Clone Information

BLAST Search Result

Clone Name	rbags3c11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin ...	184	1e-46
2	VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin ...	170	2e-42
3	VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein...	149	6e-36
4	VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein...	141	9e-34
5	VDAC_PEA (P42054) Outer plastidial membrane protein porin (Volta...	138	8e-33
6	VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin ...	132	7e-31
7	VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Vol...	130	3e-30
8	VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin ...	129	5e-30
9	VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protei...	44	3e-04
10	VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin	44	3e-04
11	VDAC2_RABIT (P68003) Voltage-dependent anion-selective channel p...	39	0.011
12	VDAC2_PIG (Q9MZ15) Voltage-dependent anion-selective channel pro...	39	0.011
13	VDAC2_BOVIN (P68002) Voltage-dependent anion-selective channel p...	39	0.011
14	VDAC2_XENLA (P81004) Voltage-dependent anion-selective channel p...	38	0.014
15	VDAC2_RAT (P81155) Voltage-dependent anion-selective channel pro...	37	0.031
16	VDAC2_MOUSE (Q60930) Voltage-dependent anion-selective channel p...	37	0.031
17	VDAC2_MELGA (P82013) Voltage-dependent anion-selective channel p...	36	0.069
18	VDAC_DICDI (Q01501) Outer mitochondrial membrane protein porin (...	35	0.090
19	VDAC2_HUMAN (P45880) Voltage-dependent anion-selective channel p...	35	0.12
20	TRPC_STAHJ (Q4L677) Indole-3-glycerol phosphate synthase (EC 4.1...	33	0.45
21	VDAC3_RAT (Q9R1Z0) Voltage-dependent anion-selective channel pro...	33	0.59
22	UVRC_LACJO (Q74JN8) UvrABC system protein C (Protein uvrC) (Exci...	32	0.77
23	VDAC3_RABIT (Q9TT13) Voltage-dependent anion-selective channel p...	32	1.0
24	VDAC3_PIG (Q29380) Voltage-dependent anion-selective channel pro...	32	1.0
25	VDAC3_HUMAN (Q9Y277) Voltage-dependent anion-selective channel p...	32	1.0
26	VDAC3_BOVIN (Q9MZ13) Voltage-dependent anion-selective channel p...	32	1.0
27	VDAC3_PONPY (Q5R7V4) Voltage-dependent anion-selective channel p...	32	1.0
28	COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alp...	32	1.3
29	PUR9_SYNEL (Q8DIN5) Bifunctional purine biosynthesis protein pur...	31	1.7
30	UVRC_LACAC (Q5FKH6) UvrABC system protein C (Protein uvrC) (Exci...	31	1.7
31	VDAC3_MOUSE (Q60931) Voltage-dependent anion-selective channel p...	31	1.7
32	PER2_RAT (Q9Z301) Period circadian protein 2 (rPER2)	31	2.2
33	COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-a...	31	2.2
34	COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-a...	30	2.9
35	COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-a...	30	2.9
36	UVRC_LACPL (Q88VE9) UvrABC system protein C (Protein uvrC) (Exci...	30	3.8
37	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	30	3.8
38	UVRC_LACSS (Q38WS5) UvrABC system protein C (Protein uvrC) (Exci...	30	5.0
39	GLMU_DESVH (Q728D5) Bifunctional protein glmU [Includes: UDP-N-a...	30	5.0
40	MPP9_HUMAN (Q99550) M-phase phosphoprotein 9	30	5.0

>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 275

 Score =  184 bits (467), Expect = 1e-46
 Identities = 94/97 (96%), Positives = 94/97 (96%)
 Frame = -2

Query: 508 GDSLTASYYHFVEKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASA 329
           GDSLTASYYH VEKS TAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASA
Sbjct: 179 GDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASA 238

Query: 328 LIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 218
           LIQHEF PKSLCTISAEVDTKAIEKSSKVGIAIALKP
Sbjct: 239 LIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275

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>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 273

 Score =  170 bits (431), Expect = 2e-42
 Identities = 85/97 (87%), Positives = 92/97 (94%)
 Frame = -2

Query: 508 GDSLTASYYHFVEKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASA 329
           GDSLTASYYH V  S+TAVGAELTHSFSSNENSLTFGTQHTLDPLT+VKAR NNSGKASA
Sbjct: 177 GDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASA 236

Query: 328 LIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 218
           L+QHE+RPKS+ TISAEVDTKAI+KSSKVGIA+ALKP
Sbjct: 237 LLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 273

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>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 36)
          Length = 275

 Score =  149 bits (375), Expect = 6e-36
 Identities = 74/98 (75%), Positives = 89/98 (90%), Gaps = 1/98 (1%)
 Frame = -2

Query: 508 GDSLTASYYHFVEK-SSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           GD+++ASYYH V+  ++TAVGAELTHSFSSNEN+LT GTQH LDPLT VKAR+N+ GKAS
Sbjct: 178 GDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKAS 237

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 218
           ALIQHE+RPKSL TIS EVDT+AIEKS+K+G+A+ALKP
Sbjct: 238 ALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 275

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>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 34)
          Length = 275

 Score =  141 bits (356), Expect = 9e-34
 Identities = 70/98 (71%), Positives = 84/98 (85%), Gaps = 1/98 (1%)
 Frame = -2

Query: 508 GDSLTASYYHFVEK-SSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           GD+LTASYYH V   +STAVGAE+ HSFS+NEN +T GTQH LDPLT VKARINN GKAS
Sbjct: 178 GDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKAS 237

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 218
           AL+QHE+RPKSL T+S EVDTK+++K +K G+A+ALKP
Sbjct: 238 ALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 275

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>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 275

 Score =  138 bits (348), Expect = 8e-33
 Identities = 67/98 (68%), Positives = 83/98 (84%), Gaps = 1/98 (1%)
 Frame = -2

Query: 508 GDSLTASYYHFVEK-SSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           GD L+ASYYH +   S+TAVG +++H FS+ EN+ T GTQH LDPLT VK R+ NSGKAS
Sbjct: 178 GDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKAS 237

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 218
           ALIQHE+RPKSL TIS+EVDTKAIEKS+K+G+++ALKP
Sbjct: 238 ALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 275

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>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2|
           (Voltage-dependent anion-selective channel protein 2)
           (VDAC 2)
          Length = 273

 Score =  132 bits (331), Expect = 7e-31
 Identities = 64/97 (65%), Positives = 81/97 (83%)
 Frame = -2

Query: 508 GDSLTASYYHFVEKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASA 329
           G+ L ASYY  V  S T VGAE++H+F++ EN++T GTQH LDPLT VKAR+NN+G A+A
Sbjct: 178 GEKLNASYYQIVSPS-TVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANA 236

Query: 328 LIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 218
           LIQHE+RPKS  T+S EVD+KAI+KS+KVGIA+ALKP
Sbjct: 237 LIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 273

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>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 277

 Score =  130 bits (326), Expect = 3e-30
 Identities = 64/97 (65%), Positives = 79/97 (81%), Gaps = 1/97 (1%)
 Frame = -2

Query: 508 GDSLTASYYHFVEK-SSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           GD+L ASYYH V+  S TAVGAEL+HS S NE++L FG+QH+LDP T +K R NN G AS
Sbjct: 180 GDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMAS 239

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALK 221
           AL+QHE+RPKS  TIS +VDTKAIEKS+KVG+++ LK
Sbjct: 240 ALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276

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>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1|
           (Voltage-dependent anion-selective channel protein 1)
           (VDAC 1)
          Length = 275

 Score =  129 bits (324), Expect = 5e-30
 Identities = 64/98 (65%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
 Frame = -2

Query: 508 GDSLTASYYHFVEKS-STAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           GD L ASYYH V    +TAVGAE++H  SS ++++T GTQH+LDPLT VKAR+N++G AS
Sbjct: 178 GDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIAS 237

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 218
           ALIQHE++PKS  TIS EVDTK+I+KS+KVG+A+ALKP
Sbjct: 238 ALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 275

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>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin|
          Length = 282

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
 Frame = -2

Query: 493 ASYYHFVEKSSTAVGAELTHSFSSNENSLTF--GTQHTLDPLTLVKARINNSGKASALIQ 320
           ASYYH V  S    G  +T   +S  N++T    +++ LD  T VK +IN++G A+    
Sbjct: 189 ASYYHRVS-SDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYF 247

Query: 319 HEFRPKSLCTISAEVDTKAI-EKSSKVGIAIA 227
              RP     +  ++DT+ + + + K G+++A
Sbjct: 248 QTVRPGVTVGLGLQLDTQRLGQPAHKAGLSLA 279

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>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin|
          Length = 283

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = -2

Query: 496 TASYYHFVEKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQH 317
           +ASYYH V     A      +S + N   L   T++ +DP++ VK +IN+ G A+     
Sbjct: 190 SASYYHKVNSQVEAGSKATWNSKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAAIAYNV 249

Query: 316 EFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
             R      + A  DT+ +++++ KVG +   +
Sbjct: 250 LLREGVTLGVGASFDTQKLDQATHKVGTSFTFE 282

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>VDAC2_RABIT (P68003) Voltage-dependent anion-selective channel protein 2 (Outer|
           mitochondrial membrane protein porin 2)
          Length = 294

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -2

Query: 433 SFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI 260
           +++S  N   FG   ++ LDP   + A++NNS           RP    T+SA VD K+I
Sbjct: 220 AWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSI 279

Query: 259 EKSS-KVGIAIALK 221
                K+G+A+ L+
Sbjct: 280 NAGGHKLGLALELE 293

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>VDAC2_PIG (Q9MZ15) Voltage-dependent anion-selective channel protein 2|
          Length = 294

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -2

Query: 433 SFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI 260
           +++S  N   FG   ++ LDP   + A++NNS           RP    T+SA VD K+I
Sbjct: 220 AWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSI 279

Query: 259 EKSS-KVGIAIALK 221
                K+G+A+ L+
Sbjct: 280 NAGGHKLGLALELE 293

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>VDAC2_BOVIN (P68002) Voltage-dependent anion-selective channel protein 2 (Outer|
           mitochondrial membrane protein porin 2)
          Length = 294

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -2

Query: 433 SFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI 260
           +++S  N   FG   ++ LDP   + A++NNS           RP    T+SA VD K+I
Sbjct: 220 AWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSI 279

Query: 259 EKSS-KVGIAIALK 221
                K+G+A+ L+
Sbjct: 280 NAGGHKLGLALELE 293

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>VDAC2_XENLA (P81004) Voltage-dependent anion-selective channel protein 2 (Outer|
           mitochondrial membrane protein porin)
          Length = 282

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
 Frame = -2

Query: 508 GDSLTASYYHFV-EKSSTAVGAELTHSFSSNENSLTFG--TQHTLDPLTLVKARINNSGK 338
           G     S Y  V +K  TAV      +++S  NS  FG   ++ LD    + A++NNS  
Sbjct: 186 GSEFAGSIYQKVSDKMETAVNL----AWTSGNNSTRFGIAAKYQLDSHAAISAKVNNSSL 241

Query: 337 ASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
                    RP    T+SA VD K I     K+G+ + L+
Sbjct: 242 VGVGYTQTLRPGVKLTLSALVDGKNINAGGHKLGLGLELE 281

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>VDAC2_RAT (P81155) Voltage-dependent anion-selective channel protein 2|
           (VDAC-2) (Outer mitochondrial membrane protein porin 2)
           (B36-VDAC)
          Length = 295

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -2

Query: 433 SFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI 260
           +++S  N   FG   ++ LDP   + A++NNS           RP    T+SA VD K+ 
Sbjct: 221 AWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSF 280

Query: 259 EKSS-KVGIAIALK 221
                K+G+A+ L+
Sbjct: 281 NAGGHKLGLALELE 294

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>VDAC2_MOUSE (Q60930) Voltage-dependent anion-selective channel protein 2|
           (VDAC-2) (mVDAC2) (mVDAC6) (Outer mitochondrial membrane
           protein porin 2)
          Length = 295

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -2

Query: 433 SFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI 260
           +++S  N   FG   ++ LDP   + A++NNS           RP    T+SA VD K+ 
Sbjct: 221 AWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSF 280

Query: 259 EKSS-KVGIAIALK 221
                K+G+A+ L+
Sbjct: 281 NAGGHKLGLALELE 294

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>VDAC2_MELGA (P82013) Voltage-dependent anion-selective channel protein 2|
           (VDAC-2) (Outer mitochondrial membrane protein porin 2)
          Length = 282

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = -2

Query: 472 EKSSTAVGAELTHSFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKS 299
           +K S  +   +  ++++  NS  FG   ++ LD    + A++NNS           RP  
Sbjct: 195 QKVSDNLETAVNLAWTAGSNSTRFGIAAKYKLDSTASISAKVNNSSLVGVGYTQTLRPGV 254

Query: 298 LCTISAEVDTKAIEKSS-KVGIAIALK 221
             T+SA +D K+I     K+G+ + L+
Sbjct: 255 KLTLSALIDGKSINAGGHKLGLGLELE 281

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>VDAC_DICDI (Q01501) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 275

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 22/92 (23%), Positives = 41/92 (44%)
 Frame = -2

Query: 499 LTASYYHFVEKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQ 320
           L ++ Y    K S A    +    S    S   GTQ+ +D  +L+KA++NN+ K +    
Sbjct: 182 LLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVGTQYKIDSASLLKAKVNNNRKVNISYI 241

Query: 319 HEFRPKSLCTISAEVDTKAIEKSSKVGIAIAL 224
           +     +   +   V+TK  ++ +  G  + L
Sbjct: 242 YNTSNNTKFVLGWNVNTKNFKQGNTFGATVNL 273

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>VDAC2_HUMAN (P45880) Voltage-dependent anion-selective channel protein 2|
           (VDAC-2) (hVDAC2) (Outer mitochondrial membrane protein
           porin 2)
          Length = 347

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 433 SFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI 260
           +++S  N   FG   ++ LDP   + A++NNS           RP    T+SA VD K+I
Sbjct: 235 AWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSI 294

Query: 259 EKSS-KVG 239
                KVG
Sbjct: 295 NAGGHKVG 302

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>TRPC_STAHJ (Q4L677) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 260

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 34  DRHYTDQRQNSSGMKHGSSSNLTDC----DNAPKACEVFVKSP 150
           D +Y D+ QN  G+KH + S LTD     DN     E+  KSP
Sbjct: 17  DGYYHDKLQNLKGVKHKNKSRLTDALIKNDNLTLIAEIKSKSP 59

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>VDAC3_RAT (Q9R1Z0) Voltage-dependent anion-selective channel protein 3|
           (VDAC-3) (rVDAC3) (Outer mitochondrial membrane protein
           porin 3)
          Length = 283

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -2

Query: 487 YYHFVEKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFR 308
           Y    EK  T++   L  +  SN        ++ LD  T + A++NN+           R
Sbjct: 195 YQRVNEKIETSIN--LAWTAGSNNTRFGIAAKYRLDCRTSLSAKVNNASLIGLGYTQSLR 252

Query: 307 PKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
           P    T+SA VD K       KVG+   L+
Sbjct: 253 PGVKLTLSALVDGKNFNAGGHKVGLGFELE 282

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>UVRC_LACJO (Q74JN8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 600

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 27  LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SI--CQIATIPSETE 170
           +NG  ++  K+K L+N  R +FKS ++ +RA+ V  I    I T+ S+ E
Sbjct: 25  VNGNVIYVGKSKNLKNRVRSYFKSKQVGRRAELVREIRDFDIITVSSDKE 74

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>VDAC3_RABIT (Q9TT13) Voltage-dependent anion-selective channel protein 3|
           (VDAC-3) (Outer mitochondrial membrane protein porin 3)
          Length = 283

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = -2

Query: 508 GDSLTASYYHFV-EKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           G     S Y  V EK  T++   L  +  SN        ++ LD  T + A++NN+    
Sbjct: 187 GTEFGGSIYQKVNEKIETSIN--LAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNASLIG 244

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
                  RP    T+SA +D K       KVG+   L+
Sbjct: 245 LGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELE 282

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>VDAC3_PIG (Q29380) Voltage-dependent anion-selective channel protein 3|
           (VDAC-3) (Outer mitochondrial membrane protein porin 3)
          Length = 283

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = -2

Query: 508 GDSLTASYYHFV-EKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           G     S Y  V EK  T++   L  +  SN        ++ LD  T + A++NN+    
Sbjct: 187 GTEFGGSIYQKVNEKIETSIN--LAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNASLIG 244

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
                  RP    T+SA +D K       KVG+   L+
Sbjct: 245 LGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELE 282

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>VDAC3_HUMAN (Q9Y277) Voltage-dependent anion-selective channel protein 3|
           (VDAC-3) (hVDAC3) (Outer mitochondrial membrane protein
           porin 3)
          Length = 283

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = -2

Query: 508 GDSLTASYYHFV-EKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           G     S Y  V EK  T++   L  +  SN        ++ LD  T + A++NN+    
Sbjct: 187 GTEFGGSIYQKVNEKIETSIN--LAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNNASLIG 244

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
                  RP    T+SA +D K       KVG+   L+
Sbjct: 245 LGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELE 282

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>VDAC3_BOVIN (Q9MZ13) Voltage-dependent anion-selective channel protein 3|
           (VDAC-3) (hVDAC3) (Outer mitochondrial membrane protein
           porin 3)
          Length = 283

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = -2

Query: 508 GDSLTASYYHFV-EKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           G     S Y  V EK  T++   L  +  SN        ++ LD  T + A++NN+    
Sbjct: 187 GTEFGGSIYQKVNEKIETSIN--LAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNASLIG 244

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
                  RP    T+SA +D K       KVG+   L+
Sbjct: 245 LGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELE 282

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>VDAC3_PONPY (Q5R7V4) Voltage-dependent anion-selective channel protein 3|
           (VDAC-3)
          Length = 284

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = -2

Query: 508 GDSLTASYYHFV-EKSSTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKAS 332
           G     S Y  V EK  T++   L  +  SN        ++ LD  T + A++NN+    
Sbjct: 188 GTEFGGSIYQKVNEKIETSIN--LAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNNASLIG 245

Query: 331 ALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 221
                  RP    T+SA +D K       KVG+   L+
Sbjct: 246 LGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELE 283

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>COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2345

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 143 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 283
           N  D I N    L ++++EG +SP+ + S+  +DL   AL DGL  H+R
Sbjct: 28  NSEDEISNL-VKLDLEEKEGSLSPASVSSDTLSDLGISALQDGLAFHMR 75

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>PUR9_SYNEL (Q8DIN5) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 518

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -1

Query: 446 GADPQLLEQREQPHLRHSAYPRPAHPREGSHQQLWQGK 333
           G   Q+L   E PH R S Y   AHPR  +   L QGK
Sbjct: 212 GRQKQVLRYGENPHQRASWYVCGAHPRGWAAAHLLQGK 249

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>UVRC_LACAC (Q5FKH6) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 600

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +3

Query: 27  LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SI--CQIATIPSETE 170
           +NG  ++  K+K L+N  R +FKS ++ +RA+ V  I    I T+ ++ E
Sbjct: 25  INGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVREIRDYDIITVSTDKE 74

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>VDAC3_MOUSE (Q60931) Voltage-dependent anion-selective channel protein 3|
           (VDAC-3) (mVDAC3) (Outer mitochondrial membrane protein
           porin 3)
          Length = 283

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = -2

Query: 472 EKSSTAVGAELTHSFSSNENSLTFG--TQHTLDPLTLVKARINNSGKASALIQHEFRPKS 299
           +K +  +   +  ++++  N+  FG   ++ LD  T + A++NN+           RP  
Sbjct: 196 QKVNERIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNASLIGLGYTQTLRPGV 255

Query: 298 LCTISAEVDTKAIEKSS-KVGIAIALK 221
             T+SA +D K       KVG+   L+
Sbjct: 256 KLTLSALIDGKNFNAGGHKVGLGFELE 282

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>PER2_RAT (Q9Z301) Period circadian protein 2 (rPER2)|
          Length = 1257

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 49  DQRQNSSGMKH---GSSSNLTDCDNAPKACEVFVKSPRFHPKPRNT 177
           D    SSG ++   G  S  +DCD++ K   + V+S   HP P +T
Sbjct: 33  DMSSGSSGNENCSTGRDSQGSDCDDSGKELRMLVESSNTHPSPDDT 78

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>COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 143 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 283
           N  D I N      ++++EG +SP+ + S+  +DL   AL DGL +H+R
Sbjct: 28  NSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISALQDGLALHIR 76

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>COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 143 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 283
           N  D I N      ++++EG +SP+ + S+  +DL   +L DGL +H+R
Sbjct: 28  NSEDEISNLVKLDLLEEKEGSLSPASVSSDTLSDLGISSLQDGLALHMR 76

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>COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)|
           [Includes: Biotin carboxylase (EC 6.3.4.14)]
          Length = 2346

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 143 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 283
           N  D I N      ++++EG +SP+ + S+  +DL   +L DGL +H+R
Sbjct: 28  NSEDEISNLVKLDLLEEKEGSLSPASVSSDTLSDLGISSLQDGLALHMR 76

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>UVRC_LACPL (Q88VE9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 604

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 27  LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SICQIATIPSETEE 173
           LN Q ++  K K L+N  R +FKS+   + A+ V  I     I + T++
Sbjct: 25  LNSQIIYVGKAKNLKNRVRSYFKSSHTGKTARLVSEIADFEFIVTSTDK 73

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 413 QPHLRHSAYPRPAHPREGSHQQLWQGKRADPARVQA 306
           QP+ RHS  PRP  P+  S   + +G  + P R Q+
Sbjct: 691 QPNKRHSPSPRPRAPQTSSPPPVRRGASSSPQRRQS 726

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>UVRC_LACSS (Q38WS5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 592

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 27  LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SICQIATIPSETEE 173
           +N Q ++  K K L+N  R +FKS+   + A+ V  I    TI + T +
Sbjct: 25  INAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNK 73

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>GLMU_DESVH (Q728D5) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 455

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +2

Query: 299 RLRPELVLDQRACLARVVD---ASLHEGERV*GMLSAEGEAVLVAREAV--GQLRPNSCA 463
           RLRP  VLD+ A +   V+   A LH+G +  G L+  G+A + A   +  G +  N   
Sbjct: 334 RLRPGAVLDEEARVGNFVEMKKARLHKGAKA-GHLTYLGDADVGAGANIGAGTITCNYDG 392

Query: 464 GLLHKVVIGCG 496
              H+ VIG G
Sbjct: 393 KNKHRTVIGAG 403

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>MPP9_HUMAN (Q99550) M-phase phosphoprotein 9|
          Length = 692

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 19/61 (31%), Positives = 24/61 (39%)
 Frame = +1

Query: 34  DRHYTDQRQNSSGMKHGSSSNLTDCDNAPKACEVFVKSPRFHPKPRNTPESSEKRGLDFA 213
           D +Y  QR+N    K     NLT   N     EV    P  H KP+      +  GL  A
Sbjct: 56  DIYYKKQREN----KQLPERNLTSASNPNHPPEVLTLDPTLHMKPKQQISGIQPHGLPNA 111

Query: 214 I 216
           +
Sbjct: 112 L 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,908,617
Number of Sequences: 219361
Number of extensions: 1260835
Number of successful extensions: 4325
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4319
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result