ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3c17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472245.1| Oryza sativa (japonica cultivar-group), predic... 385 e-103
2dbj|AK108218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 347 3e-92
4emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 347 3e-92
5gb|AY105085.1| Zea mays PCO085026 mRNA sequence 240 4e-60
6ref|NM_111055.3| Arabidopsis thaliana unknown protein AT3G01890 ... 54 6e-04
7gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BA... 54 6e-04
8gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC... 54 6e-04
9dbj|AK119040.1| Arabidopsis thaliana At3g01890 mRNA for unknown ... 54 6e-04
10emb|BX842631.1| Neurospora crassa DNA linkage group I BAC contig... 46 0.14
11ref|NM_024396.1| Rattus norvegicus ATP-binding cassette, sub-fam... 42 2.1
12gb|AC158582.2| Mus musculus chromosome 7, clone RP24-173K12, com... 42 2.1
13gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, com... 42 2.1
14ref|XM_982530.1| PREDICTED: Mus musculus RIKEN cDNA 5730590G19 g... 42 2.1
15gb|AC117769.9| Mus musculus chromosome 19, clone RP24-511E21, co... 42 2.1
16ref|NM_029835.1| Mus musculus RIKEN cDNA 5730590G19 gene (573059... 42 2.1
17emb|X75927.2|MMABC2 Mus musculus mRNA for ABC transporter (ABC2 ... 42 2.1
18dbj|AK137597.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 2.1
19dbj|AK169438.1| Mus musculus cDNA, RIKEN full-length enriched li... 42 2.1
20dbj|AK033104.1| Mus musculus 15 days embryo male testis cDNA, RI... 42 2.1
21gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosom... 42 2.1
22emb|AL732557.4| Mouse DNA sequence from clone RP23-47P18 on chro... 42 2.1
23ref|NM_007379.1| Mus musculus ATP-binding cassette, sub-family A... 42 2.1
24gb|BC058634.1| Mus musculus RIKEN cDNA 5730590G19 gene, mRNA (cD... 42 2.1
25dbj|AB037937.1| Rattus norvegicus mRNA for ABC2, complete cds 42 2.1
26gb|AC164984.2| Mus musculus BAC clone RP23-18I3 from chromosome ... 40 8.3
27gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete se... 40 8.3
28gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete se... 40 8.3
29gb|AY496119.1| Capsicum annuum putative flavin-containing monoox... 40 8.3
30gb|AC004382.1|HUAC004382 Homo sapiens Chromosome 16 BAC clone CI... 40 8.3
31gb|AC092648.3| Homo sapiens BAC clone RP11-421N10 from 7, comple... 40 8.3
32emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 8.3
33emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, c... 40 8.3
34gb|AC114297.2| Homo sapiens chromosome 5 clone RP11-124B7, compl... 40 8.3
35emb|BX823034.1|CNS0A62U Arabidopsis thaliana Full-length cDNA Co... 40 8.3
36gb|AC009052.8| Homo sapiens chromosome 16 clone RP11-250E14, com... 40 8.3
37gb|AF248080.1|AF248080 Flaveria trinervia phosphoenolpyruvate ca... 40 8.3
38emb|AL133500.4|HSP12 Homo sapiens chromosome X sequence from BA... 40 8.3
39gb|AF069299.1|F6N15 Arabidopsis thaliana BAC F6N15 40 8.3
40emb|AL671733.6| Mouse DNA sequence from clone RP23-83I22 on chro... 40 8.3 
>ref|XM_472245.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1539

 Score =  385 bits (194), Expect = e-103
 Identities = 275/302 (91%)
 Strand = Plus / Minus

                                                                        
Query: 251  tatcttataacagcatcctcaacccatggctggttatagaagtccgcacgtctttccctt 310
            |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct: 1478 tatcttatgacagcatcctcaacccatggttgattatagaagtctgcacgtctttctctt 1419

                                                                        
Query: 311  tcaatattcctactcgcttcaccagcaacaagcttcaaatctttactctgggatgctatc 370
            |||||||||||| | ||||| || || |  |||||||||||||||||||| || ||||||
Sbjct: 1418 tcaatattcctatttgcttctcctgcgatcagcttcaaatctttactctgagacgctatc 1359

                                                                        
Query: 371  aacgcattaatgaactccactggggactggctgaacccaaggaagaacgccctcctccta 430
            |  ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| 
Sbjct: 1358 agtgcattgatgaactccactggggactggctgaaaccaaggaagaatgccctcctcctg 1299

                                                                        
Query: 431  cgatgctcgtggatcttcttgattgaagcagatatcacctcatcacatgcctcaatgtcc 490
            || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1298 cggtgctcatggatcttcttgatcgaagcagatatcacctcatcacatgcctcaatgtcc 1239

                                                                        
Query: 491  ttgtgcttctcagtattggcaagaaatgctgtcatctccttctgcagtgggaaaggaaca 550
            |||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 1238 ttgtgcttctcagtgttggcaagaaatgcagacatctccttctgcagagggaaaggaaca 1179

              
Query: 551  tc 552
            ||
Sbjct: 1178 tc 1177
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>dbj|AK108218.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-E07, full
           insert sequence
          Length = 1132

 Score =  385 bits (194), Expect = e-103
 Identities = 275/302 (91%)
 Strand = Plus / Minus

                                                                       
Query: 251 tatcttataacagcatcctcaacccatggctggttatagaagtccgcacgtctttccctt 310
           |||||||| |||||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct: 982 tatcttatgacagcatcctcaacccatggttgattatagaagtctgcacgtctttctctt 923

                                                                       
Query: 311 tcaatattcctactcgcttcaccagcaacaagcttcaaatctttactctgggatgctatc 370
           |||||||||||| | ||||| || || |  |||||||||||||||||||| || ||||||
Sbjct: 922 tcaatattcctatttgcttctcctgcgatcagcttcaaatctttactctgagacgctatc 863

                                                                       
Query: 371 aacgcattaatgaactccactggggactggctgaacccaaggaagaacgccctcctccta 430
           |  ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| 
Sbjct: 862 agtgcattgatgaactccactggggactggctgaaaccaaggaagaatgccctcctcctg 803

                                                                       
Query: 431 cgatgctcgtggatcttcttgattgaagcagatatcacctcatcacatgcctcaatgtcc 490
           || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 802 cggtgctcatggatcttcttgatcgaagcagatatcacctcatcacatgcctcaatgtcc 743

                                                                       
Query: 491 ttgtgcttctcagtattggcaagaaatgctgtcatctccttctgcagtgggaaaggaaca 550
           |||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 742 ttgtgcttctcagtgttggcaagaaatgcagacatctccttctgcagagggaaaggaaca 683

             
Query: 551 tc 552
           ||
Sbjct: 682 tc 681
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  347 bits (175), Expect = 3e-92
 Identities = 253/279 (90%)
 Strand = Plus / Minus

                                                                            
Query: 274      ccatggctggttatagaagtccgcacgtctttccctttcaatattcctactcgcttcacc 333
                |||||| || ||||||||||| ||||||||||| ||||||||||||||| | ||||| ||
Sbjct: 18748297 ccatggttgattatagaagtctgcacgtctttctctttcaatattcctatttgcttctcc 18748238

                                                                            
Query: 334      agcaacaagcttcaaatctttactctgggatgctatcaacgcattaatgaactccactgg 393
                 || |  |||||||||||||||||||| || |||||||  ||||| ||||||||||||||
Sbjct: 18748237 tgcgatcagcttcaaatctttactctgagacgctatcagtgcattgatgaactccactgg 18748178

                                                                            
Query: 394      ggactggctgaacccaaggaagaacgccctcctcctacgatgctcgtggatcttcttgat 453
                |||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||
Sbjct: 18748177 ggactggctgaaaccaaggaagaatgccctcctcctgcggtgctcatggatcttcttgat 18748118

                                                                            
Query: 454      tgaagcagatatcacctcatcacatgcctcaatgtccttgtgcttctcagtattggcaag 513
                 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 18748117 cgaagcagatatcacctcatcacatgcctcaatgtccttgtgcttctcagtgttggcaag 18748058

                                                       
Query: 514      aaatgctgtcatctccttctgcagtgggaaaggaacatc 552
                |||||| | ||||||||||||||| ||||||||||||||
Sbjct: 18748057 aaatgcagacatctccttctgcagagggaaaggaacatc 18748019



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 251      tatcttataacagcatcctcaaccc 275
                |||||||| ||||||||||||||||
Sbjct: 18748424 tatcttatgacagcatcctcaaccc 18748400
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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
             complete sequence
          Length = 160456

 Score =  347 bits (175), Expect = 3e-92
 Identities = 253/279 (90%)
 Strand = Plus / Minus

                                                                         
Query: 274   ccatggctggttatagaagtccgcacgtctttccctttcaatattcctactcgcttcacc 333
             |||||| || ||||||||||| ||||||||||| ||||||||||||||| | ||||| ||
Sbjct: 97460 ccatggttgattatagaagtctgcacgtctttctctttcaatattcctatttgcttctcc 97401

                                                                         
Query: 334   agcaacaagcttcaaatctttactctgggatgctatcaacgcattaatgaactccactgg 393
              || |  |||||||||||||||||||| || |||||||  ||||| ||||||||||||||
Sbjct: 97400 tgcgatcagcttcaaatctttactctgagacgctatcagtgcattgatgaactccactgg 97341

                                                                         
Query: 394   ggactggctgaacccaaggaagaacgccctcctcctacgatgctcgtggatcttcttgat 453
             |||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||
Sbjct: 97340 ggactggctgaaaccaaggaagaatgccctcctcctgcggtgctcatggatcttcttgat 97281

                                                                         
Query: 454   tgaagcagatatcacctcatcacatgcctcaatgtccttgtgcttctcagtattggcaag 513
              |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 97280 cgaagcagatatcacctcatcacatgcctcaatgtccttgtgcttctcagtgttggcaag 97221

                                                    
Query: 514   aaatgctgtcatctccttctgcagtgggaaaggaacatc 552
             |||||| | ||||||||||||||| ||||||||||||||
Sbjct: 97220 aaatgcagacatctccttctgcagagggaaaggaacatc 97182



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 251   tatcttataacagcatcctcaaccc 275
             |||||||| ||||||||||||||||
Sbjct: 97587 tatcttatgacagcatcctcaaccc 97563
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>gb|AY105085.1| Zea mays PCO085026 mRNA sequence
          Length = 542

 Score =  240 bits (121), Expect = 4e-60
 Identities = 208/237 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 cggtttacgattcaaatatcttataacagcatcctcaacccatggctggttatagaagtc 294
           |||||| || ||||| ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 251 cggtttgcggttcaagtatcttataacggcgtcttcaacccatggttggttatagaagtc 192

                                                                       
Query: 295 cgcacgtctttccctttcaatattcctactcgcttcaccagcaacaagcttcaaatcttt 354
            |||||||||||  | ||||| |||||| |||| || |||||||| ||||| ||||||||
Sbjct: 191 ggcacgtctttctttctcaatgttcctattcgcctcgccagcaaccagctttaaatcttt 132

                                                                       
Query: 355 actctgggatgctatcaacgcattaatgaactccactggggactggctgaacccaaggaa 414
            ||||| || |||||||  ||||| |||||||||||||||||||||||||| || |||||
Sbjct: 131 gctctgagaagctatcagagcattgatgaactccactggggactggctgaaacccaggaa 72

                                                                    
Query: 415 gaacgccctcctcctacgatgctcgtggatcttcttgattgaagcagatatcacctc 471
           ||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct: 71  gaaggccctcctcctgcgatgctcatggatcttcttgatcgaagcagatatcacctc 15



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 cctcaagaaccaccagcacc 213
           ||||||||||||||||||||
Sbjct: 292 cctcaagaaccaccagcacc 273
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>ref|NM_111055.3| Arabidopsis thaliana unknown protein AT3G01890 mRNA, complete cds
          Length = 1898

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                        
Query: 326  gcttcaccagcaacaagcttcaaatctttactctgggatgctatcaacgcattaatgaac 385
            ||||| || ||||||||||||| ||||||  |||| ||| | ||||| |||||  |||| 
Sbjct: 1591 gcttctcctgcaacaagcttcagatctttggtctgagattccatcaaggcattggtgaat 1532

                                                                       
Query: 386  tccactggggactggctgaacccaaggaagaacgccctcctcctacgatgctcgtggat 444
            ||||| || |||||||| ||||| | ||| |||||||  ||||| |  |||||||||||
Sbjct: 1531 tccaccggtgactggctaaaccctaagaaaaacgcccgtctccttctgtgctcgtggat 1473
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>gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete
             sequence
          Length = 103960

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 96/119 (80%)
 Strand = Plus / Plus

                                                                         
Query: 326   gcttcaccagcaacaagcttcaaatctttactctgggatgctatcaacgcattaatgaac 385
             ||||| || ||||||||||||| ||||||  |||| ||| | ||||| |||||  |||| 
Sbjct: 97732 gcttctcctgcaacaagcttcagatctttggtctgagattccatcaaggcattggtgaat 97791

                                                                        
Query: 386   tccactggggactggctgaacccaaggaagaacgccctcctcctacgatgctcgtggat 444
             ||||| || |||||||| ||||| | ||| |||||||  ||||| |  |||||||||||
Sbjct: 97792 tccaccggtgactggctaaaccctaagaaaaacgcccgtctccttctgtgctcgtggat 97850
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>gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence,
             complete sequence
          Length = 89154

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                         
Query: 326   gcttcaccagcaacaagcttcaaatctttactctgggatgctatcaacgcattaatgaac 385
             ||||| || ||||||||||||| ||||||  |||| ||| | ||||| |||||  |||| 
Sbjct: 56302 gcttctcctgcaacaagcttcagatctttggtctgagattccatcaaggcattggtgaat 56243

                                                                        
Query: 386   tccactggggactggctgaacccaaggaagaacgccctcctcctacgatgctcgtggat 444
             ||||| || |||||||| ||||| | ||| |||||||  ||||| |  |||||||||||
Sbjct: 56242 tccaccggtgactggctaaaccctaagaaaaacgcccgtctccttctgtgctcgtggat 56184
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>dbj|AK119040.1| Arabidopsis thaliana At3g01890 mRNA for unknown protein, complete
            cds, clone: RAFL21-36-K20
          Length = 1898

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                        
Query: 326  gcttcaccagcaacaagcttcaaatctttactctgggatgctatcaacgcattaatgaac 385
            ||||| || ||||||||||||| ||||||  |||| ||| | ||||| |||||  |||| 
Sbjct: 1591 gcttctcctgcaacaagcttcagatctttggtctgagattccatcaaggcattggtgaat 1532

                                                                       
Query: 386  tccactggggactggctgaacccaaggaagaacgccctcctcctacgatgctcgtggat 444
            ||||| || |||||||| ||||| | ||| |||||||  ||||| |  |||||||||||
Sbjct: 1531 tccaccggtgactggctaaaccctaagaaaaacgcccgtctccttctgtgctcgtggat 1473
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>emb|BX842631.1| Neurospora crassa DNA linkage group I BAC contig B1O14
          Length = 119219

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 186   aatcttctcctcaagaaccacca 208
             |||||||||||||||||||||||
Sbjct: 47074 aatcttctcctcaagaaccacca 47052
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>ref|NM_024396.1| Rattus norvegicus ATP-binding cassette, sub-family A (ABC1), member 2
            (Abca2), mRNA
          Length = 8040

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 386  tccactggggactggctgaac 406
            |||||||||||||||||||||
Sbjct: 2724 tccactggggactggctgaac 2704
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>gb|AC158582.2| Mus musculus chromosome 7, clone RP24-173K12, complete sequence
          Length = 169636

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   ccaaggaagaacgccctcctc 427
             |||||||||||||||||||||
Sbjct: 61939 ccaaggaagaacgccctcctc 61919
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>gb|AC120164.7| Mus musculus chromosome 19, clone RP24-470C3, complete sequence
          Length = 164107

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 339    caagcttcaaatctttactct 359
              |||||||||||||||||||||
Sbjct: 131688 caagcttcaaatctttactct 131708
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>ref|XM_982530.1| PREDICTED: Mus musculus RIKEN cDNA 5730590G19 gene, transcript
            variant 2 (5730590G19Rik), mRNA
          Length = 6585

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 407  ccaaggaagaacgccctcctc 427
            |||||||||||||||||||||
Sbjct: 4387 ccaaggaagaacgccctcctc 4407
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>gb|AC117769.9| Mus musculus chromosome 19, clone RP24-511E21, complete sequence
          Length = 218248

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 339    caagcttcaaatctttactct 359
              |||||||||||||||||||||
Sbjct: 168906 caagcttcaaatctttactct 168886
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>ref|NM_029835.1| Mus musculus RIKEN cDNA 5730590G19 gene (5730590G19Rik), mRNA
          Length = 7213

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 407  ccaaggaagaacgccctcctc 427
            |||||||||||||||||||||
Sbjct: 5664 ccaaggaagaacgccctcctc 5684
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>emb|X75927.2|MMABC2 Mus musculus mRNA for ABC transporter (ABC2 gene)
          Length = 7629

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 386  tccactggggactggctgaac 406
            |||||||||||||||||||||
Sbjct: 2657 tccactggggactggctgaac 2637
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>dbj|AK137597.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830163L23 product:hypothetical protein,
            full insert sequence
          Length = 5068

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 407  ccaaggaagaacgccctcctc 427
            |||||||||||||||||||||
Sbjct: 3547 ccaaggaagaacgccctcctc 3567
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>dbj|AK169438.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M421501E24 product:ATP-binding cassette, sub-family
            A (ABC1), member 2, full insert sequence
          Length = 8059

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 386  tccactggggactggctgaac 406
            |||||||||||||||||||||
Sbjct: 2748 tccactggggactggctgaac 2728
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>dbj|AK033104.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:8030425L21 product:hypothetical
            protein, full insert sequence
          Length = 1749

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 407  ccaaggaagaacgccctcctc 427
            |||||||||||||||||||||
Sbjct: 1210 ccaaggaagaacgccctcctc 1230
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>gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosome 9, complete sequence
          Length = 219799

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 523    catctccttctgcagtgggaa 543
              |||||||||||||||||||||
Sbjct: 151673 catctccttctgcagtgggaa 151693
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>emb|AL732557.4| Mouse DNA sequence from clone RP23-47P18 on chromosome 2, complete
              sequence
          Length = 180136

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 386    tccactggggactggctgaac 406
              |||||||||||||||||||||
Sbjct: 111337 tccactggggactggctgaac 111317
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>ref|NM_007379.1| Mus musculus ATP-binding cassette, sub-family A (ABC1), member 2
            (Abca2), mRNA
          Length = 7629

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 386  tccactggggactggctgaac 406
            |||||||||||||||||||||
Sbjct: 2657 tccactggggactggctgaac 2637
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>gb|BC058634.1| Mus musculus RIKEN cDNA 5730590G19 gene, mRNA (cDNA clone
           IMAGE:6400795), complete cds
          Length = 2422

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 407 ccaaggaagaacgccctcctc 427
           |||||||||||||||||||||
Sbjct: 876 ccaaggaagaacgccctcctc 896
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>dbj|AB037937.1| Rattus norvegicus mRNA for ABC2, complete cds
          Length = 8040

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 386  tccactggggactggctgaac 406
            |||||||||||||||||||||
Sbjct: 2724 tccactggggactggctgaac 2704
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>gb|AC164984.2| Mus musculus BAC clone RP23-18I3 from chromosome 9, complete sequence
          Length = 214188

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 398    tggctgaacccaaggaagaacgcc 421
              ||||| ||||||||||||||||||
Sbjct: 139408 tggctaaacccaaggaagaacgcc 139431
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>gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete sequence
          Length = 184109

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   catctccttctgcagtggga 542
             ||||||||||||||||||||
Sbjct: 91353 catctccttctgcagtggga 91334
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>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence
          Length = 181178

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 523    catctccttctgcagtggga 542
              ||||||||||||||||||||
Sbjct: 103320 catctccttctgcagtggga 103339
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>gb|AY496119.1| Capsicum annuum putative flavin-containing monooxygenase mRNA,
           complete sequence
          Length = 681

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 562 atcataacaggcaccttgag 581
           ||||||||||||||||||||
Sbjct: 632 atcataacaggcaccttgag 651
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>gb|AC004382.1|HUAC004382 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-152E5, complete
             sequence
          Length = 217873

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   ccaccagcacctgggccatc 222
             ||||||||||||||||||||
Sbjct: 10664 ccaccagcacctgggccatc 10645
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>gb|AC092648.3| Homo sapiens BAC clone RP11-421N10 from 7, complete sequence
          Length = 171881

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 248    aaatatcttataacagcatcctca 271
              ||||||||||||||| ||||||||
Sbjct: 167272 aaatatcttataacatcatcctca 167295
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    catcactgccaccaggcggt 238
              ||||||||||||||||||||
Sbjct: 333601 catcactgccaccaggcggt 333582
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>emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1
          Length = 197119

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    acaaggagggataacatata 31
             ||||||||||||||||||||
Sbjct: 86282 acaaggagggataacatata 86301
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>gb|AC114297.2| Homo sapiens chromosome 5 clone RP11-124B7, complete sequence
          Length = 158406

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 531   tctgcagtgggaaaggaacatcta 554
             |||||||||||||| |||||||||
Sbjct: 58197 tctgcagtgggaaatgaacatcta 58220
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>emb|BX823034.1|CNS0A62U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB82ZF05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1868

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 470  tcatcacatgcctcaatgtccttgtgcttctc 501
            ||||||||||||||||| || |||| ||||||
Sbjct: 1432 tcatcacatgcctcaatctctttgttcttctc 1401
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>gb|AC009052.8| Homo sapiens chromosome 16 clone RP11-250E14, complete sequence
          Length = 200557

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   ccaccagcacctgggccatc 222
             ||||||||||||||||||||
Sbjct: 58352 ccaccagcacctgggccatc 58333
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>gb|AF248080.1|AF248080 Flaveria trinervia phosphoenolpyruvate carboxylase (ppcC) mRNA,
            complete cds
          Length = 3372

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  caagaatcttctcctcaaga 201
            ||||||||||||||||||||
Sbjct: 2753 caagaatcttctcctcaaga 2772
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>emb|AL133500.4|HSP12 Homo sapiens  chromosome X sequence from BAC CEPHB328P12 map Xq13 region
              PHKA1-DXS227, complete sequence
          Length = 201387

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    attggcaagaaatgctgtca 524
              ||||||||||||||||||||
Sbjct: 144641 attggcaagaaatgctgtca 144622
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>gb|AF069299.1|F6N15 Arabidopsis thaliana BAC F6N15
          Length = 95643

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    acaaggagggataacatata 31
             ||||||||||||||||||||
Sbjct: 81144 acaaggagggataacatata 81163
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>emb|AL671733.6| Mouse DNA sequence from clone RP23-83I22 on chromosome 4, complete
              sequence
          Length = 186686

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     catttgagcagacaaaggag 73
              ||||||||||||||||||||
Sbjct: 161928 catttgagcagacaaaggag 161909


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,692,999
Number of Sequences: 3902068
Number of extensions: 5692999
Number of successful extensions: 109890
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109768
Number of HSP's gapped (non-prelim): 122
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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