ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3c15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Plus Query: 301 ctcaaatgagcgaatcggacttggcaggcaatcttctgtagaagttgaacgggacagagg 360 |||||| |||| ||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 64044 ctcaaaggagcatatcagacttggcaggcaatctcctgtagaagttgaaaggcacagagg 64103 Query: 361 gcatcctgctgcggaaccggggatggcgcagcaagtagagcatagtgatgaccagcaaaa 420 |||||||||||||||||||||| ||||||| || ||| ||||| | || ||||||| || Sbjct: 64104 gcatcctgctgcggaaccgggggtggcgcaacaggtatagcattgcaataaccagcagaa 64163 Query: 421 cctggaacggcgtcacgtacagcacgatggccacgaccagggacaggaatatgaagatgg 480 ||||||| || ||||| |||||||| ||||| || |||||||||| |||||||||||||| Sbjct: 64164 cctggaatggtgtcacatacagcacaatggcaacaaccagggacaagaatatgaagatgg 64223 Query: 481 cggtggcgcgag 492 ||||||| |||| Sbjct: 64224 cggtggcccgag 64235 Score = 56.0 bits (28), Expect = 1e-04 Identities = 80/96 (83%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 174 tgcctctaattaatcaactcaccaagtatattcacatctgatctgaagcttaccag-aag 232 ||||||||||| | |||||| ||||||||||||||||||||||| ||| | ||| | | Sbjct: 63915 tgcctctaatttaccaactccttaagtatattcacatctgatctgatgctaatcagtagg 63974 Query: 233 gaacagaatgagagagggagacaatgttacagggtt 268 |||| ||||| |||| || |||| ||||||||||| Sbjct: 63975 gaactgaatggaagagagaaacaaagttacagggtt 64010
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Plus Query: 301 ctcaaatgagcgaatcggacttggcaggcaatcttctgtagaagttgaacgggacagagg 360 |||||| |||| ||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 20937266 ctcaaaggagcatatcagacttggcaggcaatctcctgtagaagttgaaaggcacagagg 20937325 Query: 361 gcatcctgctgcggaaccggggatggcgcagcaagtagagcatagtgatgaccagcaaaa 420 |||||||||||||||||||||| ||||||| || ||| ||||| | || ||||||| || Sbjct: 20937326 gcatcctgctgcggaaccgggggtggcgcaacaggtatagcattgcaataaccagcagaa 20937385 Query: 421 cctggaacggcgtcacgtacagcacgatggccacgaccagggacaggaatatgaagatgg 480 ||||||| || ||||| |||||||| ||||| || |||||||||| |||||||||||||| Sbjct: 20937386 cctggaatggtgtcacatacagcacaatggcaacaaccagggacaagaatatgaagatgg 20937445 Query: 481 cggtggcgcgag 492 ||||||| |||| Sbjct: 20937446 cggtggcccgag 20937457 Score = 56.0 bits (28), Expect = 1e-04 Identities = 80/96 (83%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 174 tgcctctaattaatcaactcaccaagtatattcacatctgatctgaagcttaccag-aag 232 ||||||||||| | |||||| ||||||||||||||||||||||| ||| | ||| | | Sbjct: 20937137 tgcctctaatttaccaactccttaagtatattcacatctgatctgatgctaatcagtagg 20937196 Query: 233 gaacagaatgagagagggagacaatgttacagggtt 268 |||| ||||| |||| || |||| ||||||||||| Sbjct: 20937197 gaactgaatggaagagagaaacaaagttacagggtt 20937232
>dbj|AK103559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132J08, full insert sequence Length = 2918 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Minus Query: 301 ctcaaatgagcgaatcggacttggcaggcaatcttctgtagaagttgaacgggacagagg 360 |||||| |||| ||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 2548 ctcaaaggagcatatcagacttggcaggcaatctcctgtagaagttgaaaggcacagagg 2489 Query: 361 gcatcctgctgcggaaccggggatggcgcagcaagtagagcatagtgatgaccagcaaaa 420 |||||||||||||||||||||| ||||||| || ||| ||||| | || ||||||| || Sbjct: 2488 gcatcctgctgcggaaccgggggtggcgcaacaggtatagcattgcaataaccagcagaa 2429 Query: 421 cctggaacggcgtcacgtacagcacgatggccacgaccagggacaggaatatgaagatgg 480 ||||||| || ||||| |||||||| ||||| || |||||||||| |||||||||||||| Sbjct: 2428 cctggaatggtgtcacatacagcacaatggcaacaaccagggacaagaatatgaagatgg 2369 Query: 481 cggtggcgcgag 492 ||||||| |||| Sbjct: 2368 cggtggcccgag 2357 Score = 56.0 bits (28), Expect = 1e-04 Identities = 80/96 (83%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 174 tgcctctaattaatcaactcaccaagtatattcacatctgatctgaagcttaccag-aag 232 ||||||||||| | |||||| ||||||||||||||||||||||| ||| | ||| | | Sbjct: 2677 tgcctctaatttaccaactccttaagtatattcacatctgatctgatgctaatcagtagg 2618 Query: 233 gaacagaatgagagagggagacaatgttacagggtt 268 |||| ||||| |||| || |||| ||||||||||| Sbjct: 2617 gaactgaatggaagagagaaacaaagttacagggtt 2582
>dbj|AK069203.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D03, full insert sequence Length = 2437 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Minus Query: 301 ctcaaatgagcgaatcggacttggcaggcaatcttctgtagaagttgaacgggacagagg 360 |||||| |||| ||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 2011 ctcaaaggagcatatcagacttggcaggcaatctcctgtagaagttgaaaggcacagagg 1952 Query: 361 gcatcctgctgcggaaccggggatggcgcagcaagtagagcatagtgatgaccagcaaaa 420 |||||||||||||||||||||| ||||||| || ||| ||||| | || ||||||| || Sbjct: 1951 gcatcctgctgcggaaccgggggtggcgcaacaggtatagcattgcaataaccagcagaa 1892 Query: 421 cctggaacggcgtcacgtacagcacgatggccacgaccagggacaggaatatgaagatgg 480 ||||||| || ||||| |||||||| ||||| || |||||||||| |||||||||||||| Sbjct: 1891 cctggaatggtgtcacatacagcacaatggcaacaaccagggacaagaatatgaagatgg 1832 Query: 481 cggtggcgcgag 492 ||||||| |||| Sbjct: 1831 cggtggcccgag 1820 Score = 56.0 bits (28), Expect = 1e-04 Identities = 80/96 (83%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 174 tgcctctaattaatcaactcaccaagtatattcacatctgatctgaagcttaccag-aag 232 ||||||||||| | |||||| ||||||||||||||||||||||| ||| | ||| | | Sbjct: 2140 tgcctctaatttaccaactccttaagtatattcacatctgatctgatgctaatcagtagg 2081 Query: 233 gaacagaatgagagagggagacaatgttacagggtt 268 |||| ||||| |||| || |||| ||||||||||| Sbjct: 2080 gaactgaatggaagagagaaacaaagttacagggtt 2045
>dbj|AK059651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C07, full insert sequence Length = 1820 Score = 190 bits (96), Expect = 3e-45 Identities = 168/192 (87%) Strand = Plus / Minus Query: 301 ctcaaatgagcgaatcggacttggcaggcaatcttctgtagaagttgaacgggacagagg 360 |||||| |||| ||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct: 1462 ctcaaaggagcatatcagacttggcaggcaatctcctgtagaagttgaaaggcacagagg 1403 Query: 361 gcatcctgctgcggaaccggggatggcgcagcaagtagagcatagtgatgaccagcaaaa 420 |||||||||||||||||||||| ||||||| || ||| ||||| | || ||||||| || Sbjct: 1402 gcatcctgctgcggaaccgggggtggcgcaacaggtatagcattgcaataaccagcagaa 1343 Query: 421 cctggaacggcgtcacgtacagcacgatggccacgaccagggacaggaatatgaagatgg 480 ||||||| || ||||| |||||||| ||||| || |||||||||| |||||||||||||| Sbjct: 1342 cctggaatggtgtcacatacagcacaatggcaacaaccagggacaagaatatgaagatgg 1283 Query: 481 cggtggcgcgag 492 ||||||| |||| Sbjct: 1282 cggtggcccgag 1271 Score = 56.0 bits (28), Expect = 1e-04 Identities = 80/96 (83%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 174 tgcctctaattaatcaactcaccaagtatattcacatctgatctgaagcttaccag-aag 232 ||||||||||| | |||||| ||||||||||||||||||||||| ||| | ||| | | Sbjct: 1591 tgcctctaatttaccaactccttaagtatattcacatctgatctgatgctaatcagtagg 1532 Query: 233 gaacagaatgagagagggagacaatgttacagggtt 268 |||| ||||| |||| || |||| ||||||||||| Sbjct: 1531 gaactgaatggaagagagaaacaaagttacagggtt 1496
>ref|XM_475267.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2415 Score = 188 bits (95), Expect = 1e-44 Identities = 155/175 (88%) Strand = Plus / Minus Query: 318 gacttggcaggcaatcttctgtagaagttgaacgggacagagggcatcctgctgcggaac 377 ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| Sbjct: 2399 gacttggcaggcaatctcctgtagaagttgaaaggcacagagggcatcctgctgcggaac 2340 Query: 378 cggggatggcgcagcaagtagagcatagtgatgaccagcaaaacctggaacggcgtcacg 437 ||||| ||||||| || ||| ||||| | || ||||||| ||||||||| || ||||| Sbjct: 2339 cgggggtggcgcaacaggtatagcattgcaataaccagcagaacctggaatggtgtcaca 2280 Query: 438 tacagcacgatggccacgaccagggacaggaatatgaagatggcggtggcgcgag 492 |||||||| ||||| || |||||||||| ||||||||||||||||||||| |||| Sbjct: 2279 tacagcacaatggcaacaaccagggacaagaatatgaagatggcggtggcccgag 2225
>gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence Length = 230349 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 114 ctaactataagcagacagtaaaaca 138 ||||||||||||||||||||||||| Sbjct: 15422 ctaactataagcagacagtaaaaca 15398
>gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence Length = 154447 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 114 ctaactataagcagacagtaaaaca 138 ||||||||||||||||||||||||| Sbjct: 58700 ctaactataagcagacagtaaaaca 58676
>gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence Length = 160367 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 114 ctaactataagcagacagtaaaaca 138 ||||||||||||||||||||||||| Sbjct: 146699 ctaactataagcagacagtaaaaca 146723
>gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence Length = 174768 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 114 ctaactataagcagacagtaaaaca 138 ||||||||||||||||||||||||| Sbjct: 143883 ctaactataagcagacagtaaaaca 143907
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 133 aaaacatataaaaccgacacctt 155 ||||||||||||||||||||||| Sbjct: 6722108 aaaacatataaaaccgacacctt 6722086
>dbj|AP005719.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1130E10 Length = 151606 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 133 aaaacatataaaaccgacacctt 155 ||||||||||||||||||||||| Sbjct: 115107 aaaacatataaaaccgacacctt 115085
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0592C06 Length = 160071 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 133 aaaacatataaaaccgacacctt 155 ||||||||||||||||||||||| Sbjct: 16242 aaaacatataaaaccgacacctt 16220
>emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chromosome 4 Contains a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, a novel gene and the 3' end of a novel gene, complete sequence Length = 218922 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 228 agaaggaacagaatgagagagggaga 253 ||||||||||||| |||||||||||| Sbjct: 181686 agaaggaacagaaggagagagggaga 181711
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aacatataaaaccgacacctt 155 ||||||||||||||||||||| Sbjct: 18254865 aacatataaaaccgacacctt 18254845
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aacatataaaaccgacacctt 155 ||||||||||||||||||||| Sbjct: 21296 aacatataaaaccgacacctt 21276
>gb|AC163735.5| Pan troglodytes BAC clone CH251-576O12 from chromosome unknown, complete sequence Length = 214676 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 aagcagacagtaaaacatataaaac 146 ||||||||||||||||| ||||||| Sbjct: 62985 aagcagacagtaaaacagataaaac 63009
>gb|AC161625.5| Pan troglodytes BAC clone CH251-98N20 from chromosome unknown, complete sequence Length = 179977 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ggaacagaatgagagagggag 252 ||||||||||||||||||||| Sbjct: 43107 ggaacagaatgagagagggag 43087
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aacatataaaaccgacacctt 155 ||||||||||||||||||||| Sbjct: 18248406 aacatataaaaccgacacctt 18248386
>gb|AY902363.1|AY902362S2 Branchiostoma floridae neurotrophic tyrosine kinase receptor precursor (AmphiTrk) gene, exons 2 through 12 Length = 9340 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 gtacagcacgatggccacgac 457 ||||||||||||||||||||| Sbjct: 4931 gtacagcacgatggccacgac 4911
>gb|AY902361.1| Branchiostoma floridae neurotrophic tyrosine kinase receptor precursor (AmphiTrk) mRNA, complete cds Length = 4150 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 gtacagcacgatggccacgac 457 ||||||||||||||||||||| Sbjct: 1642 gtacagcacgatggccacgac 1622
>gb|AC009158.7| Homo sapiens chromosome 16 clone RP11-67I10, complete sequence Length = 161248 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 ggaacagaatgagagagggag 252 ||||||||||||||||||||| Sbjct: 96424 ggaacagaatgagagagggag 96404
>gb|AF180942.1|ATRPP5LE2 Arabidopsis thaliana RPP5 disease resistance locus, main contig Length = 91660 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 181 aattaatcaactcaccaagtatattcaca 209 ||||||||||||||||||| |||| |||| Sbjct: 44965 aattaatcaactcaccaagaatatacaca 44993
>gb|AC068193.7| Homo sapiens BAC clone RP11-103P16 from 2, complete sequence Length = 170059 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 gaatgagagagggagacaatg 258 ||||||||||||||||||||| Sbjct: 145864 gaatgagagagggagacaatg 145884
>gb|AC125212.3| Mus musculus BAC clone RP23-131D6 from chromosome 5, complete sequence Length = 215413 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 229 gaaggaacagaatgagagagggaga 253 ||||||||||||||||||| ||||| Sbjct: 165947 gaaggaacagaatgagagatggaga 165971
>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1 (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5 (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb) gene, complete cds; PILRP4 (Pilrp4) pseudogene, complete sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3 (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1) pseudogenes, complete sequence; and CYP3A13 (Cyp3a13) and GJE1 (Gje1) genes, complete cds Length = 194414 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 229 gaaggaacagaatgagagagggaga 253 ||||||||||||||||||| ||||| Sbjct: 124140 gaaggaacagaatgagagatggaga 124116
>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence Length = 203821 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 229 gaaggaacagaatgagagagggaga 253 ||||||||||||||||||| ||||| Sbjct: 16620 gaaggaacagaatgagagatggaga 16644
>ref|XM_474475.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3066 Score = 40.1 bits (20), Expect = 6.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 337 tgtagaagttgaacgggacagagggcatcctgctgcggaaccggggatggcg 388 ||||||||||||| ||||| || ||| | |||||||||| || |||||||| Sbjct: 3031 tgtagaagttgaaggggacggacggctgcttgctgcggaagcgcggatggcg 2980
>gb|AC147090.3| Pan troglodytes BAC clone RP43-58D11 from 7, complete sequence Length = 200913 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 acagtaaaacatataaaacc 147 |||||||||||||||||||| Sbjct: 126246 acagtaaaacatataaaacc 126265
>emb|X82654.1|HSCBL2GEN H.sapiens CBL2 gene Length = 1471 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 cacgaccagggacaggaatatgaa 475 |||||||| ||||||||||||||| Sbjct: 669 cacgaccaaggacaggaatatgaa 646
>gb|AC135780.2| Homo sapiens chromosome 16 clone CTD-2320F3, complete sequence Length = 125603 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ccaaactgcctctaattaat 187 |||||||||||||||||||| Sbjct: 94619 ccaaactgcctctaattaat 94638
>gb|AC005008.2| Homo sapiens BAC clone GS1-52G5 from 7, complete sequence Length = 91634 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 acagtaaaacatataaaacc 147 |||||||||||||||||||| Sbjct: 67963 acagtaaaacatataaaacc 67982
>gb|AC006320.4| Homo sapiens PAC clone RP5-839O24 from 7, complete sequence Length = 94793 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ccagaaaccccagagccaac 57 |||||||||||||||||||| Sbjct: 33330 ccagaaaccccagagccaac 33349
>gb|AC142294.1| Pan troglodytes BAC clone RP43-73M4 from 7, complete sequence Length = 173444 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 acagtaaaacatataaaacc 147 |||||||||||||||||||| Sbjct: 162183 acagtaaaacatataaaacc 162202
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 40.1 bits (20), Expect = 6.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 337 tgtagaagttgaacgggacagagggcatcctgctgcggaaccggggatggcg 388 ||||||||||||| ||||| || ||| | |||||||||| || |||||||| Sbjct: 61808 tgtagaagttgaaggggacggacggctgcttgctgcggaagcgcggatggcg 61757
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cacgatggccacgaccaggg 462 |||||||||||||||||||| Sbjct: 1035973 cacgatggccacgaccaggg 1035992
>gb|AC149050.2| Medicago truncatula chromosome 7 BAC clone mth2-6j14, complete sequence Length = 119126 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 agagccaacaatgttcatccaaaa 72 |||||||||||||||||| ||||| Sbjct: 101474 agagccaacaatgttcatgcaaaa 101497
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 337 tgtagaagttgaacgggacagagggcatcctgctgcggaaccggggatggcg 388 ||||||||||||| ||||| || ||| | |||||||||| || |||||||| Sbjct: 35437005 tgtagaagttgaaggggacggacggctgcttgctgcggaagcgcggatggcg 35436954
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gaacggcgtcacgtacagca 444 |||||||||||||||||||| Sbjct: 14533719 gaacggcgtcacgtacagca 14533738
>gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromosome 7, complete sequence Length = 176118 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ccagaaaccccagagccaac 57 |||||||||||||||||||| Sbjct: 63701 ccagaaaccccagagccaac 63720
>gb|AC116667.2| Homo sapiens chromosome 16 clone RP11-346C20, complete sequence Length = 156100 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccaaactgcctctaattaat 187 |||||||||||||||||||| Sbjct: 17048 ccaaactgcctctaattaat 17029
>gb|AC137491.1| Homo sapiens chromosome 16 clone LA16c-340B2, complete sequence Length = 41700 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ccaaactgcctctaattaat 187 |||||||||||||||||||| Sbjct: 40879 ccaaactgcctctaattaat 40860
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ttaccagaaggaacagaatg 242 |||||||||||||||||||| Sbjct: 3163250 ttaccagaaggaacagaatg 3163231
>dbj|AK106430.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C03, full insert sequence Length = 2680 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gaacggcgtcacgtacagca 444 |||||||||||||||||||| Sbjct: 1265 gaacggcgtcacgtacagca 1246
>dbj|AK101523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046O16, full insert sequence Length = 2683 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gaacggcgtcacgtacagca 444 |||||||||||||||||||| Sbjct: 1268 gaacggcgtcacgtacagca 1249
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence Length = 612 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 424 ggaacggcgtcacgtacagcacgatggc 451 ||||||| || ||||||||||||||||| Sbjct: 473 ggaacggtgtgacgtacagcacgatggc 500
>gb|AC133519.3| Mus musculus BAC clone RP23-178N8 from chromosome 5, complete sequence Length = 219269 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 caactcaccaagtatattca 207 |||||||||||||||||||| Sbjct: 106188 caactcaccaagtatattca 106169
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gaacggcgtcacgtacagca 444 |||||||||||||||||||| Sbjct: 14488003 gaacggcgtcacgtacagca 14488022
>emb|AL772414.3|CNS08C9S Oryza sativa chromosome 12, . BAC OSJNBa0040E18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158261 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gaacggcgtcacgtacagca 444 |||||||||||||||||||| Sbjct: 127574 gaacggcgtcacgtacagca 127555
>dbj|AP002956.1| Homo sapiens genomic DNA, chromosome 11q clone:R1105h09, complete sequence Length = 219574 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 cacgaccagggacaggaatatgaa 475 |||||||| ||||||||||||||| Sbjct: 74914 cacgaccaaggacaggaatatgaa 74891 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,282,464 Number of Sequences: 3902068 Number of extensions: 4282464 Number of successful extensions: 81855 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81598 Number of HSP's gapped (non-prelim): 257 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
