ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y209_ENCCU (Q8SWH3) Hypothetical protein ECU02_0090 33 0.80
2HBL1_CAEEL (Q9XYD3) Hunchback-like protein 30 5.2

>Y209_ENCCU (Q8SWH3) Hypothetical protein ECU02_0090|
          Length = 258

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
 Frame = -3

Query: 512 IKESTLVYL*CLFIQVSIFSQLV---------DIFLY-IVGGSIKLNSSSYSYIKCFFIT 363
           I  STL+ L   F+ ++IFS +          D+F Y I+  S  +  +      C FIT
Sbjct: 87  ILHSTLIVLLLAFVIINIFSSITFVTDKWNSEDLFFYSIILPSFFIPPTYLLSTSCDFIT 146

Query: 362 SSFYTTLTSSIMDIFCDLKLLISVL 288
           +SF    T++ ++I  DL +L+S L
Sbjct: 147 TSF----TATGINILVDLMILLSYL 167



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>HBL1_CAEEL (Q9XYD3) Hunchback-like protein|
          Length = 982

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 20/101 (19%), Positives = 45/101 (44%)
 Frame = +2

Query: 14  IHLLGLHNTITHLMNTFSYTGI*QERTELHNRTMAHLLTMEFIPLSYET*VQKFLCCVDL 193
           + L+GL N++   +   +   +     E    +M+H+L    +P S  +          L
Sbjct: 721 VGLMGLRNSVMSPLKCSACDFVASSADEKMRHSMSHILNSSNVPTSIASLYN------SL 774

Query: 194 NVPSRHHRHLLTTFLATEKETKQKTLDHDIRPEQISVTSNH 316
           N+PS  H       +A + +   +++D D++ +  ++T +H
Sbjct: 775 NLPSFSH-------VAPDNDNALESMDCDVKIDDDNITESH 808


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,246,074
Number of Sequences: 219361
Number of extensions: 1410214
Number of successful extensions: 2478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2478
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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