ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags3a20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY112315.1| Zea mays CL1308_2 mRNA sequence 147 5e-32
2emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5 131 3e-27
3emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2 131 3e-27
4gb|AY104474.1| Zea mays PCO112790 mRNA sequence 131 3e-27
5gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence 123 7e-25
6dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
7ref|XM_450544.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
8ref|XM_506649.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 1e-07
9ref|XM_450545.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
11dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
12dbj|AB117994.1| Oryza sativa (japonica cultivar-group) bip107 mR... 66 1e-07
13dbj|AK098857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
14dbj|AK067685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
15dbj|AK058307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
16gb|AY747501.1| Arachis hypogaea isolate PRGAFG08 resistance prot... 48 0.032
17ref|XM_517102.1| PREDICTED: Pan troglodytes similar to actin bin... 42 2.0
18gb|AC104856.19| Mus musculus chromosome 5, clone RP23-53G23, com... 42 2.0
19gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome... 42 2.0
20gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, compl... 42 2.0
21gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 42 2.0
22gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, com... 42 2.0
23gb|BC102699.1| Bos taurus similar to Actin, aortic smooth muscle... 42 2.0
24gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome... 42 2.0
25gb|BT021508.1| Bos taurus actin, alpha 2, smooth muscle, aorta (... 42 2.0
26emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on ch... 42 2.0
27ref|NM_001034502.1| Bos taurus similar to Actin, aortic smooth m... 42 2.0
28ref|XM_529781.1| PREDICTED: Pan troglodytes LOC454103 (LOC454103... 40 7.8
29gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 7.8
30gb|AE006305.1| Lactococcus lactis subsp. lactis IL1403 section 6... 40 7.8
31gb|BC091058.1| Xenopus tropicalis hypothetical protein LOC594878... 40 7.8
32emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chro... 40 7.8
33gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 7.8
34emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 o... 40 7.8
35gb|AY099291.1| Rhodobacter capsulatus ribosomal protein S12 (rps... 40 7.8
36dbj|AB226103.1| Aspergillus oryzae cDNA, contig sequence: AoEST2960 40 7.8
37gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, comp... 40 7.8
38dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 7.8
39dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 40 7.8
40dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.8
41dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.8
42gb|AY103775.1| Zea mays PCO076979 mRNA sequence 40 7.8
43dbj|AP005265.2| Homo sapiens genomic DNA, chromosome 18, clone:R... 40 7.8 
>gb|AY112315.1| Zea mays CL1308_2 mRNA sequence
          Length = 840

 Score =  147 bits (74), Expect = 5e-32
 Identities = 264/328 (80%)
 Strand = Plus / Minus

                                                                       
Query: 172 tcgtcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgg 231
           ||||||||||||||||||||||||||||     |  |||||||| ||||| || ||||||
Sbjct: 488 tcgtcagactcggcgctctggagccactcgacaaacggcttggcattcttgacgacctgg 429

                                                                       
Query: 232 gagtccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaagg 291
           |||||||| || || || |||||  |  ||||||| | |||||  ||||| ||||| |||
Sbjct: 428 gagtcctttccagctgcgacagcagcgttgtaccagtccacaacggtttcctcctccagg 369

                                                                       
Query: 292 acatctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctg 351
           | ||||||||| || ||||| |||||||| || || |  |||||||| ||||||| | ||
Sbjct: 368 atatctccgtcgtacagggctttcaggacaactgggacctccttcagcgcctcggggttg 309

                                                                       
Query: 352 cacttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggc 411
           ||||||| ||  || ||||| ||||  || | ||| ||  |||||||| | ||||| |||
Sbjct: 308 cacttgctgccaaaagcctcgatggcttgaatcagcagggtctgggcaccctcatctggc 249

                                                                       
Query: 412 acagcagcagcaaggtacttcttgttcttcatcacatcctttgcaaaccccttgccagca 471
           |||||| | ||||||||||||||||||||||  || ||||||||||| ||||||||  ||
Sbjct: 248 acagcaactgcaaggtacttcttgttcttcacgacctcctttgcaaatcccttgcccaca 189

                                       
Query: 472 ccatggaagagcgcctcgaagagagcat 499
           || |  ||||| ||||||| ||||||||
Sbjct: 188 ccgtcaaagagagcctcgaggagagcat 161
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>emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5
          Length = 1975

 Score =  131 bits (66), Expect = 3e-27
 Identities = 217/268 (80%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||||||||| |||||||||||||    ||  |||||||| ||||| ||||||||||||
Sbjct: 1679 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 1620

                                                                        
Query: 235  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 294
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1619 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1560

                                                                        
Query: 295  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 354
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1559 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1500

                                                                        
Query: 355  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 414
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1499 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1440

                                        
Query: 415  gcagcagcaaggtacttcttgttcttca 442
            ||| | ||||||||||||||||||||||
Sbjct: 1439 gcaactgcaaggtacttcttgttcttca 1412
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>emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2
          Length = 6831

 Score =  131 bits (66), Expect = 3e-27
 Identities = 217/268 (80%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||||||||| |||||||||||||    ||  |||||||| ||||| ||||||||||||
Sbjct: 4878 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 4819

                                                                        
Query: 235  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 294
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 4818 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 4759

                                                                        
Query: 295  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 354
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 4758 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 4699

                                                                        
Query: 355  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 414
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 4698 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 4639

                                        
Query: 415  gcagcagcaaggtacttcttgttcttca 442
            ||| | ||||||||||||||||||||||
Sbjct: 4638 gcaactgcaaggtacttcttgttcttca 4611
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>gb|AY104474.1| Zea mays PCO112790 mRNA sequence
          Length = 2008

 Score =  131 bits (66), Expect = 3e-27
 Identities = 217/268 (80%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||||||||| |||||||||||||    ||  |||||||| ||||| ||||||||||||
Sbjct: 1740 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 1681

                                                                        
Query: 235  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 294
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1680 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1621

                                                                        
Query: 295  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 354
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1620 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1561

                                                                        
Query: 355  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 414
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1560 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1501

                                        
Query: 415  gcagcagcaaggtacttcttgttcttca 442
            ||| | ||||||||||||||||||||||
Sbjct: 1500 gcaactgcaaggtacttcttgttcttca 1473
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>gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence
          Length = 1992

 Score =  123 bits (62), Expect = 7e-25
 Identities = 216/268 (80%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||||||||| |||||||||||||    ||  || ||||| ||||| ||||||||||||
Sbjct: 1725 tcagactcggcactctggagccactcgacgaacgggttggcattcttgacaacctgggag 1666

                                                                        
Query: 235  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 294
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1665 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1606

                                                                        
Query: 295  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 354
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1605 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1546

                                                                        
Query: 355  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 414
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1545 ttaccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1486

                                        
Query: 415  gcagcagcaaggtacttcttgttcttca 442
            ||| | ||||||||||||||||||||||
Sbjct: 1485 gcaactgcaaggtacttcttgttcttca 1458
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>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0545E05
          Length = 163229

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                         
Query: 175   tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
             ||||| || ||||||||||||||||    ||  || ||||| |||||||| |||||||| 
Sbjct: 26661 tcagaatccgcgctctggagccactccacgaatggtttggcattcttcaccacctgggac 26720

                                                
Query: 235   tccttgccggcagcaacagcttcactgtaccactg 269
             |||||||| |||||||||| |||| ||||||||||
Sbjct: 26721 tccttgccagcagcaacagattcattgtaccactg 26755



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 382   agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
             ||||||| ||||||||  ||||||||||| |||||||| || ||| | ||||| ||||||
Sbjct: 26868 agcaggaccatctgggaggcttcatcaggtacagcagccgcgaggaatttcttcttcttc 26927

                                       
Query: 442   atcacatcctttgcaaaccccttgcc 467
             |  || ||||| ||||| || |||||
Sbjct: 26928 acaacctccttggcaaatcctttgcc 26953
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>ref|XM_450544.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2008

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689

                                               
Query: 235  tccttgccggcagcaacagcttcactgtaccactg 269
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1688 tccttgccaccagcaacagattcattataccactg 1654



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 382  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482

             
Query: 442  a 442
            |
Sbjct: 1481 a 1481
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>ref|XM_506649.1| PREDICTED Oryza sativa (japonica cultivar-group), P0706E03.4-1 mRNA
          Length = 2011

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 1751 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1692

                                               
Query: 235  tccttgccggcagcaacagcttcactgtaccactg 269
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1691 tccttgccaccagcaacagattcattataccactg 1657



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 382  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1544 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1485

             
Query: 442  a 442
            |
Sbjct: 1484 a 1484
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>ref|XM_450545.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1407

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095

                                               
Query: 235  tccttgccggcagcaacagcttcactgtaccactg 269
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1094 tccttgccaccagcaacagattcattataccactg 1060



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 382 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888

            
Query: 442 a 442
           |
Sbjct: 887 a 887
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 175     tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
               ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 9584894 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 9584835

                                                  
Query: 235     tccttgccggcagcaacagcttcactgtaccactg 269
               ||||||||  ||||||||| |||| | ||||||||
Sbjct: 9584834 tccttgccaccagcaacagattcattataccactg 9584800



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                           
Query: 382     agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
               ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 9584687 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 9584628

                
Query: 442     a 442
               |
Sbjct: 9584627 a 9584627
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>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 175   tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
             ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 24991 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 24932

                                                
Query: 235   tccttgccggcagcaacagcttcactgtaccactg 269
             ||||||||  ||||||||| |||| | ||||||||
Sbjct: 24931 tccttgccaccagcaacagattcattataccactg 24897



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 382   agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
             ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 24784 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 24725

              
Query: 442   a 442
             |
Sbjct: 24724 a 24724
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>dbj|AB117994.1| Oryza sativa (japonica cultivar-group) bip107 mRNA for BRI1-KD
            interacting protein 107, partial cds
          Length = 1430

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 1152 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1093

                                               
Query: 235  tccttgccggcagcaacagcttcactgtaccactg 269
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1092 tccttgccaccagcaacagattcattataccactg 1058



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 382 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 945 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 886

            
Query: 442 a 442
           |
Sbjct: 885 a 885
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>dbj|AK098857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L01, full
            insert sequence
          Length = 2008

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689

                                               
Query: 235  tccttgccggcagcaacagcttcactgtaccactg 269
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1688 tccttgccaccagcaacagattcattataccactg 1654



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 382  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482

             
Query: 442  a 442
            |
Sbjct: 1481 a 1481
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>dbj|AK067685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G06, full
            insert sequence
          Length = 2010

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 1750 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1691

                                               
Query: 235  tccttgccggcagcaacagcttcactgtaccactg 269
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1690 tccttgccaccagcaacagattcattataccactg 1656



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 382  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1543 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1484

             
Query: 442  a 442
            |
Sbjct: 1483 a 1483
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>dbj|AK058307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H04, full
            insert sequence
          Length = 1407

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 175  tcagactcggcgctctggagccacttnntgacgggcttggcgttcttcacaacctgggag 234
            ||||| || ||||||||||||||||    ||  |||||||| |||||||| |||||||| 
Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095

                                               
Query: 235  tccttgccggcagcaacagcttcactgtaccactg 269
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1094 tccttgccaccagcaacagattcattataccactg 1060



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 382 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 441
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888

            
Query: 442 a 442
           |
Sbjct: 887 a 887
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>gb|AY747501.1| Arachis hypogaea isolate PRGAFG08 resistance protein PRG gene,
           partial cds
          Length = 366

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 423 aaggtacttcttgttcttcatcac 446
           ||||||||||||||||||||||||
Sbjct: 289 aaggtacttcttgttcttcatcac 266
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>ref|XM_517102.1| PREDICTED: Pan troglodytes similar to actin binding LIM protein
            family, member 2; actin binding LIM protein 2
            (LOC461112), mRNA
          Length = 5823

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 242  cggcagcaacagcttcactgt 262
            |||||||||||||||||||||
Sbjct: 3494 cggcagcaacagcttcactgt 3514
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>gb|AC104856.19| Mus musculus chromosome 5, clone RP23-53G23, complete sequence
          Length = 169800

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    gacaacgagggacacttcaaacaca 86
             ||||| |||||||||||||||||||
Sbjct: 87499 gacaaggagggacacttcaaacaca 87523
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>gb|AC160335.6| Mus musculus BAC clone RP23-38N19 from chromosome 15, complete
            sequence
          Length = 212090

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 62   gacaacgagggacacttcaaacaca 86
            ||||| |||||||||||||||||||
Sbjct: 8200 gacaaggagggacacttcaaacaca 8176
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>gb|AC108948.3| Mus musculus BAC clone RP23-183P12 from 15, complete sequence
          Length = 196923

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 62     gacaacgagggacacttcaaacaca 86
              ||||| |||||||||||||||||||
Sbjct: 125270 gacaaggagggacacttcaaacaca 125246
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>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 242    cggcagcaacagcttcactgt 262
              |||||||||||||||||||||
Sbjct: 166280 cggcagcaacagcttcactgt 166260
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>gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, complete sequence
          Length = 200105

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    caactgactcaaactccaaat 51
             |||||||||||||||||||||
Sbjct: 26049 caactgactcaaactccaaat 26029
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>gb|BC102699.1| Bos taurus similar to Actin, aortic smooth muscle (Alpha-actin-2),
           mRNA (cDNA clone MGC:127800 IMAGE:7954549), complete cds
          Length = 1364

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 gaggaggacagcaccgccttg 546
           |||||||||||||||||||||
Sbjct: 77  gaggaggacagcaccgccttg 97
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>gb|AC125455.3| Mus musculus BAC clone RP24-170L2 from chromosome 15, complete sequence
          Length = 145059

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 62    gacaacgagggacacttcaaacaca 86
             ||||| |||||||||||||||||||
Sbjct: 92702 gacaaggagggacacttcaaacaca 92726
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>gb|BT021508.1| Bos taurus actin, alpha 2, smooth muscle, aorta (ACTA2), mRNA,
           complete cds
          Length = 1330

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 gaggaggacagcaccgccttg 546
           |||||||||||||||||||||
Sbjct: 53  gaggaggacagcaccgccttg 73
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>emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on chromosome 4, complete
             sequence
          Length = 157168

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 403   tcatcaggcacagcagcagca 423
             |||||||||||||||||||||
Sbjct: 30014 tcatcaggcacagcagcagca 29994
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>ref|NM_001034502.1| Bos taurus similar to Actin, aortic smooth muscle (Alpha-actin-2)
           (MGC127800), mRNA
          Length = 1364

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 526 gaggaggacagcaccgccttg 546
           |||||||||||||||||||||
Sbjct: 77  gaggaggacagcaccgccttg 97
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>ref|XM_529781.1| PREDICTED: Pan troglodytes LOC454103 (LOC454103), mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 404 catcaggcacagcagcagca 423
           ||||||||||||||||||||
Sbjct: 436 catcaggcacagcagcagca 417
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    tccgtcatagagggccttca 316
              ||||||||||||||||||||
Sbjct: 138053 tccgtcatagagggccttca 138072
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>gb|AE006305.1| Lactococcus lactis subsp. lactis IL1403 section 67 of 218 of the
            complete genome
          Length = 11435

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 426  gtacttcttgttcttcatca 445
            ||||||||||||||||||||
Sbjct: 1069 gtacttcttgttcttcatca 1050
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>gb|BC091058.1| Xenopus tropicalis hypothetical protein LOC594878, mRNA (cDNA clone
           IMAGE:7022094), partial cds
          Length = 1691

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 gcacagcagcagcaaggtac 429
           ||||||||||||||||||||
Sbjct: 127 gcacagcagcagcaaggtac 108
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>emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 150424

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   cagcaaggtacttcttgttc 438
             ||||||||||||||||||||
Sbjct: 62297 cagcaaggtacttcttgttc 62278
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    agcaggagcatctgggcagc 401
              ||||||||||||||||||||
Sbjct: 772056 agcaggagcatctgggcagc 772037
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>emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 on chromosome 20q12 Contains a
              novel gene, complete sequence
          Length = 125517

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    aacagcttcactgtaccactgcac 272
              |||||| |||||||||||||||||
Sbjct: 124452 aacagcatcactgtaccactgcac 124429
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>gb|AY099291.1| Rhodobacter capsulatus ribosomal protein S12 (rpsL) gene, partial
           cds; ribosomal protein S7 (rpsG), elongation factor G
           (fusA), and elongation factor TU (tufA) genes, complete
           cds; and ribosomal protein S10 (rpsJ) gene, partial cds
          Length = 4464

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 470 caccatggaagagcgcctcg 489
           ||||||||||||||||||||
Sbjct: 498 caccatggaagagcgcctcg 517
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>dbj|AB226103.1| Aspergillus oryzae cDNA, contig sequence: AoEST2960
          Length = 720

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 acaacctgggagtccttgcc 242
           ||||||||||||||||||||
Sbjct: 346 acaacctgggagtccttgcc 327
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>gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, complete sequence
          Length = 199594

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 419  cagcaaggtacttcttgttc 438
            ||||||||||||||||||||
Sbjct: 2920 cagcaaggtacttcttgttc 2901
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    ccttcaggacgacaggcaat 330
              ||||||||||||||||||||
Sbjct: 208928 ccttcaggacgacaggcaat 208909
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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    acaacctgggagtccttgcc 242
              ||||||||||||||||||||
Sbjct: 854208 acaacctgggagtccttgcc 854189
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 333     cttcagggcctcggcgctgc 352
               ||||||||||||||||||||
Sbjct: 1571400 cttcagggcctcggcgctgc 1571419
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 340     gcctcggcgctgcacttgcc 359
               ||||||||||||||||||||
Sbjct: 8835634 gcctcggcgctgcacttgcc 8835653
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>gb|AY103775.1| Zea mays PCO076979 mRNA sequence
          Length = 1495

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 caggcacagcagcagcaagg 426
           ||||||||||||||||||||
Sbjct: 182 caggcacagcagcagcaagg 163
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>dbj|AP005265.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-78F17, complete
             sequence
          Length = 51000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    aactcaactgactcaaactccaaa 50
             ||||||| ||||||||||||||||
Sbjct: 20234 aactcaaatgactcaaactccaaa 20211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,236,010
Number of Sequences: 3902068
Number of extensions: 5236010
Number of successful extensions: 112786
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112507
Number of HSP's gapped (non-prelim): 274
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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