G++ D V+ D + RSRGFGFVT + E+D A++A Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFV----TMASQEELDD 289 +++VG L W L + F++ G+VVD + D +TGRSRGFGF+ + + ++ LD Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 288 AIAALDGQ 265 LDG+ Sbjct: 136 KEHRLDGR 143 Score = 32.3 bits (72), Expect = 1.1 Identities = 26/98 (26%), Positives = 46/98 (46%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 S++EK E HR D GR++ KA A + P + +I+VG L + + Sbjct: 127 SSVEKVLDQKE--HRLD--GRVIDPKKAM---AMKKDPVK------KIFVGGLNPEATEE 173 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 ++ E F + G++ + D + RGF F+T ++ Sbjct: 174 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEED 211
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 50.1 bits (118), Expect = 5e-06 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDV-------NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVG 442 T ST+E +A +Y N LLT G++ E P G++ IY Sbjct: 352 TGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGANLFIY-- 406 Query: 441 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 262 +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI +++G Sbjct: 407 HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 466 Query: 261 XXGRALRVNV 232 + L+V + Sbjct: 467 IGMKRLKVQL 476 Score = 34.7 bits (78), Expect = 0.22 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = -2 Query: 492 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFV 319 ++ P + + +++VG +P + L ELF ++G V + ++ DR +S+G FV Sbjct: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFV 64 Query: 318 TMASQEELDDAIAAL 274 T +++ +A AL Sbjct: 65 TFYTRKAALEAQNAL 79 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/61 (26%), Positives = 34/61 (55%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G + + ++ + +FS G++ + R++ D G SRG FVT ++ AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKA 167 Query: 276 L 274 + Sbjct: 168 M 168
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 50.1 bits (118), Expect = 5e-06 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 7/130 (5%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDV-------NGRLLTVNKAAPRGARVERPPRDSGSSFRIYVG 442 T ST+E +A +Y N LLT G++ E P G++ IY Sbjct: 352 TGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGANLFIY-- 406 Query: 441 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 262 +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI +++G Sbjct: 407 HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 466 Query: 261 XXGRALRVNV 232 + L+V + Sbjct: 467 IGMKRLKVQL 476 Score = 35.0 bits (79), Expect = 0.17 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = -2 Query: 492 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFV 319 ++ P + + +++VG +P + L ELF ++G V + V+ DR +S+G FV Sbjct: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64 Query: 318 TMASQEELDDAIAAL 274 T +++ +A AL Sbjct: 65 TFYTRKAALEAQNAL 79 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/61 (26%), Positives = 34/61 (55%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G + + ++ + +FS G++ + R++ D G SRG FVT ++ AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 167 Query: 276 L 274 + Sbjct: 168 M 168
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Frame = -2 Query: 543 VNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDAR 367 ++G+ + +A PR ER R++ S + ++VG L D+ L E F + G VV + Sbjct: 97 IDGKTVEAKRALPRP---ERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVK 153 Query: 366 VVYDRDTGRSRGFGFVTMASQEELDDAI 283 ++ D+ TG+ RGF FV + +D AI Sbjct: 154 LLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 ++++G L + L + + GKVVD V+ D T RSRGFGF+T +D A Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA 89
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/58 (41%), Positives = 36/58 (62%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 +I+VG L D + E +S+ G++ D V+ D T RSRGFGFVT + + E+D A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/87 (26%), Positives = 45/87 (51%) Frame = -2 Query: 543 VNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARV 364 ++G+ + +A PR + + S+ R+YV + + L E F+++G V + + Sbjct: 88 IDGKTVDPKRAVPRDDK--NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEI 145 Query: 363 VYDRDTGRSRGFGFVTMASQEELDDAI 283 + D+ T + RGFGFVT + +D + Sbjct: 146 ILDKATQKPRGFGFVTFDDHDSVDQCV 172
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/86 (29%), Positives = 47/86 (54%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 370 ++++ + + A PR A+ + R +I+VG L + + F + GKV DA Sbjct: 84 HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKVEDA 139 Query: 369 RVVYDRDTGRSRGFGFVTMASQEELD 292 +++D+ T R RGFGFVT +++ ++ Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVE 165
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/84 (32%), Positives = 45/84 (53%) Frame = -2 Query: 552 RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 373 R++++ + + A PR A+ + R +I+VG L + F + GKV D Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDD 137 Query: 372 ARVVYDRDTGRSRGFGFVTMASQE 301 A +++D+ T R RGFGFVT S++ Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESED 161
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/84 (32%), Positives = 45/84 (53%) Frame = -2 Query: 552 RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 373 R++++ + + A PR A+ + R +I+VG L + F + GKV D Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDD 137 Query: 372 ARVVYDRDTGRSRGFGFVTMASQE 301 A +++D+ T R RGFGFVT S++ Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESED 161
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/84 (32%), Positives = 46/84 (54%) Frame = -2 Query: 552 RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 373 R++++ + + A PR A+ + R +I+VG L + + F + GKV D Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKQYFEQFGKVDD 137 Query: 372 ARVVYDRDTGRSRGFGFVTMASQE 301 A +++D+ T R RGFGFVT S++ Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESED 161
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 50.1 bits (118), Expect = 5e-06 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 40/161 (24%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF----------------- 457 E +KA+E ++YD++GR L + K P G R + +G SF Sbjct: 152 EFVKKALETMNKYDLSGRPLNI-KEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPP 210 Query: 456 -----------------------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 346 I+V NL ++V +L E+FS G V A + D+D Sbjct: 211 SILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD- 269 Query: 345 GRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAEE 223 G+SRG G VT E AI+ +GQ R + V + ++ Sbjct: 270 GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDK 310 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRI 581 Query: 276 LDGQSXXGRALRVNV 232 ++G GR + V + Sbjct: 582 MNGIKISGREIDVRL 596 Score = 33.9 bits (76), Expect = 0.37 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEH-GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 R+++ N+P+ + + +L E G+V + D + G+SRG G V +E + A+ Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 159 Query: 279 ALDGQSXXGRALRV 238 ++ GR L + Sbjct: 160 TMNKYDLSGRPLNI 173
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 50.1 bits (118), Expect = 5e-06 Identities = 23/60 (38%), Positives = 38/60 (63%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT +S E+D A+AA Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/106 (24%), Positives = 54/106 (50%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T S++ + + A+ + ++GR++ +A R P + +++VG + + Sbjct: 56 TFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKEDTE 112 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 + L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 113 EHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 50.1 bits (118), Expect = 5e-06 Identities = 26/76 (34%), Positives = 42/76 (55%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R++V N+P++ D L +F + G V D ++++ S+GFGFVTM ++ + A Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 276 LDGQSXXGRALRVNVA 229 L G GR + VN A Sbjct: 212 LHGSMIEGRKIEVNCA 227
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = -2 Query: 462 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 S R++V NLP+ +S L +FS+ GK+ + V +D + S+GF +V + A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 282 AALDGQSXXGRALRV 238 LDG+ GR + + Sbjct: 360 KELDGKHFQGRLMHI 374 Score = 43.5 bits (101), Expect = 5e-04 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 6/129 (4%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTV---NKA---APRGARVERPPRDSGSSFRIYVGNLPW 430 T +A+ A+ Y ++ L V NKA A R + + + +I + NLP+ Sbjct: 652 TKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPF 711 Query: 429 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGR 250 Q + LF +G++ RV D +RGFGF S E ++A+ AL GR Sbjct: 712 QATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKNTHLLGR 770 Query: 249 ALRVNVAEE 223 L + A E Sbjct: 771 RLVLEFANE 779 Score = 37.0 bits (84), Expect = 0.044 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDD 289 ++V NL + + R E+F V AR+ D R S GFGFV ++ + Sbjct: 599 LFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQA 658 Query: 288 AIAALDGQSXXGRALRVNVAEE 223 A+AA+DG L V + + Sbjct: 659 ALAAMDGYKLDQHELVVRASNK 680
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 50.1 bits (118), Expect = 5e-06 Identities = 20/71 (28%), Positives = 42/71 (59%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +Y+G++P+ + ++++L S G V++ ++++D TGRS+G+ F+ E A+ L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 273 DGQSXXGRALR 241 +G R L+ Sbjct: 80 NGYQLGSRFLK 90
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 50.1 bits (118), Expect = 5e-06 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS-------SFRIYVGNLP 433 T E A KA++ ++++G+ L V K A RGA +R + G S ++ V NLP Sbjct: 590 TKEAATKALKALEGFEIDGKSLEV-KFAQRGAEDDRETKKGGDAEGGKTKSTKVLVKNLP 648 Query: 432 WQVDDSRLVELFSEHGKVVDARV---VYDRDTG--RSRGFGFVTMASQEELDDAIAALDG 268 ++ + ELFS +G++ R+ TG +RGF F+ + E A+ AL Sbjct: 649 FEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAARAMEALKH 708 Query: 267 QSXXGRALRVNVAEE 223 GR L + A E Sbjct: 709 THLLGRHLVLQWANE 723 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 Query: 339 SRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 S G+GFV ++E A+ AL+G G++L V A+ Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ 617
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/86 (29%), Positives = 47/86 (54%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 370 ++++ + + A PR A+ + R +I+VG L + + F + GKV DA Sbjct: 84 HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKVEDA 139 Query: 369 RVVYDRDTGRSRGFGFVTMASQEELD 292 +++D+ T R RGFGFVT +++ ++ Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVE 165
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/79 (34%), Positives = 41/79 (51%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D S R++V NLP+ + L +LFS++G + + D T + +GF F+T E Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456 Query: 294 DDAIAALDGQSXXGRALRV 238 A + +DGQ GR L V Sbjct: 457 VKAYSEVDGQVFQGRMLHV 475 Score = 48.9 bits (115), Expect = 1e-05 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 7/111 (6%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVN------KAAPRGARVERPPRDSGSSFRIYVGNLPWQV 424 E+A+KA++ + V+G L V K A AR ++ PR +S +I V N+P+Q Sbjct: 785 EQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS-KILVRNIPFQA 843 Query: 423 DDSRLVELFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIAAL 274 + ELFS G++ R+ TG RGFGFV ++++ A AL Sbjct: 844 HSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894 Score = 38.1 bits (87), Expect = 0.020 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 49.7 bits (117), Expect = 6e-06 Identities = 22/70 (31%), Positives = 41/70 (58%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D S+ +++VG++P + + F +HG V++ ++ D+ TG+ +G FV A+ ++ Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174 Query: 294 DDAIAALDGQ 265 D AI AL Q Sbjct: 175 DRAIRALHNQ 184 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/64 (37%), Positives = 40/64 (62%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 F+++VG+L Q + + E+F + G V D ++ D + +SRG GFV +S+E A+A Sbjct: 211 FKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKE---TAMA 266 Query: 279 ALDG 268 A+DG Sbjct: 267 AIDG 270
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 49.7 bits (117), Expect = 6e-06 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +++VG L W+ + L + F ++G++ V D TGRSRGF F+ + E +D AA Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116 Score = 42.0 bits (97), Expect = 0.001 Identities = 16/67 (23%), Positives = 35/67 (52%) Frame = -2 Query: 483 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 304 P + +I+VG L ++ D + F + G +V+ + +D+ + +GF F+T S+ Sbjct: 128 PKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSE 187 Query: 303 EELDDAI 283 + + D + Sbjct: 188 QVVTDLL 194
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRD--SGSSFRIYVGNLPWQVDD 418 T E A++A+ + ++ GR + + ++P + R + S ++V L + Sbjct: 507 TAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTE 566 Query: 417 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 L E F + AR+V DRDTG S+GFGFV +S E+ A A++ G + + Sbjct: 567 ETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTL 623 Query: 237 NVAE 226 + A+ Sbjct: 624 DFAK 627 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/118 (24%), Positives = 55/118 (46%) Frame = -2 Query: 591 TIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 412 T +AEKA+E +V+GR + ++ + + + S + V NL + + Sbjct: 417 TEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEET 476 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 L ELF K + + + GR +G+ FV + E+ +A+ + + GRA+R+ Sbjct: 477 LQELF----KKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530 Score = 36.6 bits (83), Expect = 0.057 Identities = 18/77 (23%), Positives = 41/77 (53%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 ++V NLP++V + + +F ++ R+V +++ G S+G ++ ++ E + A+ Sbjct: 373 LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 428 Query: 273 DGQSXXGRALRVNVAEE 223 G GRA+ ++ E Sbjct: 429 QGTEVDGRAMVIDYTGE 445
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 49.7 bits (117), Expect = 6e-06 Identities = 29/76 (38%), Positives = 43/76 (56%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G VT E AI+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262 Query: 273 DGQSXXGRALRVNVAE 226 +GQ R + V + E Sbjct: 263 NGQLLFDRPMHVKMDE 278 Score = 38.1 bits (87), Expect = 0.020 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 709 Query: 276 LDGQSXXGRALRVNV 232 ++G GR + V + Sbjct: 710 MNGMKLSGREIDVRI 724
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 49.3 bits (116), Expect = 8e-06 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 7/129 (5%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLT--VNKAAPRGAR----VERPPRDSGSSFRIYVGNLP 433 S+ AE+A+ ++ + G T +N A G + V R P F I+VG+L Sbjct: 136 SSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPE-----FSIFVGDLL 190 Query: 432 WQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXX 256 +DS L F S + A+++ D TG SR +GFV +S++E A+ + G Sbjct: 191 PTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQ 250 Query: 255 GRALRVNVA 229 GR LR++VA Sbjct: 251 GRPLRISVA 259
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 49.3 bits (116), Expect = 8e-06 Identities = 29/81 (35%), Positives = 42/81 (51%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 S SS +YVGNLP + + + +LFS++G VV + + R G+ FV + + Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAE 59 Query: 291 DAIAALDGQSXXGRALRVNVA 229 DAI DG G LRV +A Sbjct: 60 DAIHGRDGYDFDGHRLRVELA 80
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 49.3 bits (116), Expect = 8e-06 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 7/111 (6%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVN------KAAPRGARVERPPRDSGSSFRIYVGNLPWQV 424 E+A+KA++ + V+G L V K A R ++ P+ +S +I V N+P+Q Sbjct: 777 EQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS-KILVRNIPFQA 835 Query: 423 DDSRLVELFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIAAL 274 + + ELFS G++ R+ TG RGFGFV ++++ A AL Sbjct: 836 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886 Score = 49.3 bits (116), Expect = 8e-06 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%) Frame = -2 Query: 597 MSTIEKAEKAVEMFHRYDVNGRLLTV--NKAAP--RGARVERPP------------RDSG 466 +S+ E+ +KA++ Y + GR + V K AP RG P D Sbjct: 339 LSSEEEVKKALKCNRDY-MGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLA 397 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S R++V NL + + L +LFS +G + + D T + +GF FVT E A Sbjct: 398 DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 457 Query: 285 IAALDGQSXXGRALRV 238 A +DGQ GR L V Sbjct: 458 YAEVDGQVFQGRMLHV 473 Score = 38.5 bits (88), Expect = 0.015 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A+ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAAL 59
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 48.9 bits (115), Expect = 1e-05 Identities = 29/76 (38%), Positives = 43/76 (56%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G VT E AI+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263 Query: 273 DGQSXXGRALRVNVAE 226 +GQ R + V + E Sbjct: 264 NGQLLFDRPMHVKMDE 279 Score = 38.1 bits (87), Expect = 0.020 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 710 Query: 276 LDGQSXXGRALRVNV 232 ++G GR + V + Sbjct: 711 MNGMKLSGREIDVRI 725
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/76 (31%), Positives = 45/76 (59%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 RI+VG + ++ ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 276 LDGQSXXGRALRVNVA 229 + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/76 (31%), Positives = 45/76 (59%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 RI+VG + ++ ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 276 LDGQSXXGRALRVNVA 229 + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -2 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -2 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -2 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = -2 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G GR +RV+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = -2 Query: 411 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G GR +RV+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 48.5 bits (114), Expect = 1e-05 Identities = 29/82 (35%), Positives = 45/82 (54%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 SGS ++V L + L LFS++GKVV A+VV + + +R +GFVTM++ +E Sbjct: 403 SGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEAT 462 Query: 291 DAIAALDGQSXXGRALRVNVAE 226 I+ L GR + V A+ Sbjct: 463 KCISHLHRTELHGRMISVEKAK 484 Score = 32.7 bits (73), Expect = 0.82 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKA 511 TMST ++A K + HR +++GR+++V KA Sbjct: 454 TMSTSDEATKCISHLHRTELHGRMISVEKA 483
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%) Frame = -2 Query: 483 PPRDS-------GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 325 PP DS G ++VG +P + + LV LF + G + D R++ D +G++RG+ Sbjct: 150 PPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYA 209 Query: 324 FVTMASQEELDDAIAALD 271 F+T +E +A+ D Sbjct: 210 FITFCGKEAAQEAVKLCD 227
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/92 (28%), Positives = 44/92 (47%) Frame = -2 Query: 501 GARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 322 G R D + + NL +Q + L F +G + D + D+ + +S+GFGF Sbjct: 5 GGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64 Query: 321 VTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 V + + + A+ DG+ GR LRV +A+ Sbjct: 65 VRFYERRDAEHALDRTDGKLVDGRELRVTLAK 96
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 IYVG L +V + L F G + D ++ D ++ R RGF F+ E+ +DA AA+ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFI---EYEQSEDAAAAI 64 Query: 273 DGQSXX---GRALRVNVAEEXXXXXXXXRYIW 187 D + GR +RVN+A+ + IW Sbjct: 65 DNMNDSELCGRTIRVNLAKPVRVKEDSFKPIW 96
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Frame = -2 Query: 531 LLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELF-SEHGKVVDARVVYD 355 L +N A+ G R + + S + I+VG+L V++ + LF S + A+++ D Sbjct: 164 LFKLNWASGGGLREKSISK--ASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTD 221 Query: 354 RDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 T SRG+GFV + + A+A + GQ R +RV +A Sbjct: 222 PQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 47.4 bits (111), Expect = 3e-05 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Frame = -2 Query: 477 RDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 R S SS R ++V L + L LFS+HGKV+ A+VV + + +R +GFVTM++ + Sbjct: 444 RASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSD 503 Query: 300 ELDDAIAALDGQSXXGRALRVNVAE 226 E I+ L GR + V A+ Sbjct: 504 EATKCISHLHRTELHGRMISVEKAK 528 Score = 32.7 bits (73), Expect = 0.82 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKA 511 TMST ++A K + HR +++GR+++V KA Sbjct: 498 TMSTSDEATKCISHLHRTELHGRMISVEKA 527
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 47.4 bits (111), Expect = 3e-05 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 2/125 (1%) Frame = -2 Query: 597 MSTIEKAEKAVEMFHRYDVNGRLLTV--NKAAPRGARVERPPRDSGSSFRIYVGNLPWQV 424 M + +A++A++ H Y +NG + V +K P+ +S +++VGN+ Sbjct: 42 MDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPK------------TSTKLHVGNISSSC 89 Query: 423 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRAL 244 + L F E+G VV+ +V D + FV M E+ +AI+ LD + G+ + Sbjct: 90 TNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEAISGLDNTAFQGKLM 141 Query: 243 RVNVA 229 V ++ Sbjct: 142 SVKLS 146 Score = 43.1 bits (100), Expect = 6e-04 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I+VGNL + LFS++GK+ + +V + FGFV M S+ E D+AI Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G A+ V +++ Sbjct: 55 LHHYMLNGMAMNVEMSK 71
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/79 (32%), Positives = 45/79 (56%) Frame = -2 Query: 507 PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGF 328 P G +++R D + V NLP ++++ L +LF + G+V+ + D+ TG +GF Sbjct: 163 PDGRQIDRNRSDENTC---RVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGF 219 Query: 327 GFVTMASQEELDDAIAALD 271 FVT S+++ AIA L+ Sbjct: 220 AFVTFESRDDAARAIAELN 238
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 47.4 bits (111), Expect = 3e-05 Identities = 34/123 (27%), Positives = 60/123 (48%) Frame = -2 Query: 597 MSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDD 418 M T ++ A++ + Y +N + V A R A + + +I+VGNL + Sbjct: 47 METEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRA-------PNTPTTKIFVGNLTDKTRA 99 Query: 417 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 + ELF ++G VV+ +V R +GFV + ++ DAI L+G+ G+ L+V Sbjct: 100 PEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151 Query: 237 NVA 229 V+ Sbjct: 152 QVS 154 Score = 43.1 bits (100), Expect = 6e-04 Identities = 24/79 (30%), Positives = 45/79 (56%) Frame = -2 Query: 462 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 +F++++GNL + + L LF ++G VV+ VV + +GFV M ++++ DAI Sbjct: 6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAI 57 Query: 282 AALDGQSXXGRALRVNVAE 226 L+G + A++V A+ Sbjct: 58 QNLNGYTLNEFAIKVEAAK 76
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/76 (28%), Positives = 45/76 (59%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 RI+VG + ++ +++ L + FS++G V + ++V DR G S+G+GF+T +QE+ + Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 276 LDGQSXXGRALRVNVA 229 + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 47.4 bits (111), Expect = 3e-05 Identities = 30/123 (24%), Positives = 58/123 (47%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 S ++A KA+E ++ GR + V+ + G S + V NL + + Sbjct: 369 SNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATED 428 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E+F K R+ ++ GR++GF F+ +S E+ DA+ + + GR++R+ Sbjct: 429 SLREVFE---KATSIRI--PQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLE 483 Query: 234 VAE 226 ++ Sbjct: 484 FSQ 486 Score = 47.0 bits (110), Expect = 4e-05 Identities = 34/123 (27%), Positives = 60/123 (48%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 S+ E A+ A++ + ++ GR + + + G + S S ++V L + Sbjct: 458 SSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQ-GGGRGGSAQSKTLFVRGLSEDTTEE 516 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E F V+AR+V DRDTG S+GFGFV ++ E+ A A++ G + ++ Sbjct: 517 TLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLD 573 Query: 234 VAE 226 A+ Sbjct: 574 FAK 576 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/96 (25%), Positives = 43/96 (44%) Frame = -2 Query: 516 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 337 K P + + G S I++GNL + L + E + + D G S Sbjct: 215 KTIPEAKKTKTDTASEGLS--IFIGNLNSTKEFDELKDALREFFSKKNL-TIQDIRIGNS 271 Query: 336 RGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 + FG+V +S+EE++ A+ L G+ G +++ A Sbjct: 272 KKFGYVDFSSEEEVEKAL-KLTGKKILGTEVKIEKA 306
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 47.0 bits (110), Expect = 4e-05 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAA 116 Query: 294 DDAIAAL 274 A++AL Sbjct: 117 QKAVSAL 123 Score = 46.2 bits (108), Expect = 7e-05 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = -2 Query: 501 GARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 322 G + + + +Y+ NLP +D+ L + G+V+ R++ D +G SRG GF Sbjct: 127 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGF 185 Query: 321 VTMASQEELDDAIAALDGQ 265 M S E+ + I +G+ Sbjct: 186 ARMESTEKCEAVIGHFNGK 204
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 47.0 bits (110), Expect = 4e-05 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Frame = -2 Query: 471 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEEL 295 S F ++VG+L ++ L+ LF K V RV+ D TG SR FGFV ++E Sbjct: 188 STPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDER 247 Query: 294 DDAIAALDGQSXXGRALRVNVA 229 A+ + G+ GRALRV A Sbjct: 248 RRALIEMSGKWFQGRALRVAYA 269
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Frame = -2 Query: 579 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 403 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 AVRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 402 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 LF G+V++ VV D + FV M + + AIA L+G+ G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Frame = -2 Query: 579 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 403 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 AVRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 402 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 LF G+V++ VV D + FV M + + AIA L+G+ G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 47.0 bits (110), Expect = 4e-05 Identities = 24/86 (27%), Positives = 41/86 (47%) Frame = -2 Query: 522 VNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG 343 V+ G + + + +Y+ NLP +D+ L + G+V+ RV+ D +G Sbjct: 120 VSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSG 178 Query: 342 RSRGFGFVTMASQEELDDAIAALDGQ 265 SRG GF M S E+ + I +G+ Sbjct: 179 ASRGVGFARMESTEKCEAVIGHFNGK 204 Score = 46.6 bits (109), Expect = 5e-05 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAA 116 Query: 294 DDAIAAL 274 A++AL Sbjct: 117 QKAVSAL 123
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 47.0 bits (110), Expect = 4e-05 Identities = 22/89 (24%), Positives = 46/89 (51%) Frame = -2 Query: 549 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 370 + ++GR++ +A R + P + +++VG + ++ L E F E+GK+ Sbjct: 72 HTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129 Query: 369 RVVYDRDTGRSRGFGFVTMASQEELDDAI 283 ++ D+ +G+ RGF FVT + +D + Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 ++++G L ++ + L + + G + D V+ D + RSRGFGFVT + E+D A+A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S +IY+ NLP + + ++VEL G ++ +++ + G S+GF F + + + A Sbjct: 308 SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367 Query: 285 IAALDGQSXXGRALRVNVA 229 I+ LDG+ G L A Sbjct: 368 ISGLDGKDTYGNKLHAQFA 386
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = -2 Query: 483 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 325 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 57 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 116 Query: 324 FVTMASQEELDDAI 283 FVT ++E +A+ Sbjct: 117 FVTFCTKEAAQEAV 130
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 46.6 bits (109), Expect = 5e-05 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Frame = -2 Query: 579 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 403 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 402 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 LF G+V++ VV D + FV M + + AIA L+G+ G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 46.6 bits (109), Expect = 5e-05 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Frame = -2 Query: 579 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 403 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 402 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 LF G+V++ VV D + FV M + + AIA L+G+ G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 46.6 bits (109), Expect = 5e-05 Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Frame = -2 Query: 585 EKAEKAVEMFHRYDVNGRLLTVNKAA--PRGARVERPPRDSGSSF-RIYVGNLPWQVDDS 415 E A+ A+E + + GR + V + + P+ +V ++ SF RIYV ++ + + Sbjct: 182 EGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEE 241 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRV 238 + +F G ++ ++ +G+GF+ A+++ +D+AIA+++ G+ LRV Sbjct: 242 DIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = -2 Query: 483 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 325 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 324 FVTMASQEELDDAI 283 FVT ++E +A+ Sbjct: 207 FVTFCTKEAAQEAV 220
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = -2 Query: 483 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 325 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 324 FVTMASQEELDDAI 283 FVT ++E +A+ Sbjct: 207 FVTFCTKEAAQEAV 220
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 46.6 bits (109), Expect = 5e-05 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R+++ N+ + + +LFS +G++ + V D TG+S+GF +V E +A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 276 LDGQSXXGRALRVNVAE 226 LD Q GR L + A+ Sbjct: 362 LDKQIFQGRLLHILPAD 378 Score = 43.1 bits (100), Expect = 6e-04 Identities = 28/80 (35%), Positives = 40/80 (50%) Frame = -2 Query: 462 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 S +I V NLP++ + ELFS G++ RV D +RGF FV E ++A+ Sbjct: 711 SGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAM 769 Query: 282 AALDGQSXXGRALRVNVAEE 223 L G GR L + AE+ Sbjct: 770 DQLQGVHLLGRRLVMQYAEQ 789 Score = 39.3 bits (90), Expect = 0.009 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Frame = -2 Query: 468 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVY-----DRDTGRSRGFGFVTMASQ 304 G + I+V NL + ++L E F V A+V + D S GFGF+ ++ Sbjct: 609 GPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTK 668 Query: 303 EELDDAIAALDGQSXXGRALRVNVAEE 223 E+ IAA+DG G +++ ++ + Sbjct: 669 EQAGAVIAAMDGAVIDGHKIQLKISHK 695 Score = 32.7 bits (73), Expect = 0.82 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELF---------SEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 304 R+ V LP ++++RL F ++ D ++V D+ +G SR F F+ S+ Sbjct: 3 RVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDK-SGNSRRFAFIGYRSE 61 Query: 303 EELDDAIAALDGQSXXGRALRVNVAE 226 ++ DAI +G + V +A+ Sbjct: 62 QDAFDAIEYFNGSFIDTARIEVAMAK 87
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 46.2 bits (108), Expect = 7e-05 Identities = 27/81 (33%), Positives = 41/81 (50%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 301 P + ++VGNL +V + L ELF + G + + DR+ G+ + FGFV E Sbjct: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE 61 Query: 300 ELDDAIAALDGQSXXGRALRV 238 + AIA L+G GR + V Sbjct: 62 SVSYAIALLNGIRLYGRPINV 82
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 45.8 bits (107), Expect = 9e-05 Identities = 35/123 (28%), Positives = 56/123 (45%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 S+ E AE A + + ++G L + K + RG E +I + NLP++ Sbjct: 659 SSKEAAEIAQKAMDGHVLDGHKLQL-KISNRGQDEETTETKKAIDSKILIKNLPFEATKK 717 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 + +LF G + RV + SRGF F S +E + A++AL G GR L + Sbjct: 718 DVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQ 776 Query: 234 VAE 226 A+ Sbjct: 777 YAQ 779 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/73 (27%), Positives = 37/73 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R+++ NL + + +LFS++G++ + + + TG+ +GF V E A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 276 LDGQSXXGRALRV 238 DG+ GR L + Sbjct: 362 QDGKIFQGRLLHI 374 Score = 37.0 bits (84), Expect = 0.044 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Frame = -2 Query: 528 LTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD 349 L+ + G+ ERP S S ++V NL ++ L + F + A+V D Sbjct: 585 LSASDVMDTGSNDERPATASTS---VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPD 641 Query: 348 TGR-----SRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 + S GFGFV +S+E + A A+DG G L++ ++ Sbjct: 642 SKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 45.4 bits (106), Expect = 1e-04 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Frame = -2 Query: 525 TVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 346 +V+ A A P FR++VG L S + LF G V + + R Sbjct: 22 SVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVR 81 Query: 345 GRSR----GFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 +R G FVT +QE++D AI L+G++ R + V A Sbjct: 82 RGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124 Score = 30.8 bits (68), Expect = 3.1 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 12/87 (13%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKV------------VDARVVYDRDTGRSRGFGFVTMA 310 IYV L + + L E+F + + R+ + R RGFGFV+ A Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266 Query: 309 SQEELDDAIAALDGQSXXGRALRVNVA 229 + E+ AI ++G+ L V A Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Frame = -2 Query: 573 KAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS----SFRIYVGNLPWQVDDSRLV 406 KAV +NGR + + + R ++ + S S ++VGNL + V D L Sbjct: 197 KAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLR 256 Query: 405 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 + F G +V R+ D+G+ +GF F+ ++E + + + GR LR+ E Sbjct: 257 KHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGE 316 Query: 225 E 223 + Sbjct: 317 D 317
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 45.4 bits (106), Expect = 1e-04 Identities = 32/119 (26%), Positives = 52/119 (43%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T+ E+A+ A++MFH+Y G+ L V + P D+ + + N+P Sbjct: 109 TLLNGEQAQNAIQMFHQYSFRGKDLIV----------QLQPTDA----LLCITNVPISFT 154 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRAL 244 EL +G + +VY TG S+G+GFV ++ A L G+ AL Sbjct: 155 SEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASAL 213
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/72 (37%), Positives = 37/72 (51%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I+VGNL + L E FS+ GKVV A ++ R G RG G V + +++D AI Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQY 195 Query: 273 DGQSXXGRALRV 238 DG R + V Sbjct: 196 DGAFFMDRKIFV 207 Score = 39.3 bits (90), Expect = 0.009 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 22/143 (15%) Frame = -2 Query: 588 IEKAEKAVEMFHRYDVNGRLLTVNKAAP-----RGARVERPPRDS--------------G 466 I+ +A+E ++ Y + G +L V G V+ P DS G Sbjct: 286 IKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEARKFTENVVG 345 Query: 465 SSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 R IY NLP+ S L +LF GKV +A + YD G G V + ++ Sbjct: 346 GGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYD-SKGAPTGIAVVEYDNVDDA 404 Query: 294 DDAIAALDGQSXXGRALRVNVAE 226 D I L+ + G L ++ A+ Sbjct: 405 DVCIERLNNYNYGGCDLDISYAK 427
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 RI+VG + ++ L +FS +G V +++ DR G S+G+GFVT +++E A Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQA- 91 Query: 276 LDGQSXXGRALRVNVA 229 DG+ R ++N+A Sbjct: 92 -DGECVVLRDRKLNIA 106
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/90 (27%), Positives = 45/90 (50%) Frame = -2 Query: 534 RLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD 355 + +T KA+ G + + + +Y+ NLP +D+ L + G+V+ R++ D Sbjct: 114 KAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD 171 Query: 354 RDTGRSRGFGFVTMASQEELDDAIAALDGQ 265 +G SRG GF M S E+ + I +G+ Sbjct: 172 -TSGASRGVGFARMESTEKCEAIITHFNGK 200 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 11/100 (11%) Frame = -2 Query: 540 NGRLLTVNKAAPRGARVERPPRDSG-----------SSFRIYVGNLPWQVDDSRLVELFS 394 N +L + AP R P G S +Y+ L D LV+L Sbjct: 20 NKKLYVAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQ 79 Query: 393 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 +GK+V + + D+ T + +G+GFV S A+ AL Sbjct: 80 PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTAL 119
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 45.1 bits (105), Expect = 2e-04 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I+VG + + L LFS++G ++ +++YD+ G G+GF++ + I L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 273 DGQSXXGRALRVN 235 +G++ G L +N Sbjct: 257 NGRTVNGSTLFIN 269 Score = 35.0 bits (79), Expect = 0.17 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 20/106 (18%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVY------------------- 358 P + +YV ++P D L + + G+++ +V+ Sbjct: 533 PMSNQQESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDN 592 Query: 357 DRDTGRSRGFGFVTMASQEELDDAIAALDG-QSXXGRALRVNVAEE 223 D G SRG+GFV+ S + AI DG Q + L V+ A++ Sbjct: 593 DLPVGSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQK 638
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/90 (27%), Positives = 45/90 (50%) Frame = -2 Query: 534 RLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD 355 + +T KA+ G + + + +Y+ NLP +D+ L + G+V+ R++ D Sbjct: 112 KAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD 169 Query: 354 RDTGRSRGFGFVTMASQEELDDAIAALDGQ 265 +G SRG GF M S E+ + I +G+ Sbjct: 170 -TSGTSRGVGFARMESTEKCEAIITHFNGK 198 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = -2 Query: 474 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 295 D S +Y+ L D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 51 DQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAA 110 Query: 294 DDAIAAL 274 A+ AL Sbjct: 111 QKAVTAL 117
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 45.1 bits (105), Expect = 2e-04 Identities = 33/119 (27%), Positives = 52/119 (43%) Frame = -2 Query: 600 TMSTIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVD 421 T+ E+A+ A++ FH++ GR LTV + P D+ + + NLP Sbjct: 98 TLLNGEQAQSAIQRFHQFSFRGRELTV----------QLQPTDA----LLCITNLPISFT 143 Query: 420 DSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRAL 244 EL +G + +VY TG S+G+GFV ++ A L G+ AL Sbjct: 144 LEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASAL 202
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 44.7 bits (104), Expect = 2e-04 Identities = 33/123 (26%), Positives = 60/123 (48%) Frame = -2 Query: 594 STIEKAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 415 ++ E A++A+ ++ ++ GR + + +G+ P S ++V L + Sbjct: 531 ASFEDAKEALNSCNKMEIEGRTIRLEL---QGSNSRSQP-----SKTLFVKGLSEDTTEE 582 Query: 414 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVN 235 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ G + ++ Sbjct: 583 TLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 639 Query: 234 VAE 226 A+ Sbjct: 640 WAK 642 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRD---SGSSFRIYVGNLPWQVDDSRL 409 AEK +E +++GR +++ +G R ER + SG S + + NL + L Sbjct: 443 AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETL 502 Query: 408 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNV 232 E+F + + V G+ +G+ F+ AS E+ +A+ + + GR +R+ + Sbjct: 503 EEVFEKATFI----KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 557
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = -2 Query: 480 PRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 304 P G +F+ ++V + + +S+L F +G + +VY + +G+ RG+ F+ + Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154 Query: 303 EELDDAIAALDGQSXXGRALRVNV 232 ++ A DG+ GR + V+V Sbjct: 155 RDMHSAYKHADGKKIDGRRVLVDV 178
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/98 (26%), Positives = 45/98 (45%) Frame = -2 Query: 516 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 337 +A P+ E + R+++ N+ + + +LFS G++ + V D TG+S Sbjct: 326 RAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQS 385 Query: 336 RGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVAEE 223 +GF +V + +A LD Q GR L + EE Sbjct: 386 KGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEE 423 Score = 43.5 bits (101), Expect = 5e-04 Identities = 28/85 (32%), Positives = 43/85 (50%) Frame = -2 Query: 477 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 298 + + S +I V NLP++ + ELF+ G++ RV D +RGF FV +E Sbjct: 757 KSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKE 815 Query: 297 LDDAIAALDGQSXXGRALRVNVAEE 223 ++A+ L G GR L + AEE Sbjct: 816 AENAMDQLHGVHLLGRRLVMQYAEE 840 Score = 35.8 bits (81), Expect = 0.097 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 5/85 (5%) Frame = -2 Query: 468 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 304 G + I++ NL + + L + F V A+V D S GFGFV ++ Sbjct: 660 GPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTK 719 Query: 303 EELDDAIAALDGQSXXGRALRVNVA 229 E+ + IAA+DG G +++ ++ Sbjct: 720 EQANAVIAAMDGTVIDGHKIQLKLS 744 Score = 34.3 bits (77), Expect = 0.28 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGK---------------VVDARVVYDRDTGRSRGFGF 322 RI V LP + D L E F++ + + D +++ DR+ G SR FGF Sbjct: 3 RIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRN-GESRRFGF 61 Query: 321 VTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 + ++E+ DA+ +G + V++A+ Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAK 93
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S+ ++++G LP ++D ++ EL + G + +V D TG S+G+ F D A Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 285 IAALDGQSXXGRALRVNVA 229 IA L+G + L V A Sbjct: 317 IAGLNGMQLGDKKLLVQRA 335 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKV-----VDARVVYDRDTGRSRGFGFVTMASQEELD 292 R+YVGN+P+ + + +++ F+ ++ V + + F F+ S +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 291 DAIAALDGQSXXGRALRV 238 A+ A DG G++L++ Sbjct: 210 QAM-AFDGIIFQGQSLKI 226
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S+ ++++G LP ++D ++ EL + G + +V D TG S+G+ F D A Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 285 IAALDGQSXXGRALRVNVA 229 IA L+G + L V A Sbjct: 317 IAGLNGMQLGDKKLLVQRA 335 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKV-----VDARVVYDRDTGRSRGFGFVTMASQEELD 292 R+YVGN+P+ + + +++ F+ ++ V + + F F+ S +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 291 DAIAALDGQSXXGRALRV 238 A+ A DG G++L++ Sbjct: 210 QAM-AFDGIIFQGQSLKI 226
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/89 (32%), Positives = 42/89 (47%) Frame = -2 Query: 510 APRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRG 331 A R A SG S +I + NLP++ + +LFS G++ R+ D +RG Sbjct: 702 ARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFD-NTTRG 760 Query: 330 FGFVTMASQEELDDAIAALDGQSXXGRAL 244 FGFV ++ E A+ AL GR L Sbjct: 761 FGFVEYSTVREAQSAMEALKHTHLLGRHL 789 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/75 (28%), Positives = 34/75 (45%) Frame = -2 Query: 462 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 S R+++ NLP+ ++ F G V + D+ T S+G FV+ + A Sbjct: 313 SGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAY 372 Query: 282 AALDGQSXXGRALRV 238 A DG + GR L + Sbjct: 373 RAKDGSTFQGRLLHL 387 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/58 (41%), Positives = 34/58 (58%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 283 R+ V LP + D+RL E FS+ G V D +++ R G SR FGFV S++E A+ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQAL 59 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDD 289 +YV NL + D RL F AR+ D R S G+GFV S + Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 288 AIAALDGQSXXGRALRVNVA 229 A A+DG+ L V A Sbjct: 683 AQKAMDGKVLDAHTLVVTFA 702
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = -2 Query: 480 PRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 304 P G +F+ ++V + + +S+L F +G + +VY + +G+ RG+ F+ + Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154 Query: 303 EELDDAIAALDGQSXXGRALRVNV 232 ++ A DG+ GR + V+V Sbjct: 155 RDMHSAYKHADGKKIDGRRVLVDV 178
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R+++ N+ + + +LFS +G++ + + D TG+S+GF +V + + A Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390 Query: 276 LDGQSXXGRALRVNVAE 226 LD Q GR L + A+ Sbjct: 391 LDKQIFQGRLLHILPAD 407 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/78 (33%), Positives = 39/78 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 +I V NLP++ + ELFS G++ RV D +RGF FV +E ++A+ Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQ 811 Query: 276 LDGQSXXGRALRVNVAEE 223 L G GR L + E+ Sbjct: 812 LQGVHLLGRRLVMEFVEQ 829
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/117 (26%), Positives = 53/117 (45%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAK 97 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F E+G V++ +V D + FV M E+ +AI LD G+ + V ++ Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G + V ++ Sbjct: 55 LHHYKLHGVNINVEASK 71
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/117 (26%), Positives = 53/117 (45%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAK 97 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F E+G V++ +V D + FV M E+ +AI LD G+ + V ++ Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G + V ++ Sbjct: 55 LHHYKLHGVNINVEASK 71
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/117 (26%), Positives = 53/117 (45%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F E+G V++ +V D + FV M E+ +AI LD G+ + V ++ Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G + V ++ Sbjct: 55 LHHYKLHGVNINVEASK 71
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/117 (26%), Positives = 53/117 (45%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F E+G V++ +V D + FV M E+ +AI LD G+ + V ++ Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G + V ++ Sbjct: 55 LHHYKLHGVNINVEASK 71
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/117 (26%), Positives = 53/117 (45%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F E+G V++ +V D + FV M E+ +AI LD G+ + V ++ Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G + V ++ Sbjct: 55 LHHYKLHGVNINVEASK 71
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/117 (26%), Positives = 53/117 (45%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F E+G V++ +V D + FV M E+ +AI LD G+ + V ++ Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G + V ++ Sbjct: 55 LHHYKLHGVNINVEASK 71
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/117 (26%), Positives = 53/117 (45%) Frame = -2 Query: 579 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 400 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 399 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSXXGRALRVNVA 229 F E+G V++ +V D + FV M E+ +AI LD G+ + V ++ Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146 Score = 37.7 bits (86), Expect = 0.026 Identities = 18/77 (23%), Positives = 39/77 (50%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 276 LDGQSXXGRALRVNVAE 226 L G + V ++ Sbjct: 55 LHHYKLHGVNINVEASK 71
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 43.9 bits (102), Expect = 4e-04 Identities = 25/79 (31%), Positives = 39/79 (49%) Frame = -2 Query: 465 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 286 S +I++G LP ++D ++ EL GK+ +V D TG S+G+ F D + Sbjct: 205 SPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQS 264 Query: 285 IAALDGQSXXGRALRVNVA 229 IA L+G + L V A Sbjct: 265 IAGLNGMQLGDKKLIVQRA 283 Score = 34.3 bits (77), Expect = 0.28 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVD-----ARVVYDRDTGRSRGFGFVTMASQEELD 292 R+YVGN+P+ V + ++E F++ +V V + F F+ S +E Sbjct: 94 RLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETT 153 Query: 291 DAIAALDGQSXXGRALRV 238 A+ A DG + G++L++ Sbjct: 154 QAM-AFDGINLKGQSLKI 170
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R++VGNLP + + LF+++G+ + + + +GFGF+ + S+ + A A Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 343 Query: 276 LDGQSXXGRALRVNVA 229 LD GR LRV A Sbjct: 344 LDDTPMRGRQLRVRFA 359
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -2 Query: 456 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 277 R++VGNLP + + LF+++G+ + + + +GFGF+ + S+ + A A Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 351 Query: 276 LDGQSXXGRALRVNVA 229 LD GR LRV A Sbjct: 352 LDDTPMRGRQLRVRFA 367
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 43.5 bits (101), Expect = 5e-04 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 + YVGNLP+ + +F + + R+V D+DT + +GF +V + L +A+ Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 279 ALDGQSXXGRALRVNVAE 226 DG R+LRV++AE Sbjct: 99 TYDGALLGDRSLRVDIAE 116
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 43.5 bits (101), Expect = 5e-04 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -2 Query: 459 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 280 + YVGNLP+ + +F + + R+V D+DT + +GF +V + L +A+ Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 279 ALDGQSXXGRALRVNVAE 226 DG R+LRV++AE Sbjct: 99 TYDGALLGDRSLRVDIAE 116
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = -2 Query: 453 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 274 I++G LP + + L+ L + GK+ + R++ D + G +RG+ FVT ++++E +AI L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 273 DG-QSXXGRALRV 238 + + GR L V Sbjct: 117 NNYEIRTGRLLGV 129
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 43.5 bits (101), Expect = 5e-04 Identities = 31/93 (33%), Positives = 47/93 (50%) Frame = -2 Query: 504 RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 325 R +R E+ G +F +V L + L LFS +GKVV A+VV + + +R +G Sbjct: 415 RLSREEKGRSSCGRNF--WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYG 472 Query: 324 FVTMASQEELDDAIAALDGQSXXGRALRVNVAE 226 FVTM++ EE I L G+ + V A+ Sbjct: 473 FVTMSTAEEATKCINHLHKTELHGKMISVEKAK 505
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Frame = -2 Query: 480 PRDSGSSFRIYVGNLPWQVDDSRLVE-LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 304 PR S R+++GNL V VE +FS++GK+V V +GF FV +++ Sbjct: 12 PRSMNS--RVFIGNLNTLVVKKTDVEAIFSKYGKIVGCSV--------HKGFAFVQFSNE 61 Query: 303 EELDDAIAALDGQSXXGRALRVNVAEE 223 A+A DG+ G+ L +N+A E Sbjct: 62 RTARTAVAGEDGRMIAGQVLDINLAAE 88
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 43.1 bits (100), Expect = 6e-04 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = -2 Query: 468 GSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 292 G +F+ ++V + + +S+L F +G + +VY++ +G+ RG+ F+ + ++ Sbjct: 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMH 158 Query: 291 DAIAALDGQSXXGRALRVNV 232 A DG+ GR + V+V Sbjct: 159 SAYKHADGKKIDGRRVLVDV 178 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,082,373 Number of Sequences: 219361 Number of extensions: 1968717 Number of successful extensions: 7060 Number of sequences better than 10.0: 447 Number of HSP's better than 10.0 without gapping: 6308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6921 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
