ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags3b02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ223006.1| Hordeum vulgare chloroplast lipocalin (CHL) mRNA, complete cds; nuclear gene for chloroplast product Length = 1013 Score = 1049 bits (529), Expect = 0.0 Identities = 537/540 (99%) Strand = Plus / Minus Query: 79 ttacttgaaatacacttcggcgagcttcttcagggtctgggtcacgctcgtgaacgggtc 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1013 ttacttgaaatacacttcggcgagcttcttcagggtctgggtcacgctcgtgaacgggtc 954 Query: 139 gaacgcgaccgacgacttgagcttcaggtccgggaactggtttgtcagggcctcgtccat 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 953 gaacgcgaccgacgacttgagcttcaggtccgggaactggtttgtcagggcctcgtccat 894 Query: 199 cccgggcatagacatcatctgcgctagctggtccgaggacacctcgcagtcctgnggcgt 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 893 cccgggcatagacatcatctgcgctagctggtccgaggacacctcgcagtcctgcggcgt 834 Query: 259 gtccttgatcttgctcgggtcgtagccgaagccggcagcatatgacttgtacttctcgat 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 833 gtccttgatcttgctcgggtcgtagccgaagccggcagcatatgacttgtacttctcgat 774 Query: 319 gaactccggtccgggatttggtgttcttgagtatatctgaataaagcttgtgtccttcgc 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 773 gaactccggtccgggatttggtgttcttgagtatatctgaataaagcttgtgtccttcgc 714 Query: 379 tccagacacaacggcgtaattgtcatagtcagttgctaggacatcatagggtagcttggg 438 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 713 tccagacacgacggcgtaattgtcatagtcagttgctaggacatcatagggtagcttggg 654 Query: 439 tatgaacgggagtgtcgggaatcgcagaaagcacttgctgctgatcatctcctccttctc 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 653 tatgaacgggagtgtcgggaatcgcagaaagcacttgctgctgatcatctcctccttctc 594 Query: 499 gagatcagtctcggcactagccatgtcctcttgagacaggcattgcaccttcccccggat 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 593 gagatcagtctcggcactagccatgtcctcttgagacaggcattgcaccttcccccggat 534 Query: 559 accggtgatgtatccatcgggtgagccatggacacagaatgtcttcaccttgatcgcgcc 618 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 533 accggtgatgtatccatcgggtgagccatggacacagaatgtctccaccttgatcgcgcc 474
>gb|DQ223009.1| Triticum aestivum chloroplast lipocalin (CHL) mRNA, complete cds; nuclear gene for chloroplast product Length = 1020 Score = 835 bits (421), Expect = 0.0 Identities = 510/540 (94%) Strand = Plus / Minus Query: 79 ttacttgaaatacacttcggcgagcttcttcagggtctgggtcacgctcgtgaacgggtc 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 ttacttgaaatacacttcggcgagcttcttcagggtctgggtcacgctcgtgaacgggtc 961 Query: 139 gaacgcgaccgacgacttgagcttcaggtccgggaactggtttgtcagggcctcgtccat 198 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 960 gaacgcgaccgacgacttgagcttcaggtccgggaactggttcgtcagggcctggtccat 901 Query: 199 cccgggcatagacatcatctgcgctagctggtccgaggacacctcgcagtcctgnggcgt 258 ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||| Sbjct: 900 cccgggcatggacatcatctccgcaagctggtccgaggacacctcgcagtcctgcggcgt 841 Query: 259 gtccttgatcttgctcgggtcgtagccgaagccggcagcatatgacttgtacttctcgat 318 |||||||||||||||| | |||||||||||||| || || || ||||||||||||||||| Sbjct: 840 gtccttgatcttgctcagatcgtagccgaagccagcggcgtacgacttgtacttctcgat 781 Query: 319 gaactccggtccgggatttggtgttcttgagtatatctgaataaagcttgtgtccttcgc 378 |||||||||||| || |||||||||||||||||||||||||||||||| |||||||| || Sbjct: 780 gaactccggtccagggtttggtgttcttgagtatatctgaataaagctggtgtcctttgc 721 Query: 379 tccagacacaacggcgtaattgtcatagtcagttgctaggacatcatagggtagcttggg 438 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 720 tccagacacgacggcgtaattgtcatagtcagtcgccaggacatcatagggtagcttggg 661 Query: 439 tatgaacgggagtgtcgggaatcgcagaaagcacttgctgctgatcatctcctccttctc 498 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct: 660 tatgaaggggagtgtcgggaagcgcagaaagcacttgctgctgatcatctcctccctctc 601 Query: 499 gagatcagtctcggcactagccatgtcctcttgagacaggcattgcaccttcccccggat 558 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 600 aagatcagtctcggcaccagccatgtcttcttgagacaggcattgcaccttcccccggat 541 Query: 559 accggtgatgtatccatcgggtgagccatggacacagaatgtcttcaccttgatcgcgcc 618 ||||||||||||||| || ||||| ||||||||||||||||||| ||||||||| ||||| Sbjct: 540 accggtgatgtatccgtcaggtgaaccatggacacagaatgtctccaccttgattgcgcc 481
>gb|DQ223005.1| Sorghum bicolor chloroplast lipocalin (CHL) mRNA, complete cds; nuclear gene for chloroplast product Length = 1023 Score = 335 bits (169), Expect = 1e-88 Identities = 368/434 (84%), Gaps = 3/434 (0%) Strand = Plus / Minus Query: 170 gggaactggtttgtcagggcctcgtccatcccgggcatagacatcatctgcgctagctgg 229 |||||||| || |||||||| |||| |||||||||||| ||||||||| || | |||| Sbjct: 932 gggaactgattcgtcagggcttcgttcatcccgggcatcgacatcatcaaggcaatctgg 873 Query: 230 tccgaggacac---ctcgcagtcctgnggcgtgtccttgatcttgctcgggtcgtagccg 286 || ||||||| ||||||||| || || ||||||||||||||||| ||||| |||||| Sbjct: 872 tctgaggacatgtactcgcagtcttgaggggtgtccttgatcttgcttgggtcatagccg 813 Query: 287 aagccggcagcatatgacttgtacttctcgatgaactccggtccgggatttggtgttctt 346 ||| |||| |||| |||||||||||||| ||||| || || ||||| || ||||||||| Sbjct: 812 aagttggcaacataggacttgtacttctcaatgaattctggcccggggttgggtgttctt 753 Query: 347 gagtatatctgaataaagcttgtgtccttcgctccagacacaacggcgtaattgtcatag 406 ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||| Sbjct: 752 gagtatatctgaataaagcttgtatccttagctccagacacaactgcataattgtcatag 693 Query: 407 tcagttgctaggacatcatagggtagcttgggtatgaacgggagtgtcgggaatcgcaga 466 |||||||| |||||||||||||| |||||||||||| || || || ||||| || ||| Sbjct: 692 tcagttgcaaggacatcatagggctccttgggtatgaatggcagcgtggggaaccggaga 633 Query: 467 aagcacttgctgctgatcatctcctccttctcgagatcagtctcggcactagccatgtcc 526 ||||| || | ||||||||||| | |||| ||||| ||||| ||||| | ||||||| Sbjct: 632 aagcatttctcacggatcatctcctgcctctcaagatctgtctcagcacttgacatgtcc 573 Query: 527 tcttgagacaggcattgcaccttcccccggataccggtgatgtatccatcgggtgagcca 586 |||| ||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||| Sbjct: 572 tcttcggacaggcattgcaccctcccccgaataccagtgatgtatccatcaggtccacca 513 Query: 587 tggacacagaatgt 600 |||||||||||||| Sbjct: 512 tggacacagaatgt 499
>ref|XM_473969.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1431 Score = 319 bits (161), Expect = 6e-84 Identities = 375/446 (84%), Gaps = 3/446 (0%) Strand = Plus / Minus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 1352 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 1293 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 1292 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 1233 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 1232 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 1173 Query: 335 tttggtgttcttgagtatatctgaataaagcttgtgtccttcgctccagacacaacggcg 394 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct: 1172 ttaggtgttcttgagtatatctggataaagcttgtgtctttagcaccagacacaacggcg 1113 Query: 395 taattgtcatagtcagttgctaggacatcatagggtagcttgggtatgaacgggagtgtc 454 ||||||||||| || ||||| || |||||||| ||| |||||||||||| || ||||| Sbjct: 1112 taattgtcataatcggttgcaagcacatcataaggttccttgggtatgaatggtagtgtg 1053 Query: 455 gggaatcgcagaaagcacttgctgctgatcatctcctccttctcgagatcagtctcggca 514 ||||| || |||||||| || | |||||||||||| | | || ||||| ||||| ||| Sbjct: 1052 gggaaacggagaaagcatttccccttgatcatctcctgcctttcaagatctgtctcagca 993 Query: 515 ctagccatgtcctcttgagacaggcattgcaccttcccccggataccggtgatgtatcca 574 || ||||||||||||| ||||||||||||||| | ||||| |||||||||||||| ||| Sbjct: 992 ctcgccatgtcctcttcggacaggcattgcacccttccccgaataccggtgatgtaacca 933 Query: 575 tcgggtgagccatggacacagaatgt 600 || ||| ||||| ||||||||||| Sbjct: 932 tcaggtccaccatgaacacagaatgt 907
>dbj|AK104663.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G03, full insert sequence Length = 1205 Score = 319 bits (161), Expect = 6e-84 Identities = 375/446 (84%), Gaps = 3/446 (0%) Strand = Plus / Minus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 1054 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 995 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 994 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 935 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 934 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 875 Query: 335 tttggtgttcttgagtatatctgaataaagcttgtgtccttcgctccagacacaacggcg 394 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct: 874 ttaggtgttcttgagtatatctggataaagcttgtgtctttagcaccagacacaacggcg 815 Query: 395 taattgtcatagtcagttgctaggacatcatagggtagcttgggtatgaacgggagtgtc 454 ||||||||||| || ||||| || |||||||| ||| |||||||||||| || ||||| Sbjct: 814 taattgtcataatcggttgcaagcacatcataaggttccttgggtatgaatggtagtgtg 755 Query: 455 gggaatcgcagaaagcacttgctgctgatcatctcctccttctcgagatcagtctcggca 514 ||||| || |||||||| || | |||||||||||| | | || ||||| ||||| ||| Sbjct: 754 gggaaacggagaaagcatttccccttgatcatctcctgcctttcaagatctgtctcagca 695 Query: 515 ctagccatgtcctcttgagacaggcattgcaccttcccccggataccggtgatgtatcca 574 || ||||||||||||| ||||||||||||||| | ||||| |||||||||||||| ||| Sbjct: 694 ctcgccatgtcctcttcggacaggcattgcacccttccccgaataccggtgatgtaacca 635 Query: 575 tcgggtgagccatggacacagaatgt 600 || ||| ||||| ||||||||||| Sbjct: 634 tcaggtccaccatgaacacagaatgt 609
>dbj|AK104062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-A06, full insert sequence Length = 1173 Score = 319 bits (161), Expect = 6e-84 Identities = 375/446 (84%), Gaps = 3/446 (0%) Strand = Plus / Minus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 1008 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 949 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 948 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 889 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 888 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 829 Query: 335 tttggtgttcttgagtatatctgaataaagcttgtgtccttcgctccagacacaacggcg 394 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct: 828 ttaggtgttcttgagtatatctggataaagcttgtgtctttagcaccagacacaacggcg 769 Query: 395 taattgtcatagtcagttgctaggacatcatagggtagcttgggtatgaacgggagtgtc 454 ||||||||||| || ||||| || |||||||| ||| |||||||||||| || ||||| Sbjct: 768 taattgtcataatcggttgcaagcacatcataaggttccttgggtatgaatggtagtgtg 709 Query: 455 gggaatcgcagaaagcacttgctgctgatcatctcctccttctcgagatcagtctcggca 514 ||||| || |||||||| || | |||||||||||| | | || ||||| ||||| ||| Sbjct: 708 gggaaacggagaaagcatttccccttgatcatctcctgcctttcaagatctgtctcagca 649 Query: 515 ctagccatgtcctcttgagacaggcattgcaccttcccccggataccggtgatgtatcca 574 || ||||||||||||| ||||||||||||||| | ||||| |||||||||||||| ||| Sbjct: 648 ctcgccatgtcctcttcggacaggcattgcacccttccccgaataccggtgatgtaacca 589 Query: 575 tcgggtgagccatggacacagaatgt 600 || ||| ||||| ||||||||||| Sbjct: 588 tcaggtccaccatgaacacagaatgt 563
>dbj|AK100069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164B14, full insert sequence Length = 1190 Score = 319 bits (161), Expect = 6e-84 Identities = 375/446 (84%), Gaps = 3/446 (0%) Strand = Plus / Minus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 1045 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 986 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 985 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 926 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 925 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 866 Query: 335 tttggtgttcttgagtatatctgaataaagcttgtgtccttcgctccagacacaacggcg 394 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct: 865 ttaggtgttcttgagtatatctggataaagcttgtgtctttagcaccagacacaacggcg 806 Query: 395 taattgtcatagtcagttgctaggacatcatagggtagcttgggtatgaacgggagtgtc 454 ||||||||||| || ||||| || |||||||| ||| |||||||||||| || ||||| Sbjct: 805 taattgtcataatcggttgcaagcacatcataaggttccttgggtatgaatggtagtgtg 746 Query: 455 gggaatcgcagaaagcacttgctgctgatcatctcctccttctcgagatcagtctcggca 514 ||||| || |||||||| || | |||||||||||| | | || ||||| ||||| ||| Sbjct: 745 gggaaacggagaaagcatttccccttgatcatctcctgcctttcaagatctgtctcagca 686 Query: 515 ctagccatgtcctcttgagacaggcattgcaccttcccccggataccggtgatgtatcca 574 || ||||||||||||| ||||||||||||||| | ||||| |||||||||||||| ||| Sbjct: 685 ctcgccatgtcctcttcggacaggcattgcacccttccccgaataccggtgatgtaacca 626 Query: 575 tcgggtgagccatggacacagaatgt 600 || ||| ||||| ||||||||||| Sbjct: 625 tcaggtccaccatgaacacagaatgt 600
>dbj|AK059851.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G09, full insert sequence Length = 1212 Score = 319 bits (161), Expect = 6e-84 Identities = 375/446 (84%), Gaps = 3/446 (0%) Strand = Plus / Minus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 1065 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 1006 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 1005 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 946 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 945 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 886 Query: 335 tttggtgttcttgagtatatctgaataaagcttgtgtccttcgctccagacacaacggcg 394 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct: 885 ttaggtgttcttgagtatatctggataaagcttgtgtctttagcaccagacacaacggcg 826 Query: 395 taattgtcatagtcagttgctaggacatcatagggtagcttgggtatgaacgggagtgtc 454 ||||||||||| || ||||| || |||||||| ||| |||||||||||| || ||||| Sbjct: 825 taattgtcataatcggttgcaagcacatcataaggttccttgggtatgaatggtagtgtg 766 Query: 455 gggaatcgcagaaagcacttgctgctgatcatctcctccttctcgagatcagtctcggca 514 ||||| || |||||||| || | |||||||||||| | | || ||||| ||||| ||| Sbjct: 765 gggaaacggagaaagcatttccccttgatcatctcctgcctttcaagatctgtctcagca 706 Query: 515 ctagccatgtcctcttgagacaggcattgcaccttcccccggataccggtgatgtatcca 574 || ||||||||||||| ||||||||||||||| | ||||| |||||||||||||| ||| Sbjct: 705 ctcgccatgtcctcttcggacaggcattgcacccttccccgaataccggtgatgtaacca 646 Query: 575 tcgggtgagccatggacacagaatgt 600 || ||| ||||| ||||||||||| Sbjct: 645 tcaggtccaccatgaacacagaatgt 620
>dbj|AK058335.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D02, full insert sequence Length = 378 Score = 192 bits (97), Expect = 9e-46 Identities = 206/242 (85%), Gaps = 3/242 (1%) Strand = Plus / Minus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 242 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 183 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 182 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 123 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 122 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 63 Query: 335 tttggtgttcttgagtatatctgaataaagcttgtgtccttcgctccagacacaacggcg 394 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct: 62 ttaggtgttcttgagtatatctggataaagcttgtgtctttagcaccagacacaacggcg 3 Query: 395 ta 396 || Sbjct: 2 ta 1
>gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, genomic sequence Length = 64224 Score = 178 bits (90), Expect = 1e-41 Identities = 204/242 (84%) Strand = Plus / Plus Query: 359 ataaagcttgtgtccttcgctccagacacaacggcgtaattgtcatagtcagttgctagg 418 |||||||||||||| || || |||||||||||||||||||||||||| || ||||| || Sbjct: 44161 ataaagcttgtgtctttagcaccagacacaacggcgtaattgtcataatcggttgcaagc 44220 Query: 419 acatcatagggtagcttgggtatgaacgggagtgtcgggaatcgcagaaagcacttgctg 478 |||||||| ||| |||||||||||| || ||||| ||||| || |||||||| || | Sbjct: 44221 acatcataaggttccttgggtatgaatggtagtgtggggaaacggagaaagcatttcccc 44280 Query: 479 ctgatcatctcctccttctcgagatcagtctcggcactagccatgtcctcttgagacagg 538 |||||||||||| | | || ||||| ||||| ||||| ||||||||||||| |||||| Sbjct: 44281 ttgatcatctcctgcctttcaagatctgtctcagcactcgccatgtcctcttcggacagg 44340 Query: 539 cattgcaccttcccccggataccggtgatgtatccatcgggtgagccatggacacagaat 598 ||||||||| | ||||| |||||||||||||| ||||| ||| ||||| ||||||||| Sbjct: 44341 cattgcacccttccccgaataccggtgatgtaaccatcaggtccaccatgaacacagaat 44400 Query: 599 gt 600 || Sbjct: 44401 gt 44402 Score = 149 bits (75), Expect = 1e-32 Identities = 172/204 (84%), Gaps = 3/204 (1%) Strand = Plus / Plus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 43697 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 43756 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 43757 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 43816 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 43817 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 43876 Query: 335 tttggtgttcttgagtatatctga 358 || ||||||||||||||||||||| Sbjct: 43877 ttaggtgttcttgagtatatctga 43900
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 178 bits (90), Expect = 1e-41 Identities = 204/242 (84%) Strand = Plus / Plus Query: 359 ataaagcttgtgtccttcgctccagacacaacggcgtaattgtcatagtcagttgctagg 418 |||||||||||||| || || |||||||||||||||||||||||||| || ||||| || Sbjct: 55909 ataaagcttgtgtctttagcaccagacacaacggcgtaattgtcataatcggttgcaagc 55968 Query: 419 acatcatagggtagcttgggtatgaacgggagtgtcgggaatcgcagaaagcacttgctg 478 |||||||| ||| |||||||||||| || ||||| ||||| || |||||||| || | Sbjct: 55969 acatcataaggttccttgggtatgaatggtagtgtggggaaacggagaaagcatttcccc 56028 Query: 479 ctgatcatctcctccttctcgagatcagtctcggcactagccatgtcctcttgagacagg 538 |||||||||||| | | || ||||| ||||| ||||| ||||||||||||| |||||| Sbjct: 56029 ttgatcatctcctgcctttcaagatctgtctcagcactcgccatgtcctcttcggacagg 56088 Query: 539 cattgcaccttcccccggataccggtgatgtatccatcgggtgagccatggacacagaat 598 ||||||||| | ||||| |||||||||||||| ||||| ||| ||||| ||||||||| Sbjct: 56089 cattgcacccttccccgaataccggtgatgtaaccatcaggtccaccatgaacacagaat 56148 Query: 599 gt 600 || Sbjct: 56149 gt 56150 Score = 149 bits (75), Expect = 1e-32 Identities = 172/204 (84%), Gaps = 3/204 (1%) Strand = Plus / Plus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 55445 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 55504 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 55505 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 55564 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 55565 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 55624 Query: 335 tttggtgttcttgagtatatctga 358 || ||||||||||||||||||||| Sbjct: 55625 ttaggtgttcttgagtatatctga 55648
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 178 bits (90), Expect = 1e-41 Identities = 204/242 (84%) Strand = Plus / Plus Query: 359 ataaagcttgtgtccttcgctccagacacaacggcgtaattgtcatagtcagttgctagg 418 |||||||||||||| || || |||||||||||||||||||||||||| || ||||| || Sbjct: 31883043 ataaagcttgtgtctttagcaccagacacaacggcgtaattgtcataatcggttgcaagc 31883102 Query: 419 acatcatagggtagcttgggtatgaacgggagtgtcgggaatcgcagaaagcacttgctg 478 |||||||| ||| |||||||||||| || ||||| ||||| || |||||||| || | Sbjct: 31883103 acatcataaggttccttgggtatgaatggtagtgtggggaaacggagaaagcatttcccc 31883162 Query: 479 ctgatcatctcctccttctcgagatcagtctcggcactagccatgtcctcttgagacagg 538 |||||||||||| | | || ||||| ||||| ||||| ||||||||||||| |||||| Sbjct: 31883163 ttgatcatctcctgcctttcaagatctgtctcagcactcgccatgtcctcttcggacagg 31883222 Query: 539 cattgcaccttcccccggataccggtgatgtatccatcgggtgagccatggacacagaat 598 ||||||||| | ||||| |||||||||||||| ||||| ||| ||||| ||||||||| Sbjct: 31883223 cattgcacccttccccgaataccggtgatgtaaccatcaggtccaccatgaacacagaat 31883282 Query: 599 gt 600 || Sbjct: 31883283 gt 31883284 Score = 149 bits (75), Expect = 1e-32 Identities = 172/204 (84%), Gaps = 3/204 (1%) Strand = Plus / Plus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 31882579 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 31882638 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 31882639 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 31882698 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 31882699 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 31882758 Query: 335 tttggtgttcttgagtatatctga 358 || ||||||||||||||||||||| Sbjct: 31882759 ttaggtgttcttgagtatatctga 31882782
>dbj|AK101027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F02, full insert sequence Length = 3504 Score = 178 bits (90), Expect = 1e-41 Identities = 204/242 (84%) Strand = Plus / Plus Query: 359 ataaagcttgtgtccttcgctccagacacaacggcgtaattgtcatagtcagttgctagg 418 |||||||||||||| || || |||||||||||||||||||||||||| || ||||| || Sbjct: 570 ataaagcttgtgtctttagcaccagacacaacggcgtaattgtcataatcggttgcaagc 629 Query: 419 acatcatagggtagcttgggtatgaacgggagtgtcgggaatcgcagaaagcacttgctg 478 |||||||| ||| |||||||||||| || ||||| ||||| || |||||||| || | Sbjct: 630 acatcataaggttccttgggtatgaatggtagtgtggggaaacggagaaagcatttcccc 689 Query: 479 ctgatcatctcctccttctcgagatcagtctcggcactagccatgtcctcttgagacagg 538 |||||||||||| | | || ||||| ||||| ||||| ||||||||||||| |||||| Sbjct: 690 ttgatcatctcctgcctttcaagatctgtctcagcactcgccatgtcctcttcggacagg 749 Query: 539 cattgcaccttcccccggataccggtgatgtatccatcgggtgagccatggacacagaat 598 ||||||||| | ||||| |||||||||||||| ||||| ||| ||||| ||||||||| Sbjct: 750 cattgcacccttccccgaataccggtgatgtaaccatcaggtccaccatgaacacagaat 809 Query: 599 gt 600 || Sbjct: 810 gt 811 Score = 149 bits (75), Expect = 1e-32 Identities = 172/204 (84%), Gaps = 3/204 (1%) Strand = Plus / Plus Query: 158 agcttcaggtccgggaactggtttgtcagggcctcgtccatcccgggcatagacatcatc 217 ||||||||||| |||||||| || |||| ||||| |||||| ||||| ||||||||| Sbjct: 230 agcttcaggtctgggaactgattcgtcaaagcctcagtcatcccaggcattgacatcatc 289 Query: 218 tgcgctagctggtccgaggaca---cctcgcagtcctgnggcgtgtccttgatcttgctc 274 | | |||||||||| ||||| ||||||| ||||| || |||||||||||||||||| Sbjct: 290 agaccaagctggtccgtggacatcacctcgcaatcctgtggggtgtccttgatcttgctc 349 Query: 275 gggtcgtagccgaagccggcagcatatgacttgtacttctcgatgaactccggtccggga 334 || || || |||||| |||||| || |||||||||||||||||||| || ||||| ||| Sbjct: 350 ggatcataaccgaagttggcagcgtaggacttgtacttctcgatgaattctggtccagga 409 Query: 335 tttggtgttcttgagtatatctga 358 || ||||||||||||||||||||| Sbjct: 410 ttaggtgttcttgagtatatctga 433
>gb|DQ223010.1| Glycine max chloroplast lipocalin (CHL) mRNA, complete cds; nuclear gene for chloroplast product Length = 990 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 302 gacttgtacttctcgatgaactccggtccgggatttggtgttcttgagtatatctgaata 361 ||||||||||||| || || || ||||| || || ||||| |||||||||||||||||| Sbjct: 761 gacttgtacttctgtataaattcaggtccagggttaggtgtccttgagtatatctgaata 702 Query: 362 aa 363 || Sbjct: 701 aa 700
>gb|DQ223007.1| Ipomoea nil chloroplast lipocalin (CHL) mRNA, complete cds; nuclear gene for chloroplast product Length = 1005 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 305 ttgtacttctcgatgaactccggtccgggatttggtgttcttgagtatatctgaataaag 364 ||||||||||| |||||||| ||||| |||| ||||| || || || ||||||| |||| Sbjct: 776 ttgtacttctcaatgaactcgggtcctggatcaggtgtcctcgaataaatctgaacaaag 717 Query: 365 cttgtgtccttcgctccagacacaacggcgtaattgtcatagtcagttgc 414 || |||| || ||||| || || | |||| |||||||||| || ||||| Sbjct: 716 ctcttgtctttagctcctgaaactatggcgaaattgtcataatcggttgc 667
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 273 tcgggtcgtagccgaagccggca 295 ||||||||||||||||||||||| Sbjct: 467440 tcgggtcgtagccgaagccggca 467462
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 271 gctcgggtcgtagccgaagccg 292 |||||||||||||||||||||| Sbjct: 6878271 gctcgggtcgtagccgaagccg 6878292
>gb|AC134420.8| Mus musculus chromosome 15, clone RP23-478J5, complete sequence Length = 190455 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 470 cacttgctgctgatcatctcctcct 494 |||||||||||| |||||||||||| Sbjct: 68320 cacttgctgctggtcatctcctcct 68296
>gb|DQ223008.1| Solanum tuberosum chloroplast lipocalin (CHL) mRNA, complete cds; nuclear gene for chloroplast product Length = 1002 Score = 42.1 bits (21), Expect = 2.1 Identities = 117/149 (78%) Strand = Plus / Minus Query: 305 ttgtacttctcgatgaactccggtccgggatttggtgttcttgagtatatctgaataaag 364 ||||||||||| || || || ||||| ||||| || || || ||||||||||||| ||| Sbjct: 773 ttgtacttctcaataaattctggtcctggattaggcgtcctcgagtatatctgaacgaag 714 Query: 365 cttgtgtccttcgctccagacacaacggcgtaattgtcatagtcagttgctaggacatca 424 ||| | || || |||||||| || | ||| | || ||||| |||||||| | |||||| Sbjct: 713 cttttatctttagctccagaaaccagtgcgaagttatcataatcagttgcaatcacatca 654 Query: 425 tagggtagcttgggtatgaacgggagtgt 453 || || |||||| |||||||| ||||| Sbjct: 653 taaggctccttggggatgaacggcagtgt 625
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 cttgaaatacacttcggcgagctt 105 ||||||||| |||||||||||||| Sbjct: 600118 cttgaaatagacttcggcgagctt 600141
>ref|NM_001011881.1| Danio rerio novel immune-type receptor 1j (nitr1j), mRNA Length = 972 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 593 cagaatgtcttcaccttgat 612 |||||||||||||||||||| Sbjct: 849 cagaatgtcttcaccttgat 830
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 gctcgtgaacgggtcgaacgcgac 147 ||||||||||||||||| |||||| Sbjct: 2977507 gctcgtgaacgggtcgagcgcgac 2977530
>emb|X60282.1|NTPR4BX N.tabacum mRNA for PR-4b protein Length = 641 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cgcagaaagcacttgctgct 480 |||||||||||||||||||| Sbjct: 166 cgcagaaagcacttgctgct 147
>emb|X60281.1|NTPR4AX N.tabacum mRNA for PR-4a protein Length = 645 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cgcagaaagcacttgctgct 480 |||||||||||||||||||| Sbjct: 166 cgcagaaagcacttgctgct 147
>emb|X58546.1|NTPR4A N.tabacum PR-4A mRNA for pathogenesis-related protein 4A Length = 686 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cgcagaaagcacttgctgct 480 |||||||||||||||||||| Sbjct: 175 cgcagaaagcacttgctgct 156
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tcgggtcgtagccgaagccg 292 |||||||||||||||||||| Sbjct: 120965 tcgggtcgtagccgaagccg 120984
>ref|XM_572187.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 6825 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 cttgaaatacacttcggcgagctt 105 ||||||||| |||||||||||||| Sbjct: 4862 cttgaaatagacttcggcgagctt 4839
>gb|AF138971.2| Semibalanus balanoides RNA polymerase II largest subunit mRNA, partial cds Length = 1873 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 atcatctcctccttctcgag 501 |||||||||||||||||||| Sbjct: 600 atcatctcctccttctcgag 581
>gb|AC135895.2| Homo sapiens 12 BAC RP11-168J19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 102539 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 tgctgatcatctcctccttc 496 |||||||||||||||||||| Sbjct: 65735 tgctgatcatctcctccttc 65754
>gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complete sequence Length = 168142 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 584 ccatggacacagaatgtctt 603 |||||||||||||||||||| Sbjct: 49418 ccatggacacagaatgtctt 49437
>ref|XM_561075.1| Anopheles gambiae str. PEST ENSANGP00000027421 (ENSANGG00000023361), partial mRNA Length = 963 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cttcttcagggtctgggtca 122 |||||||||||||||||||| Sbjct: 120 cttcttcagggtctgggtca 101
>emb|X58547.1|NTPR4B N.tabacum PR-4B mRNA for pathogenesis-related protein 4B Length = 599 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cgcagaaagcacttgctgct 480 |||||||||||||||||||| Sbjct: 140 cgcagaaagcacttgctgct 121
>gb|AF026474.1|AF026474 Pleuronectes vetulus GTPase K-rasB proto-oncogene mRNA, complete cds Length = 810 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cttcggcgtgaagaaggaaa 45 |||||||||||||||||||| Sbjct: 118 cttcggcgtgaagaaggaaa 137
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcgggtcgtagccgaagccg 292 |||||||||||||||||||| Sbjct: 1229062 tcgggtcgtagccgaagccg 1229043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,117,179 Number of Sequences: 3902068 Number of extensions: 4117179 Number of successful extensions: 67394 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67077 Number of HSP's gapped (non-prelim): 297 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
