ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR352249.24| Zebrafish DNA sequence from clone DKEY-97O18 in... 38 1.2
2gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19,... 38 1.2
3gb|AY591266.1| Digitalis lutea subsp. lutea 18S ribosomal RNA ge... 36 4.6
4gb|AY591265.1| Digitalis lutea subsp. australis 18S ribosomal RN... 36 4.6
5gb|AY591263.1| Digitalis atlantica 18S ribosomal RNA gene, parti... 36 4.6
6gb|AY591262.1| Digitalis viridiflora internal transcribed spacer... 36 4.6
7gb|AY591261.1| Digitalis grandiflora 18S ribosomal RNA gene, par... 36 4.6
8gb|AY591259.1| Digitalis mariana subsp. mariana 18S ribosomal RN... 36 4.6
9gb|AY591258.1| Digitalis purpurea subsp. toletana 18S ribosomal ... 36 4.6
10gb|AY591257.1| Digitalis purpurea subsp. purpurea 18S ribosomal ... 36 4.6
11gb|AY591256.1| Digitalis thapsi 18S ribosomal RNA gene, partial ... 36 4.6
12gb|AY911261.1| Digitalis purpurea internal transcribed spacer 1,... 36 4.6
13gb|AY878112.1| Digitalis purpurea voucher UTEP 54185 internal tr... 36 4.6
14gb|AC174356.5| Medicago truncatula clone mth2-18j17, complete se... 36 4.6
15gb|AC142143.29| Medicago truncatula clone mth2-25c22, complete s... 36 4.6
16gb|AY492102.1| Digitalis purpurea 18S ribosomal RNA gene, partia... 36 4.6 
>emb|CR352249.24| Zebrafish DNA sequence from clone DKEY-97O18 in linkage group 7, complete
              sequence
          Length = 180142

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     gcaaccatggtgatctaaa 36
              |||||||||||||||||||
Sbjct: 134309 gcaaccatggtgatctaaa 134327
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>gb|AC172877.1| Brassica rapa subsp. pekinensis clone KBrH042F19, complete sequence
          Length = 108651

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    aagcaaccatggtgatcta 34
             |||||||||||||||||||
Sbjct: 50197 aagcaaccatggtgatcta 50179
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>gb|AY591266.1| Digitalis lutea subsp. lutea 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 715

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 115 caagcaagcatggtgatctaaa 94
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>gb|AY591265.1| Digitalis lutea subsp. australis 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 715

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 115 caagcaagcatggtgatctaaa 94
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>gb|AY591263.1| Digitalis atlantica 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 715

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 115 caagcaagcatggtgatctaaa 94
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>gb|AY591262.1| Digitalis viridiflora internal transcribed spacer 1, partial
          sequence; 5.8S ribosomal RNA gene and internal
          transcribed spacer 2, complete sequence; and 26S
          ribosomal RNA gene, partial sequence
          Length = 620

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 15 caagcaaccatggtgatctaaa 36
          ||||||| ||||||||||||||
Sbjct: 76 caagcaagcatggtgatctaaa 55
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>gb|AY591261.1| Digitalis grandiflora 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 716

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 115 caagcaagcatggtgatctaaa 94
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>gb|AY591259.1| Digitalis mariana subsp. mariana 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 718

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 116 caagcaagcatggtgatctaaa 95
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>gb|AY591258.1| Digitalis purpurea subsp. toletana 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 718

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 116 caagcaagcatggtgatctaaa 95
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>gb|AY591257.1| Digitalis purpurea subsp. purpurea 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 26S ribosomal RNA gene, partial sequence
          Length = 717

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 116 caagcaagcatggtgatctaaa 95
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>gb|AY591256.1| Digitalis thapsi 18S ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence; and
           26S ribosomal RNA gene, partial sequence
          Length = 718

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 116 caagcaagcatggtgatctaaa 95
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>gb|AY911261.1| Digitalis purpurea internal transcribed spacer 1, partial
          sequence; 5.8S ribosomal RNA gene, complete sequence;
          and internal transcribed spacer 2, partial sequence
          Length = 554

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 15 caagcaaccatggtgatctaaa 36
          ||||||| ||||||||||||||
Sbjct: 90 caagcaagcatggtgatctaaa 69
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>gb|AY878112.1| Digitalis purpurea voucher UTEP 54185 internal transcribed spacer
          1, 5.8S ribosomal RNA gene, and internal transcribed
          spacer 2, complete sequence
          Length = 591

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 15 caagcaaccatggtgatctaaa 36
          ||||||| ||||||||||||||
Sbjct: 99 caagcaagcatggtgatctaaa 78
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>gb|AC174356.5| Medicago truncatula clone mth2-18j17, complete sequence
          Length = 81625

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     atattattccaagcaacc 23
             ||||||||||||||||||
Sbjct: 16969 atattattccaagcaacc 16952
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>gb|AC142143.29| Medicago truncatula clone mth2-25c22, complete sequence
          Length = 124110

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 6      atattattccaagcaacc 23
              ||||||||||||||||||
Sbjct: 100443 atattattccaagcaacc 100426
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>gb|AY492102.1| Digitalis purpurea 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 646

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 15  caagcaaccatggtgatctaaa 36
           ||||||| ||||||||||||||
Sbjct: 142 caagcaagcatggtgatctaaa 121


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 257,629
Number of Sequences: 3902068
Number of extensions: 257629
Number of successful extensions: 73214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73195
Number of HSP's gapped (non-prelim): 19
length of query: 41
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 21
effective length of database: 17,155,003,908
effective search space: 360255082068
effective search space used: 360255082068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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