ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132083.3| Mus musculus BAC clone RP24-540G23 from chromosome 5, complete sequence Length = 158764 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Plus Query: 522 ctttccagagcaatacaatgaaat 545 |||||||||||||||||||||||| Sbjct: 102570 ctttccagagcaatacaatgaaat 102593
>emb|CR751236.6| Zebrafish DNA sequence from clone DKEY-27M6 in linkage group 23, complete sequence Length = 108342 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Minus Query: 525 tccagagcaatacaatgaaatgaaatggaatg 556 ||||||||||| ||||||||||||||| |||| Sbjct: 52695 tccagagcaatgcaatgaaatgaaatgcaatg 52664
>gb|AC161462.5| Gallus gallus BAC clone CH261-174G12 from chromosome ul, complete sequence Length = 238858 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 294 agtttctaatttgtgtttttctttctta 321 |||||||||||||||||||| ||||||| Sbjct: 131527 agtttctaatttgtgtttttttttctta 131554
>ref|XM_648428.1| Entamoeba histolytica HM-1:IMSS myotubularin (80.t00027) partial mRNA Length = 2790 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 484 ttttctccataaaactggtgcttgct 509 ||||||||||||||||||| |||||| Sbjct: 2754 ttttctccataaaactggtacttgct 2729
>gb|AC004932.4| Homo sapiens PAC clone RP5-943F2 from 7, complete sequence Length = 151183 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 135 aagaaaaagaaatctcaacctc 156 |||||||||||||||||||||| Sbjct: 45355 aagaaaaagaaatctcaacctc 45376
>emb|BX005126.10| Zebrafish DNA sequence from clone CH211-129O9 in linkage group 5, complete sequence Length = 160487 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 300 taatttgtgtttttctttctta 321 |||||||||||||||||||||| Sbjct: 156578 taatttgtgtttttctttctta 156557
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 tgagaagaaaaagaaatctcaa 152 |||||||||||||||||||||| Sbjct: 1242119 tgagaagaaaaagaaatctcaa 1242098
>emb|BX547938.9| Zebrafish DNA sequence from clone DKEY-85K8 in linkage group 5, complete sequence Length = 162785 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 taatttgtgtttttctttctta 321 |||||||||||||||||||||| Sbjct: 50337 taatttgtgtttttctttctta 50358
>emb|AL121809.6|CNS01DSK Human chromosome 14 DNA sequence BAC C-3028N15 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 213442 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 293 tagtttctaatttgtgtttttctttc 318 ||||||| |||||||||||||||||| Sbjct: 65180 tagtttcaaatttgtgtttttctttc 65155
>emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in linkage group 3, complete sequence Length = 147391 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 attgttgcagttccagtggcc 110 ||||||||||||||||||||| Sbjct: 58499 attgttgcagttccagtggcc 58519
>gb|AC002454.1| Homo sapiens BAC clone GS1-552A1 from 7, complete sequence Length = 172983 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 atctccatggaaggcaagtgg 178 ||||||||||||||||||||| Sbjct: 171935 atctccatggaaggcaagtgg 171955
>gb|AC146789.30| Medicago truncatula clone mth2-71h24, complete sequence Length = 127922 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cgaggaaactgttttgccttcaata 264 ||||||||| ||||||||||||||| Sbjct: 59888 cgaggaaaccgttttgccttcaata 59864
>emb|Z80232.1|HS463A9 Human DNA sequence from clone RP3-463A9 on chromosome X Contains part of the COVA1 gene for cytosolic ovarian carcinoma antigen 1, complete sequence Length = 101196 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 122 gcttacttctgagaagaaaaa 142 ||||||||||||||||||||| Sbjct: 91366 gcttacttctgagaagaaaaa 91346
>emb|AL590623.16| Human DNA sequence from clone RP11-96F8 on chromosome 10 Contains a N-acetylated alpha-linked acidic dipeptidase 2 (NAALAD2) pseudogene, complete sequence Length = 81908 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 533 aatacaatgaaatgaaatggaatgg 557 ||||||||| ||||||||||||||| Sbjct: 17210 aatacaatggaatgaaatggaatgg 17186
>emb|AL450384.34| Human DNA sequence from clone RP11-383B4 on chromosome 10 Contains the 3' end of the CACNB2 gene for calcium channel voltage-dependent beta 2 subunit, the 5' end of a novel gene, a novel gene and the 3' end of a novel gene (LOC221078) (FLJ23743), complete sequence Length = 124571 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 aatacaatgaaatgaaatggaatgg 557 |||| |||||||||||||||||||| Sbjct: 48185 aatagaatgaaatgaaatggaatgg 48209 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 aatacaatgaaatgaaatggaatgg 557 |||| |||||||||||||||||||| Sbjct: 47823 aatagaatgaaatgaaatggaatgg 47847
>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21 Contains the 3' end of the gene for a novel protein similar to sorting nexin 7 (SNX7), the TSCOT gene for thymic stromal co-transporter, a pseudogene similar to Mus musculus major urinary proteins and a CpG island, complete sequence Length = 141659 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 cataaaagagaagatccaaag 213 ||||||||||||||||||||| Sbjct: 120808 cataaaagagaagatccaaag 120788
>emb|AL137881.12| Human DNA sequence from clone RP11-40A8 on chromosome 13 Contains a novel gene, the 3' end of the GUCY1B2 gene for guanylate cyclase 1 soluble beta 2 and a CpG island, complete sequence Length = 143324 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 tgtttttctttcttacatgca 327 ||||||||||||||||||||| Sbjct: 41617 tgtttttctttcttacatgca 41637
>emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on chromosome 10 Contains the 3' end of a gene for a novel protein similar to 17-beta-hydroxysteroid dehydrogenase type 7 (HSD17B7), the gene for a novel protein similar to CDC10 cell division cycle 10, homolog (S. cerevisiae) (CDC10), a novel gene, a novel gene containing FLJ14186, a capicua homolog (Drosophila) (CIC) pseudogene and a CpG island, complete sequence Length = 166835 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatggt 558 ||||||||||||||||||||| Sbjct: 161372 aatgaaatgaaatggaatggt 161392 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 132035 aatgaaatgaaatggaatgg 132054
>ref|NG_000880.1| Homo sapiens arylsulfatase E pseudogene (ARSEP) on chromosome Y Length = 15462 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cttgctggtgaatggcatctt 524 ||||||||||||||||||||| Sbjct: 14935 cttgctggtgaatggcatctt 14915
>gb|AC151799.2| Pan troglodytes BAC clone RP43-44D10 from chromosome 7, complete sequence Length = 183888 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 atctccatggaaggcaagtgg 178 ||||||||||||||||||||| Sbjct: 22630 atctccatggaaggcaagtgg 22610
>gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, complete sequence Length = 159722 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 caatgaaatgaaatggaatgg 557 ||||||||||||||||||||| Sbjct: 16960 caatgaaatgaaatggaatgg 16980
>gb|AC118282.4| Homo sapiens BAC clone RP11-1281K21 from 4, complete sequence Length = 208765 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 533 aatacaatgaaatgaaatggaatgg 557 ||||||||| ||||||||||||||| Sbjct: 60115 aatacaatggaatgaaatggaatgg 60091 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 533 aatacaatgaaatgaaatggaatgg 557 ||||||||| ||||||||||||||| Sbjct: 52288 aatacaatggaatgaaatggaatgg 52264
>gb|AC119751.3| Homo sapiens BAC clone RP11-241F15 from 4, complete sequence Length = 171176 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 aatacaatgaaatgaaatggaatgg 557 ||||||||| ||||||||||||||| Sbjct: 167651 aatacaatggaatgaaatggaatgg 167675 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 aatacaatgaaatgaaatggaatgg 557 ||||||||| ||||||||||||||| Sbjct: 160193 aatacaatggaatgaaatggaatgg 160217 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 163560 aatgaaatgaaatggaatgg 163579
>gb|AC002086.1|AC002086 Human PAC clone RP3-525N14 from Xq23, complete sequence Length = 112686 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 gtttctaatttgtgtttttct 315 ||||||||||||||||||||| Sbjct: 111376 gtttctaatttgtgtttttct 111356
>gb|AC002992.1|AC002992 Homo sapiens chromosome Y, clone 203M13, complete sequence Length = 154848 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 cttgctggtgaatggcatctt 524 ||||||||||||||||||||| Sbjct: 43802 cttgctggtgaatggcatctt 43782
>emb|BX005375.9| Zebrafish DNA sequence from clone CH211-207N2 in linkage group 17, complete sequence Length = 214178 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 ttctaatttgtgtttttctttctta 321 ||||||||||||||||||| ||||| Sbjct: 26578 ttctaatttgtgtttttctatctta 26602
>emb|AL935294.6| Zebrafish DNA sequence from clone CH211-239I4, complete sequence Length = 168302 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 actgaatgaatgattgttgca 98 ||||||||||||||||||||| Sbjct: 16968 actgaatgaatgattgttgca 16988
>emb|AL772342.12| Mouse DNA sequence from clone RP23-105D19 on chromosome 2, complete sequence Length = 206806 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 aaagagcatgtaaagtttcct 54 ||||||||||||||||||||| Sbjct: 154621 aaagagcatgtaaagtttcct 154601
>gb|AC110222.9| Mus musculus chromosome 3, clone RP24-211P23, complete sequence Length = 179958 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 175116 aatttgtgtttttctttctt 175135
>ref|XM_631115.1| Dictyostelium discoideum hypothetical protein (DDB0188426), partial mRNA Length = 774 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 atttgtgtttttctttctta 321 |||||||||||||||||||| Sbjct: 447 atttgtgtttttctttctta 428
>ref|XM_514859.1| PREDICTED: Pan troglodytes T-cell lymphoma invasion and metastasis 1 (LOC458503), mRNA Length = 4297 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 52 gcttttctccataaaactcgtgct 29
>ref|XM_531420.1| PREDICTED: Pan troglodytes T-cell lymphoma invasion and metastasis 1 (LOC473949), mRNA Length = 3901 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 52 gcttttctccataaaactcgtgct 29
>gb|AC132583.3| Mus musculus BAC clone RP24-339P17 from chromosome 3, complete sequence Length = 153573 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 4621 aatttgtgtttttctttctt 4640
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 782800 aatgaaatgaaatggaatgg 782819
>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence Length = 126762 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 91748 aatgaaatgaaatggaatgg 91767
>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence Length = 175586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 109961 aatttgtgtttttctttctt 109942
>gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's Hospital Oakland Research Institute) complete sequence Length = 209654 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 agagcaatacaatgaaatga 547 |||||||||||||||||||| Sbjct: 708 agagcaatacaatgaaatga 689
>ref|XM_458553.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D02651g) partial mRNA Length = 5430 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 tacaatgaaatgaaatggaa 554 |||||||||||||||||||| Sbjct: 2824 tacaatgaaatgaaatggaa 2843
>ref|XM_322233.1| Neurospora crassa OR74A hypothetical protein (NCU00148.1) partial mRNA Length = 1101 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tctcaacctccatctccatg 166 |||||||||||||||||||| Sbjct: 1075 tctcaacctccatctccatg 1056
>ref|XM_951568.1| Neurospora crassa OR74A hypothetical protein (NCU00148.1) partial mRNA Length = 1101 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 tctcaacctccatctccatg 166 |||||||||||||||||||| Sbjct: 1075 tctcaacctccatctccatg 1056
>gb|AC112081.8| Rattus norvegicus 7 BAC CH230-192B8 (Children's Hospital Oakland Research Institute) complete sequence Length = 150311 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 agagcaatacaatgaaatga 547 |||||||||||||||||||| Sbjct: 149019 agagcaatacaatgaaatga 149000
>gb|AC118606.13| Mus musculus chromosome 5, clone RP24-69F9, complete sequence Length = 208384 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 agcaaaacactctagtttct 300 |||||||||||||||||||| Sbjct: 112856 agcaaaacactctagtttct 112875
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tcaatgaaatgtcaggtttc 467 |||||||||||||||||||| Sbjct: 1632095 tcaatgaaatgtcaggtttc 1632076
>gb|AF530594.1| Petunia integrifolia subsp. inflata putative nitrate-induced NOI protein (S1-G261) gene, complete cds Length = 3077 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 536 acaatgaaatgaaatggaatggtg 559 ||||||||| |||||||||||||| Sbjct: 1096 acaatgaaaggaaatggaatggtg 1073
>gb|AC175749.2| Pan troglodytes BAC clone CH251-1124N9 from chromosome y, complete sequence Length = 176979 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 5967 aatgaaatgaaatggaatgg 5986
>gb|AC144861.3| Mus musculus BAC clone RP23-63D4 from chromosome 18, complete sequence Length = 176312 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 acaatgaaatgaaatggaat 555 |||||||||||||||||||| Sbjct: 121900 acaatgaaatgaaatggaat 121881
>gb|AC125098.4| Mus musculus BAC clone RP24-195M13 from chromosome 16, complete sequence Length = 182685 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aaggtcaccgaggaaactgt 251 |||||||||||||||||||| Sbjct: 37915 aaggtcaccgaggaaactgt 37934
>gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome 13, complete sequence Length = 167801 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ctggtgcttgctggtgaatg 517 |||||||||||||||||||| Sbjct: 150037 ctggtgcttgctggtgaatg 150056
>emb|BX897727.17| Zebrafish DNA sequence from clone DKEY-90A13 in linkage group 23, complete sequence Length = 236277 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 caatacaatgaaatgaaatg 551 |||||||||||||||||||| Sbjct: 160264 caatacaatgaaatgaaatg 160245
>gb|AC124708.2| Mus musculus BAC clone RP24-79O16 from 6, complete sequence Length = 171638 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ttttctttcttacatgcact 329 |||||||||||||||||||| Sbjct: 109152 ttttctttcttacatgcact 109133
>gb|AC004986.2| Homo sapiens PAC clone RP5-1166A24 from 7, complete sequence Length = 125290 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 aaaagagaagatccaaagat 215 |||||||||||||||||||| Sbjct: 22166 aaaagagaagatccaaagat 22147
>gb|AC142287.1| Pan troglodytes BAC clone RP43-169H12 from 7, complete sequence Length = 134577 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aaaagagaagatccaaagat 215 |||||||||||||||||||| Sbjct: 99323 aaaagagaagatccaaagat 99342
>gb|AC146788.13| Medicago truncatula clone mth2-11a6, complete sequence Length = 116349 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 agtttctaatttgtgttttt 313 |||||||||||||||||||| Sbjct: 32121 agtttctaatttgtgttttt 32140
>gb|AC162370.4| Mus musculus chromosome 7, clone RP23-32F4, complete sequence Length = 225308 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 116846 aatttgtgtttttctttctt 116865
>gb|AC139525.3| Medicago truncatula clone mth2-26o22, complete sequence Length = 103039 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 agtttctaatttgtgttttt 313 |||||||||||||||||||| Sbjct: 87624 agtttctaatttgtgttttt 87605
>gb|AF254982.4| Homo sapiens chromosome 21 clone CTD-2503J9 map p11-q21.1, complete sequence Length = 211345 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 530 agcaatacaatgaaatgaaatggaatgg 557 ||||||| |||| ||||||||||||||| Sbjct: 155670 agcaatagaatggaatgaaatggaatgg 155697 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 tgaaatgaaatggaatggtg 559 |||||||||||||||||||| Sbjct: 111192 tgaaatgaaatggaatggtg 111211
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 acctttatttgctaactgaa 83 |||||||||||||||||||| Sbjct: 73267 acctttatttgctaactgaa 73286
>emb|AL359012.7| Human DNA sequence from clone RP11-339I10 on chromosome 13 Contains ESTs, STSs and GSSs, complete sequence Length = 176446 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 ttttctccataaaactggtg 503 |||||||||||||||||||| Sbjct: 167156 ttttctccataaaactggtg 167175
>emb|AL356266.9| Human DNA sequence from clone RP11-347N5 on chromosome 13 Contains a ribosomal protein L39 (RPL39) pseudogene and the 3' end of a novel gene, complete sequence Length = 105247 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tcaggtttctacttctacat 478 |||||||||||||||||||| Sbjct: 36872 tcaggtttctacttctacat 36853
>emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast genome Length = 119704 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 aaaagagaaacctttatttgctaa 78 |||||| ||||||||||||||||| Sbjct: 81369 aaaagaaaaacctttatttgctaa 81346
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii Length = 1602771 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 tacaatgaaatgaaatggaa 554 |||||||||||||||||||| Sbjct: 171457 tacaatgaaatgaaatggaa 171438
>emb|AL596167.1| Listeria innocua Clip11262 complete genome, segment 5/12 Length = 253050 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 ccataaaactggtgcttgct 509 |||||||||||||||||||| Sbjct: 22625 ccataaaactggtgcttgct 22606
>gb|AC116904.7| Homo sapiens chromosome 18, clone RP11-1112M8, complete sequence Length = 164394 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 agaaaaagaaatctcaacct 155 |||||||||||||||||||| Sbjct: 156645 agaaaaagaaatctcaacct 156626
>gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, complete sequence Length = 162957 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 tttatttgctaactgaatgaatga 90 |||||| ||||||||||||||||| Sbjct: 74231 tttattggctaactgaatgaatga 74208
>gb|BC070106.1| Homo sapiens cDNA clone IMAGE:30343207 Length = 3729 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aagaaaaagaaatctcaacc 154 |||||||||||||||||||| Sbjct: 1339 aagaaaaagaaatctcaacc 1320
>gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, complete sequence Length = 247058 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcagttccagtggccacctt 115 |||||||||||||||||||| Sbjct: 89035 gcagttccagtggccacctt 89054
>gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, complete sequence Length = 189559 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 29467 aatttgtgtttttctttctt 29486
>gb|AC010573.4| Drosophila melanogaster 3L BAC RP98-2M13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181927 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 28343 aatgaaatgaaatggaatgg 28362
>dbj|AK125748.1| Homo sapiens cDNA FLJ43760 fis, clone TESTI2048105 Length = 2123 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tcaggtttctacttctacat 478 |||||||||||||||||||| Sbjct: 413 tcaggtttctacttctacat 432
>ref|NM_003253.1| Homo sapiens T-cell lymphoma invasion and metastasis 1 (TIAM1), mRNA Length = 5521 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 525 gcttttctccataaaactcgtgct 502
>gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185404 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 15242 aatgaaatgaaatggaatgg 15223
>dbj|AK093430.1| Homo sapiens cDNA FLJ36111 fis, clone TESTI2021999 Length = 1780 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tcaggtttctacttctacat 478 |||||||||||||||||||| Sbjct: 429 tcaggtttctacttctacat 448
>gb|AC009986.10| Homo sapiens chromosome 10 clone RP11-346D6, complete sequence Length = 181733 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ataaaagagaagatccaaagatgt 217 |||||||||||||| ||||||||| Sbjct: 118084 ataaaagagaagattcaaagatgt 118107
>gb|AC026123.24| Homo sapiens 16 BAC RP11-174D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170088 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gaaaaagaaatctcaacctc 156 |||||||||||||||||||| Sbjct: 135510 gaaaaagaaatctcaacctc 135491
>gb|AC096571.1| Homo sapiens BAC clone RP11-395B18 from 4, complete sequence Length = 93638 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 62 aaacctttatttgctaactgaatgaatg 89 |||| |||||||| |||||||||||||| Sbjct: 3356 aaacatttatttgttaactgaatgaatg 3383
>gb|AC097657.3| Homo sapiens BAC clone RP11-362J18 from 4, complete sequence Length = 159934 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aaaagagaaacctttatttg 74 |||||||||||||||||||| Sbjct: 50110 aaaagagaaacctttatttg 50129
>gb|AC183493.1| Brassica oleracea Contig B, complete sequence Length = 284024 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gagaaggtcaccgaggaaac 248 |||||||||||||||||||| Sbjct: 24283 gagaaggtcaccgaggaaac 24302
>dbj|AK147329.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1014A21 product:odd Oz/ten-m homolog 4 (Drosophila), full insert sequence Length = 10634 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 8903 aatttgtgtttttctttctt 8884
>gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162029 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 68 ttatttgctaactgaatgaatgattgtt 95 ||||||| ||||||||||||||| |||| Sbjct: 53075 ttatttggtaactgaatgaatgaatgtt 53048
>dbj|AK147579.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1082H18 product:odd Oz/ten-m homolog 4 (Drosophila), full insert sequence Length = 10933 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 9202 aatttgtgtttttctttctt 9183
>gb|AC022880.10| Homo sapiens chromosome , clone RP11-436P7, complete sequence Length = 166306 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ttatttgctaactgaatgaa 87 |||||||||||||||||||| Sbjct: 106356 ttatttgctaactgaatgaa 106337
>gb|AC090599.4| Homo sapiens chromosome 11, clone RP11-674E24, complete sequence Length = 165287 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 acaatgaaatgaaatggaat 555 |||||||||||||||||||| Sbjct: 26429 acaatgaaatgaaatggaat 26448
>gb|AC090712.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-230F22, complete sequence Length = 138973 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ttttctttcttacatgcact 329 |||||||||||||||||||| Sbjct: 107074 ttttctttcttacatgcact 107093
>gb|AC034199.6| Homo sapiens chromosome 5 clone CTB-114C7, complete sequence Length = 122880 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 84048 aatgaaatgaaatggaatgg 84029
>gb|AC009704.8| Homo sapiens chromosome 18, clone RP11-231E4, complete sequence Length = 178691 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 agaaaaagaaatctcaacct 155 |||||||||||||||||||| Sbjct: 73017 agaaaaagaaatctcaacct 73036
>gb|AC069323.5|AC069323 Homo sapiens BAC clone RP11-1126J10 from Y, complete sequence Length = 39401 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 34750 aatgaaatgaaatggaatgg 34731
>ref|XM_395309.2| PREDICTED: Apis mellifera similar to DNop5 protein (LOC411842), mRNA Length = 1541 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agaagaaaaagaaatctcaa 152 |||||||||||||||||||| Sbjct: 1513 agaagaaaaagaaatctcaa 1532
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 1156660 aatgaaatgaaatggaatgg 1156679
>gb|AC073599.16|AC073599 Mus musculus 7 BAC RP23-8M3 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 226256 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 1015 aatttgtgtttttctttctt 1034
>gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, complete sequence Length = 159831 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 24379 aatgaaatgaaatggaatgg 24398
>gb|AC124446.3| Mus musculus BAC clone RP24-201I19 from chromosome 13, complete sequence Length = 168981 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 ctggtgcttgctggtgaatg 517 |||||||||||||||||||| Sbjct: 48578 ctggtgcttgctggtgaatg 48597
>gb|AC009134.6|AC009134 Homo sapiens chromosome 16 clone RP11-505I1, complete sequence Length = 193236 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 531 gcaatacaatgaaatgaaatggaa 554 ||||| |||||||||||||||||| Sbjct: 93659 gcaatgcaatgaaatgaaatggaa 93636
>gb|AC112933.16| Mus musculus chromosome 5, clone RP24-418J2, complete sequence Length = 172244 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcagttccagtggccacctt 115 |||||||||||||||||||| Sbjct: 120120 gcagttccagtggccacctt 120139
>emb|BX005073.7| Zebrafish DNA sequence from clone CH211-129N18, complete sequence Length = 185849 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 tctaatttgtgtttttcttt 317 |||||||||||||||||||| Sbjct: 7395 tctaatttgtgtttttcttt 7376
>dbj|BS000111.1| Pan troglodytes chromosome 22 clone:PTB-093K04, map 22, complete sequences Length = 184428 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 86241 gcttttctccataaaactcgtgct 86264
>emb|AL807769.8| Zebrafish DNA sequence from clone CH211-197G8, complete sequence Length = 188344 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 caatacaatgaaatgaaatg 551 |||||||||||||||||||| Sbjct: 121577 caatacaatgaaatgaaatg 121558
>gb|AC007344.3|AC007344 Homo sapiens chromosome 16 clone RPCI-11_466G2, complete sequence Length = 180827 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gaaaaagaaatctcaacctc 156 |||||||||||||||||||| Sbjct: 31096 gaaaaagaaatctcaacctc 31077
>gb|U91325.1|HSU91325 Human chromosome 16p13.11 BAC clone CIT987SK-731F11 complete sequence Length = 135046 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 531 gcaatacaatgaaatgaaatggaa 554 ||||| |||||||||||||||||| Sbjct: 39000 gcaatgcaatgaaatgaaatggaa 39023
>gb|AC145042.3| Macropus eugenii clone ME_KBa-289E24, complete sequence Length = 161181 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tcaatgaaatgtcaggtttc 467 |||||||||||||||||||| Sbjct: 155076 tcaatgaaatgtcaggtttc 155057
>emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE Length = 136068 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 133228 aatgaaatgaaatggaatgg 133247
>gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50 of 83 of the complete sequence Length = 278708 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 10940 aatgaaatgaaatggaatgg 10959
>dbj|AP001710.1| Homo sapiens genomic DNA, chromosome 21q, section 54/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 248944 gcttttctccataaaactcgtgct 248967
>dbj|AK122490.1| Mus musculus mRNA for mKIAA1302 protein Length = 5583 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aatttgtgtttttctttctt 320 |||||||||||||||||||| Sbjct: 3832 aatttgtgtttttctttctt 3813
>dbj|AP000247.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP5-871G18, complete sequence Length = 113919 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 103490 gcttttctccataaaactcgtgct 103513
>gb|AC151349.2| Xenopus tropicalis clone ISB-39N3, complete sequence Length = 100129 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gtgtttttctttcttacatg 325 |||||||||||||||||||| Sbjct: 71127 gtgtttttctttcttacatg 71108
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 1156660 aatgaaatgaaatggaatgg 1156679
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aatgaaatgaaatggaatgg 557 |||||||||||||||||||| Sbjct: 95643 aatgaaatgaaatggaatgg 95662
>emb|AL845437.14| Zebrafish DNA sequence from clone DKEY-98J1 in linkage group 23, complete sequence Length = 239084 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 atctcaacctccatctccat 165 |||||||||||||||||||| Sbjct: 232279 atctcaacctccatctccat 232298
>ref|NM_080888.1| Rattus norvegicus BCL2/adenovirus E1B 19 kDa-interacting protein 3-like (Bnip3l), mRNA Length = 3219 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 gtgaatggcatctttccaga 530 |||||||||||||||||||| Sbjct: 1733 gtgaatggcatctttccaga 1714
>gb|U16296.1|HSU16296 Human T-lymphoma invasion and metastasis inducing TIAM1 protein (TIAM1) mRNA, complete cds Length = 5521 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 525 gcttttctccataaaactcgtgct 502
>dbj|AB077364.1| Rattus norvegicus NIP3L mRNA for nineteen kD interacting protein-3 like, complete cds Length = 3219 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 gtgaatggcatctttccaga 530 |||||||||||||||||||| Sbjct: 1733 gtgaatggcatctttccaga 1714
>gb|L11364.1|MUSTSINTR4 Mus musculus thymidylate synthase gene, intron 4 Length = 673 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gcagttccagtggccacctt 115 |||||||||||||||||||| Sbjct: 79 gcagttccagtggccacctt 60
>dbj|AP000209.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone f43D11-119B8, segment 7/12, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 gcttttctccataaaactggtgct 505 |||||||||||||||||| ||||| Sbjct: 22932 gcttttctccataaaactcgtgct 22955 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,203,614 Number of Sequences: 3902068 Number of extensions: 8203614 Number of successful extensions: 203855 Number of sequences better than 10.0: 113 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 202841 Number of HSP's gapped (non-prelim): 1012 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
