ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3d12 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 47.0 bits (110), Expect = 3e-05 Identities = 35/117 (29%), Positives = 58/117 (49%) Frame = -2 Query: 501 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 322 EV I E+L + S +N + LR + DL L +WV + +G+ N LT Sbjct: 1050 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1109 Query: 321 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 151 L + + L+++PV+YE++ ++D + A +K A K+ +KIP LK K Sbjct: 1110 LLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMA----KIQAKIP--GLKRK 1160
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 46.6 bits (109), Expect = 4e-05 Identities = 35/117 (29%), Positives = 58/117 (49%) Frame = -2 Query: 501 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 322 EV I E+L + S +N + LR + DL L +WV + +G+ N LT Sbjct: 1051 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1110 Query: 321 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 151 L + + L+++PV+YE++ ++D + A +K A K+ +KIP LK K Sbjct: 1111 LLILALISLFSIPVIYERHQVQIDHYLGLANKSVKDAMA----KIQAKIP--GLKRK 1161
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 46.6 bits (109), Expect = 4e-05 Identities = 36/117 (30%), Positives = 58/117 (49%) Frame = -2 Query: 501 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 322 EV I E+L + S +N + LR + DL L +WV + +G+ N LT Sbjct: 1080 EVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1139 Query: 321 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 151 L + + L++VPV+YE++ ++D + A +K A K+ +KIP LK K Sbjct: 1140 LLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMA----KIQAKIP--GLKRK 1190
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/98 (28%), Positives = 53/98 (54%) Frame = -2 Query: 444 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 265 INR L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 142 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKY 201 Query: 264 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 151 ++D + A + K EK+ +K+P G K K Sbjct: 202 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 234
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 42.4 bits (98), Expect = 8e-04 Identities = 26/98 (26%), Positives = 53/98 (54%) Frame = -2 Query: 444 INRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKY 265 +N+ L + + DL L + +W+++ +G+ N +TL + +++++VP++YEKY Sbjct: 143 VNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKY 202 Query: 264 DDKVDAFGEKAMIELKKYYAIFEEKVLSKIPKGALKNK 151 ++D + A + K EK+ +K+P G K K Sbjct: 203 KTQIDHYVGIARDQTKS----IVEKIQAKLP-GIAKKK 235
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 40.4 bits (93), Expect = 0.003 Identities = 28/110 (25%), Positives = 53/110 (48%) Frame = -2 Query: 501 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 322 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 321 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 172 L + V ++T+PV+Y K+ ++D + + A K+ +KIP Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA----KIQAKIP 769
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 40.4 bits (93), Expect = 0.003 Identities = 28/110 (25%), Positives = 53/110 (48%) Frame = -2 Query: 501 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 322 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 321 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 172 L + V ++T+PV+Y K+ ++D + + A K+ +KIP Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVA----KIQAKIP 769
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 40.0 bits (92), Expect = 0.004 Identities = 29/110 (26%), Positives = 53/110 (48%) Frame = -2 Query: 501 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 322 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 665 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 724 Query: 321 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 172 L + V ++T+PV+Y K+ +VD + + A K+ +KIP Sbjct: 725 LLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVA----KIQAKIP 770
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 40.0 bits (92), Expect = 0.004 Identities = 29/110 (26%), Positives = 53/110 (48%) Frame = -2 Query: 501 EVKIPEDLTVNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLT 322 E+ + ++ L+ +N L LR + +DL L +W+L+ +G+ N LT Sbjct: 668 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 727 Query: 321 LSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLSKIP 172 L + V ++T+PV+Y K+ +VD + + A K+ +KIP Sbjct: 728 LLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVA----KIQAKIP 773
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 35.4 bits (80), Expect = 0.10 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = -2 Query: 363 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVL 184 ++L+ +G+ N LTL + V L+TVP+LY ++ ++D + +L A K+ Sbjct: 393 YILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQYVGLVTNQLSHIKA----KIR 448 Query: 183 SKIP 172 +KIP Sbjct: 449 AKIP 452
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 33.9 bits (76), Expect = 0.29 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 363 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVL 184 ++L+ +G+ N LTL + + L+T+P+LY ++ ++D + +L A K+ Sbjct: 466 YILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKA----KIR 521 Query: 183 SKIP-KGAL 160 +KIP GAL Sbjct: 522 AKIPGTGAL 530
>YL185_MIMIV (Q5URB5) Hypothetical protein L185| Length = 392 Score = 32.7 bits (73), Expect = 0.66 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +1 Query: 175 DLRQDLLFKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQH 300 D DL+F + +ILL ++G +I++V ILL DS+QH Sbjct: 147 DTNNDLIFNNDLILLIFEYGFFEDTIDVVKILL----DSIQH 184
>Y779_METJA (Q58189) Hypothetical protein MJ0779| Length = 299 Score = 32.0 bits (71), Expect = 1.1 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = -2 Query: 453 RHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNFLTL-SYIVFVVLYTVPVL 277 + I R + +++G D KKF++++ + + +L S LTL S I+FVV+Y L Sbjct: 10 KRTIKRNIILFKKLGKDFDEKKFILLLIIIAAIPLLISYYLHLTLKSMIIFVVIYVGAAL 69 Query: 276 YEK---YDDKVD 250 + Y++K++ Sbjct: 70 FIPSILYENKIE 81
>SHCBP_MOUSE (Q9Z179) SHC SH2 domain-binding protein 1 (Protein expressed in| activated lymphocytes) (mPAL) (SHC-binding protein) Length = 668 Score = 32.0 bits (71), Expect = 1.1 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = -2 Query: 474 VNIALSLRHEINRGLFTLREIGHGRDLKKFLIVIGGLWVLSVLGSCCNF----LTLSYIV 307 V +A +E FTL + DLK+F + + LWV+S F L + ++ Sbjct: 142 VRLAEPCIYESKLSTFTLANVKELLDLKEFHLPLQELWVVS--DDSHEFHQMALAIEHVR 199 Query: 306 FVVLYTVPVLYEKYDDKVDAFGEKAMIELKKYYAIFEEKVLS 181 F + E+ +D+ D F L+ YY I E++V S Sbjct: 200 FFYKHIWRSWDEEEEDEYDYFVRCVEPRLRLYYDILEDRVPS 241
>Y393_PYRAB (Q9V1N4) UPF0278 protein PYRAB03930| Length = 204 Score = 31.6 bits (70), Expect = 1.5 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -2 Query: 534 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 430 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 69 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 103
>Y1880_PYRFU (Q8TH04) UPF0278 protein PF1880| Length = 199 Score = 31.6 bits (70), Expect = 1.5 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -2 Query: 534 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 430 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 67 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 101
>Y1839_PYRHO (O59517) UPF0278 protein PH1839| Length = 204 Score = 31.6 bits (70), Expect = 1.5 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = -2 Query: 534 IFIHKSPPNIPEVKIPEDLTVNIALSLRHEINRGL 430 ++I K PPN+ ++KIP + + +R +++GL Sbjct: 69 LYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGL 103
>PRP5_YARLI (Q6CCZ1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC| 3.6.1.-) Length = 974 Score = 30.8 bits (68), Expect = 2.5 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = +1 Query: 196 FKDGIILLQLDHGLLTKSINLVIILLIQNWDSVQHHKDYI 315 FK G++ + + + + +++ + L+ NWDS H +DY+ Sbjct: 710 FKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNHMEDYV 749
>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) Length = 238 Score = 30.4 bits (67), Expect = 3.3 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Frame = -2 Query: 387 FLIVIGGLWVLSVL--GSCC--NFLTLSYIVFVVLYTVPVLYEKYDDKVDAFGEKAMIEL 220 F++ IG + + L C F L +VF++ T+ VL+ Y DK+D++ ++ +L Sbjct: 63 FVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQ---DL 119 Query: 219 KK 214 KK Sbjct: 120 KK 121
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = +3 Query: 159 SKHPSGSSTGPSLQR----WHNTSSTRSWPSHQKHQPCHHTSHTELGQCTAPQ 305 + HPS SS+ S WH ++ + HQ++Q H TE T P+ Sbjct: 263 ASHPSSSSSSSSSSNPNSIWHTSTQQQQQQQHQQNQQNHWQMTTEPSFITKPR 315
>TSN4_HUMAN (O14817) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) (Novel antigen 2) (NAG-2) Length = 238 Score = 28.9 bits (63), Expect = 9.5 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 12/69 (17%) Frame = -2 Query: 384 LIVIGGLWVLSV-----LGSC-------CNFLTLSYIVFVVLYTVPVLYEKYDDKVDAFG 241 L++I G +V+++ LG+ F L +VF++ T+ +L+ Y DK+D + Sbjct: 56 LLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYA 115 Query: 240 EKAMIELKK 214 ++ +LKK Sbjct: 116 QQ---DLKK 121
>NU2M_ASCSU (P24877) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 300 Score = 28.9 bits (63), Expect = 9.5 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 363 WVLSVLGSCCNFLTLSYIVFVVLYTVPVLYEKYD 262 WV SV GS ++L + ++ F L +PVL + +D Sbjct: 88 WVFSVTGSLYDWLLMWFLTFQKLPFLPVLVQLFD 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,391,478 Number of Sequences: 219361 Number of extensions: 1437317 Number of successful extensions: 4664 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4547 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4661 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
