ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3c05 |
|---|---|
| Clone Library Name | barley_pub |
>RFA2_HUMAN (P15927) Replication protein A 32 kDa subunit (RP-A) (RF-A)| (Replication factor-A protein 2) (p32) (p34) Length = 270 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Frame = -1 Query: 568 PLNNQAPTLSASGNAGGNELSDMVMNVFHDPMLVNL------EHGVSIQQVASRLK-ISD 410 P++N P +S +GN GGN ++NL G++ Q + ++LK +S Sbjct: 182 PISN--PGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSV 239 Query: 409 ALARSTVTHLLDVGNLYPTIDDNHYKST 326 + + V L + G++Y T+DD+H+KST Sbjct: 240 SSIKQAVDFLSNEGHIYSTVDDDHFKST 267
>RFA2_PONPY (Q5RC43) Replication protein A 32 kDa subunit (RP-A) (RF-A)| (Replication factor-A protein 2) (p32) Length = 270 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Frame = -1 Query: 568 PLNNQAPTLSASGNAGGNELSDMVMNVFHDPMLVNL------EHGVSIQQVASRLK-ISD 410 P++N P +S +GN GGN ++NL G++ Q + ++LK +S Sbjct: 182 PISN--PGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSV 239 Query: 409 ALARSTVTHLLDVGNLYPTIDDNHYKST 326 + + + L + G++Y T+DD+H+KST Sbjct: 240 SSVKQAMDFLSNEGHIYSTVDDDHFKST 267
>RFA2_RAT (Q63528) Replication protein A 32 kDa subunit (RP-A) (RF-A)| (Replication factor-A protein 2) (p32) Length = 270 Score = 35.8 bits (81), Expect = 0.10 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Frame = -1 Query: 571 PPLNNQAPTLSASGNAGGNELSDMVMNVFHDPMLVNL------EHGVSIQQVASRLK-IS 413 P ++N P + GN GN ++NL G++ Q + S+L+ + Sbjct: 181 PSMSN--PGMGEPGNFSGNNFMPANGLTVVQNQVLNLIKACPRPEGLNFQDLRSQLQHMP 238 Query: 412 DALARSTVTHLLDVGNLYPTIDDNHYKST 326 A + V L + G++Y T+DD+H+KST Sbjct: 239 VASIKQAVDFLCNEGHIYSTVDDDHFKST 267
>RFA2_MOUSE (Q62193) Replication protein A 32 kDa subunit (RP-A) (RF-A)| (Replication factor-A protein 2) (p32) Length = 270 Score = 34.7 bits (78), Expect = 0.23 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Frame = -1 Query: 571 PPLNNQAPTLSASGNAGGNELSDMVMNVFHDPMLVNL------EHGVSIQQVASRLKISD 410 P ++N P +S S N GN ++NL G++ Q + S+L+ Sbjct: 181 PSMSN--PGMSESFNFSGNNFMPANRLTVVQNQVLNLIKACPRPEGLNFQDLRSQLQHMP 238 Query: 409 ALA-RSTVTHLLDVGNLYPTIDDNHYKST 326 + + V L + G++Y T+DD+H+KST Sbjct: 239 VPSIKQAVDFLCNEGHIYSTVDDDHFKST 267
>RFA4_HUMAN (Q13156) Replication protein A 30 kDa subunit (RP-A) (RF-A)| (Replication factor-A protein 4) (p30) Length = 261 Score = 33.1 bits (74), Expect = 0.66 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = -1 Query: 517 NELSDMVMNVFHDPMLVNLEHGVSIQQVASRL-KISDALARSTVTHLLDVGNLYPTIDDN 341 N + D V+ + H+ + G SI ++ ++L +S + + +L G++YPT+D Sbjct: 199 NFIQDEVLRLIHE---CPHQEGKSIHELRAQLCDLSVKAIKEAIDYLTVEGHIYPTVDRE 255 Query: 340 HYKS 329 H+KS Sbjct: 256 HFKS 259
>RFA2_YEAST (P26754) Replication factor-A protein 2 (RF-A) (DNA-binding protein| BUF1) (Replication protein A 36 kDa subunit) Length = 273 Score = 33.1 bits (74), Expect = 0.66 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -1 Query: 451 VSIQQVASRLKISDALARSTVTHLLDVGNLYPTIDDNHY 335 V I ++ L + + R+ T L D G +YPT DDN++ Sbjct: 232 VPIPLISQSLNLDETTVRNCCTTLTDQGFIYPTFDDNNF 270
>RFA2_SCHPO (Q92373) Replication factor-A protein 2 (Single-stranded| DNA-binding protein P30 subunit) Length = 279 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -1 Query: 499 VMNVFHDPMLVNLEHGVSIQQVASRLKISDALARSTVTHLLDV-GNLYPTIDDNHYKSTL 323 VM H N GV ++Q+A + + + VT L G +Y TID+NH+KS L Sbjct: 221 VMQAIHSAPETN--EGVHVRQLAQ--SVGPGIDLTAVTDFLQQEGIIYTTIDENHFKSVL 276
>SAS4_CAEEL (P34402) Spindle assembly abnormal protein 4| Length = 808 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -1 Query: 607 QVTASASTWNQGPPLNNQAPTLSASGNAGGNELSDMVMNVFHDPMLVNLEHGVS 446 +V + T N PP+ NQ+ +S + N S + F P N E GVS Sbjct: 505 KVAMNRKTSNPVPPVLNQSVPISITSNGPSRHPSSSSLTTFRKPSTSNRERGVS 558
>Y175_BUCAP (Q8K9W1) Hypothetical protein BUsg175 (yba2)| Length = 234 Score = 30.0 bits (66), Expect = 5.6 Identities = 25/88 (28%), Positives = 40/88 (45%) Frame = -1 Query: 601 TASASTWNQGPPLNNQAPTLSASGNAGGNELSDMVMNVFHDPMLVNLEHGVSIQQVASRL 422 ++SA+T L N T A+G AGG L +M+MN+F+ H +++ + Sbjct: 124 SSSAATTRNSGFLKNALQT--ATGVAGGMILGNMLMNLFN--------HTTPEEEIFDNI 173 Query: 421 KISDALARSTVTHLLDVGNLYPTIDDNH 338 S A D+ N Y +I +NH Sbjct: 174 NQSSA---------SDIDNEYDSIQNNH 192
>SEC39_YEAST (Q12745) Protein transport protein SEC39 (Dependent on SLY1-20| protein 3) Length = 709 Score = 29.6 bits (65), Expect = 7.3 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 237 FAGPLDSRNESNLTARLSCISKYLRLMC 154 FA D+RN L+ RL SKYL ++C Sbjct: 13 FASRADTRNIKKLSTRLGSQSKYLEILC 40 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,898,886 Number of Sequences: 219361 Number of extensions: 1759918 Number of successful extensions: 3662 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3661 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
